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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 970 fasta sequence
[GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAG-AAAATGGTTTAATGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAGAAGAAAAAAC]
[+] EMBL BX608622 [GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAA ]
[+] EMBL BX611676 [GATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTTCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGT AAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGG ]
[+] EMBL BX614717 [ CTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACCACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGCAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAATTAAAAATGTTAGACAACTAAACAAGCTGAACAAA ]
[-] EMBL BX611675 [ ACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTTCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAAATGGTTTAA ]
[+] EMBL BX616938 [ AAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAG AAAATGGTTTAATGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAGAAGAAAAAAC]
consensusID : consensus_7204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTGATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTA]
[+] EMBL BM625575 [ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTGATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7204#0 GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTA 60
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 CGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAA 120
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 AAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGA 180
consensus_7204#1 --------------ACCCACGCGTCCGCCCACGCGTCCGAGAAAACC--AAACAG-AGGA 43
* ** ** * *** *** ** * **
consensus_7204#0 TTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCC 240
consensus_7204#1 TTGAAAG---AAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAAT 100
*** *** * ** * * * ** ** * * ** * **
consensus_7204#0 TTGAAATATAGAAGAAACAAAACTATATAAATATACATA-----ACCATATACATATATA 295
consensus_7204#1 AGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGG 160
**** ** ***** **** * * *** * ** * * * **
consensus_7204#0 CTACATATA-TG--ATCATGTTTAAAACCCACTACT-ATTAAAACAAAACACACTCACAA 351
consensus_7204#1 CTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGT 220
** * *** ** ** ** **** ** ** * * * ** ** *** *
consensus_7204#0 ACACCCATCATCAGAGTAC--AGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGT 409
consensus_7204#1 ACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGA---CAT 277
*** **** ** * * ** *** ** * * ** * ** *
consensus_7204#0 GTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCAC 469
consensus_7204#1 GGTTAAGGTTATAGTT-TACGTTGATTATGATTACTTAGCTACT-AAGCTATTTATTATA 335
* * * * **** * * ** ** * * *** * ** * *
consensus_7204#0 GTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCAT 529
consensus_7204#1 ATTCATCATTGAATTA-CATTTTTACGTAATCTATTACAATACCATTC--GTACTATTAT 392
* * * ** ** * ** ** * * * * ** * ****** * ** **
consensus_7204#0 TTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAA 589
consensus_7204#1 ATTGTTCGTTATCTT---------ATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCAC 443
* *** ** * * *** * * * ** * * *** ** * *
consensus_7204#0 AAATGTTAGACAACTAAACAAGCTGAACAAATCT--TTGAGGATAAGCA-GGGTTTGCAG 646
consensus_7204#1 CCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAG 503
* ** ** ** * * ** * * * * ** * * ** **** **
consensus_7204#0 AAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAAC 706
consensus_7204#1 TTTTTTCCTAACTATTTTATAGTAC-ACGCTGCTTCAACAACCTCCCTTGAAATATAGAA 562
* * * * * * * ** * ** **** * * *** * *
consensus_7204#0 AAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAAC 766
consensus_7204#1 GAAACAAAACTATATAAATATACATAACCATA--TACATATATACTACATATATGATCAT 620
** ** * *** * * * * *** * * *** * * ** * * *
consensus_7204#0 CAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACC 826
consensus_7204#1 GTTTAAAACCCACTA--------------------------------------------- 635
** *** **
consensus_7204#0 ACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAATGGTTTAA 886
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAG 946
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 GAATAAAAACACAGAAGAAAAAAC 970
consensus_7204#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||