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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1348 fasta sequence
[TCAAGACGGTGTGTGGTACGGTACTGTGGTTAGATTTTATTCCCAGCTAACACCTTCAAAACTCGCCCCCCCTCCCGTGCCATTAACTACTATTTTTGGTTGACAAAAAAACAACACATTCCCCGGACAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGCGTGTGTGTTTAATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCTCTCCCTATTCTAACCCGTGTTCAAAGCGTGTTGTACAGAAGTGCCTGCCTAGAGCGCGTGTGGCCCTTCAGCCCGGCAATTCTAAAATCCAAACACCCCCCTTACCACTGATCATCGCCGACCGACCAACCGATCGACCGCCACGATGCCGTTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGA-GGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGTGGTGGGAAAGCGACACTACGAGGTGG-CCCGCATGCTGAAGGACATTCCCACCGGCTCCACGTTTACCATCCGCCTGGTGGAACCGATGAAGAGTGGCTTCCAGGGCATTGCGCCGCGCAAGGGTACGGCCGGCAGCAAACCGGGCAAGCAGGGATACGGCAGTGGCAAGGAGACGCTGCGGTTTAAGGCCAATGGAAATGCAGCAGAAGCTGGGGGGAAAAACAAGCGGCAGCGGGGGCGCACGGGCAGCCAGTGGAACAACCCTCGTGCAGGCAGGCAGCTAACACCAGCAAAACACGCCCCCCCTCCCGCGCCA]
[+] EMBL CNS09JUP [TCAAGACGGTGTGTGGTACGGTACTGTGGTTAGATTTTATTCCCAGCTAACACCTTCAAAACTCGCCCCCCCTCCCGTGCCATTAACTACTATTTTTGGTTGACAAAAAAACAACACATTCCCCGGACAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGCGTGTGTGTTTAATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCTCTCCCTATTCTAACCCGTGTTCAAAGCGTGTTGTACAGAAGTGCCTGCCTAGAGCGCGTGTGGCCCTTCAGCCCGGCAATTCTAAAATCCAAACACCCCCCTTACCACTGATCATCGCCGACCGACCAACCGATCGACCGCCACGATGCCGTTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGAGGGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACAT ]
[+] EMBL BM655222 [ ccgCCCCTTACCACCGATCATCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGA GGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGTGGTGGGAAAGCGACACTACGAGGTGGCCCCGCATGCTGAAGGACATTCCCACCGGCTCCACGTTTACC ]
[+] EMBL BX620463 [ GGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGA GGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGTGGTGGGAAAGCGACACTACGAGGTGG CCCGCATGCTGAAGGACATTCCCACCGGCTCCACGTTTACCATCCGCCTGGTGGAACCGATGAAGAGTGGCTTCCAGGGCATTGCGCCGCGCAAG ]
[+] EMBL BX614692 [ CTGGTGGAACCGATGAAGAGTGGCTCCCAGGGCATTGCGCCGCGCAAGGGTACGGCCGGCAGCAAACCGGGCAAGCAGGGATACGGCAGTGGCAAGGAGACGCTGCGGTTTAAGGCCAATGGAAATGCAGCAGAAGCTGGGGGGAAAAACAAGCGGCAGCGGGGGCGCACGGGCAGCCAGTGGAACAACCCTCGTGCAGGCAGGCAGCTAACACCAGCAAAACACGCCCCCCCTCCCGCGCCA]
consensusID : consensus_7202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence
[CCGCCCACGCGTCCGCAATTTCCTTCATTCCTTTACCCTTTGATCCCCAATTCCCACGCCACTACTGATAATGGGACTTCCCACTGACACAGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAAGTGCCTGTGTAGAGCGCGAGTGGCCTTTCTGCCCGGCAATTCTAAAACCCAAACCCCCCGCCCCCCCTTACCACCGATCATCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCG]
[+] EMBL BM619000 [CCGCCCACGCGTCCGCAATTTCCTTCATTCCTTTACCCTTTGATCCCCAATTCCCACGCCACTACTGATAATGGGACTTCCCACTGACACAGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAAGTGCCTGTGTAGAGCGCGAGTGGCCTTTCTGCCCGGCAATTCTAAAACCCAAACCCCCCGCCCCCCCTTACCACCGATCATCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCG]
consensusID : consensus_7202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[CCGGGTGCGCACGGTCAGCCAGTGTAACAACCCTCGTGCAGGCAGGCAGGCAGGTAGGCCGGTTTTGCCACCTAACCCCATTCTTCTGCCGTTGCCGTTGTAACGGTTCATAGCGTTCGCCGAAGCGAGAAAGCCTACGTGAGGGAAAGAGATATCGAGAGCGCTCGCGAGAGAGTGAGAGAGAGGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAA]
[+] EMBL BM576598 [CCGGGTGCGCACGGTCAGCCAGTGTAACAACCCTCGTGCAGGCAGGCAGGCAGGTAGGCCGGTTTTGCCACCTAACCCCATTCTTCTGCCGTTGCCGTTGTAACGGTTCATAGCGTTCGCCGAAGCGAGAAAGCCTACGTGAGGGAAAGAGATATCGAGAGCGCTCGCGAGAGAGTGAGAGAGAGGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7202#0 ------------------------------------------------------------
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 CCGGGTGCGCACGGTCAGCCAGTGTAACAACCCTCGTGCAGGCAGGCAGGCAGGTAGGCC 60
consensus_7202#0 ------------------------------------------------------------
consensus_7202#1 ----------------------------CCGCCCACGCGTCCGCAATTTCCTTCATTCCT 32
consensus_7202#2 GGTTTTGCCACCTAACCCCATTCTTCTGCCGTTGCCGTTGTAACGGTTCATAGCGTTCGC 120
consensus_7202#0 ------TCAAGA--CGGTGTGTGGTACGGTACTGTGGTTA--------GATTTTATTCC- 43
consensus_7202#1 TTACCCTTTGAT--CCCCAATTCCCACGCCACTACTGATAATGG----GACTTCCCACTG 86
consensus_7202#2 CGAAGCGAGAAAGCCTACGTGAGGGAAAGAGATATCGAGAGCGCTCGCGAGAGAGTGAGA 180
* * * * * **
consensus_7202#0 ---CAGCTAACACCTTCAAAACTCGCCCCCCCTCCCGTGCCATTAACTACTATTTTTGGT 100
consensus_7202#1 ACACAGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGT 146
consensus_7202#2 GAGAGGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGT 240
********************* ***** ************** ***********
consensus_7202#0 TGACAAAAAAACAACACATTCCCCGGAC--------------------AACTGCATAGAA 140
consensus_7202#1 TGACAAAAAA-CAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAA 205
consensus_7202#2 TGACAAAAAA-CAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAA 299
********** ***************** ************
consensus_7202#0 GCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCT 200
consensus_7202#1 GCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCT 265
consensus_7202#2 GCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCT 359
************************************************************
consensus_7202#0 AGAGACGTGTGTCTGTGTGTGCGTGTGTG--TTTAATAGAGTTGATAGAGTTTTCCGGGT 258
consensus_7202#1 AGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGT 325
consensus_7202#2 AGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGT 419
********************* ******* *** *************************
consensus_7202#0 TCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCT 318
consensus_7202#1 TCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCG 385
consensus_7202#2 TCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCG 479
***********************************************************
consensus_7202#0 CTCCCTATTCTAACCCGTGTTCAAAGCGTGTTGTACAGAAGTGCCTGCCTAGAGCGCGTG 378
consensus_7202#1 TTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAAGTGCCTGTGTAGAGCGCGAG 445
consensus_7202#2 TTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAA-------------------- 519
**************************** **********
consensus_7202#0 TGGCCCTTCAGCCCGGCAATTCTAAAATCCAAACACCCC------CCTTACCACTGATCA 432
consensus_7202#1 TGGCCTTTCTGCCCGGCAATTCTAAAACCCAAACCCCCCGCCCCCCCTTACCACCGATCA 505
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 TCGCCGACCGACCAACCGATCGACCGCCACGATGCCGTTGTTCAATAAGAAAAGCACCAA 492
consensus_7202#1 TCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAA 565
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 AATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAA 552
consensus_7202#1 AATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAA 625
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 CTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGG 612
consensus_7202#1 CTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGG 685
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 TGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCA 672
consensus_7202#1 TGGCCACGGCGAGTCGACCG---------------------------------------- 705
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 CGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGAT 732
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 TGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAA 792
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 AGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACA 852
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 CAAAAAGGGCCGCCCGAAGGAGGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAAC 912
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 GATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTAT 972
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 CGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGT 1032
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 GGTGGGAAAGCGACACTACGAGGTGGCCCGCATGCTGAAGGACATTCCCACCGGCTCCAC 1092
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 GTTTACCATCCGCCTGGTGGAACCGATGAAGAGTGGCTTCCAGGGCATTGCGCCGCGCAA 1152
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 GGGTACGGCCGGCAGCAAACCGGGCAAGCAGGGATACGGCAGTGGCAAGGAGACGCTGCG 1212
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 GTTTAAGGCCAATGGAAATGCAGCAGAAGCTGGGGGGAAAAACAAGCGGCAGCGGGGGCG 1272
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 CACGGGCAGCCAGTGGAACAACCCTCGTGCAGGCAGGCAGCTAACACCAGCAAAACACGC 1332
consensus_7202#1 ------------------------------------------------------------
consensus_7202#2 ------------------------------------------------------------
consensus_7202#0 CCCCCCTCCCGCGCCA 1348
consensus_7202#1 ----------------
consensus_7202#2 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||