cluster # 7214

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Anopheles gambiae
cluster # 7214 cluster # 7214 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7214#0 length = 708 sequences # 3

consensus_7214#1 length = 675 sequences # 2
consensus_7214#2 length = 539 sequences # 1

consensusID : consensus_7214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 708
fasta sequence

                              [ACCCACGCGTCCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGG-AGGAGGTGAATTCGCGCCACCTGCGACTCGGCGCGAACAGGCGGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG]

[+] EMBL BM579927             [ACCCACGCGTCCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCACCTGCGACTCGGCGCGAACAGGCGGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG]
[+] EMBL BM649207             [          CCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGG AGGAG                                                                               ]
[+] EMBL BM603100             [                            cCGGTCCAAACGCGGTAGCTCCGTATTAATGGTCAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGG AGGAGGTGAATTCGCGCCACCTGCGA                                                          ]




>consensus_7214#0
ACCCACGCGTCCGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGG
TAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGGTAGAGT
AAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGC
CACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATG
TGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGA
AGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGC
AGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAAT
CCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCA
TCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGA
AGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGA
TCGAGCTGCTGACGCTGATCCCGGAGGAGGTGAATTCGCGCCACCTGCGACTCGGCGCGA
ACAGGCGGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG

consensusID : consensus_7214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 675
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCG-GTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCA]

[+] EMBL BM616114             [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCG GTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCA]
[+] EMBL BM628481             [                                                    ccgGCTGGCGGTCCAAACGCGGTAGCTCCGTATTAATGGTCAAGTTTATCTGATAAAAAGTGATTGTGAGTGTATTTAAAGTATCGCCAGCGAGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCAG                                                                                                         ]




>consensus_7214#1
CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGG
CGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTG
AGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCC
ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC
GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG
GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA
CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC
TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC
AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC
GATCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTC
TCCAGCAACGCGAACATGATGTACGCACTGATCGAGCTGCTGACGCTGATCCCGGAAGGA
GGTGAATTCGCGCCA

consensusID : consensus_7214#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [GTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAAACATGATGTACGCACTGATCGAAGCCGCTGACGCTGATCCCCGGAGAGGTGAAT]

[+] EMBL CNS09E88             [GTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAAACATGATGTACGCACTGATCGAAGCCGCTGACGCTGATCCCCGGAGAGGTGAAT]




>consensus_7214#2
GTAAACCGCAAGCTAGAGAAAACGTCCGTCCATCCGTTCGTTGTCCGTCGCGAAAATGGA
GCCACCGACGGCAGAAGCGGTGCTGCAAGGCGTTTTCACCCTGTACAACGATCCGAACAA
TGTGGAAAAGGAGAAAGCCTCCAAGTGGTTGGAAGAATTCCAGAAATCGATTCATTCCTG
GAAGATAGCGGATGAGTTGCTGCGGCAAAAACATGATCTTAATTCCTGCACATTTGCGGC
GCAGACGATGCGTAACAAGATACAGAACAGCTTTCACGAGCTGCCAGAATCGGCCCACGA
ATCCCTGCGGCAGTCCCTGCTGGAGCATCTCAGCCACATAACGATCGAGACGAAATCGGT
CATCGTGACGCAGCTGTCGCTGGCGCTGGCCGATCTGGCACTGCTCATGTCTTCCTGGCA
CTGCTCATGTCTTCCTGGCAGAAGCCGGTCGCCACGCTGCTGCAGCGCTTCTCTAGCAAC
GCGAAACATGATGTACGCACTGATCGAAGCCGCTGACGCTGATCCCCGGAGAGGTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7214#1      CCGCCCACGCGTCCGCCCACGCGTCCGGAGAAAATAAAATATGGCGAAAAAATCTGCTGG 60
consensus_7214#2      ------------------------------------------------------------
consensus_7214#0      -------------------------------ACCCACGCGTCCGCGAAAAAATCTGCTGG 29
                                                                                  

consensus_7214#1      CGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTG 120
consensus_7214#2      ------------------------------------------------------------
consensus_7214#0      CGGTCCAAACGCGGTAGCTCCGTATTAATGGTAAAGTTTATCTGATAAAAAGTGATTGTG 89
                                                                                  

consensus_7214#1      AGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCC 180
consensus_7214#2      -----------------------------GTAAACCGCAAGCTAGAGAAAACGTCCGTCC 31
consensus_7214#0      AGTGTATTTAAAGTATCGCCAGCGGTAGAGTAAACCGCAAGCTAGAGAAAACGTCCGTCC 149
                                                   *******************************

consensus_7214#1      ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC 240
consensus_7214#2      ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC 91
consensus_7214#0      ATCCGTTCGTTGTCCGTCGCGAAAATGGAGCCACCGACGGCAGAAGCGGTGCTGCAAGGC 209
                      ************************************************************

consensus_7214#1      GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG 300
consensus_7214#2      GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG 151
consensus_7214#0      GTTTTCACCCTGTACAACGATCCGAACAATGTGGAAAAGGAGAAAGCCTCCAAGTGGTTG 269
                      ************************************************************

consensus_7214#1      GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA 360
consensus_7214#2      GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA 211
consensus_7214#0      GAAGAATTCCAGAAATCGATTCATTCCTGGAAGATAGCGGATGAGTTGCTGCGGCAAAAA 329
                      ************************************************************

consensus_7214#1      CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC 420
consensus_7214#2      CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC 271
consensus_7214#0      CATGATCTTAATTCCTGCACATTTGCGGCGCAGACGATGCGTAACAAGATACAGAACAGC 389
                      ************************************************************

consensus_7214#1      TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC 480
consensus_7214#2      TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC 331
consensus_7214#0      TTTCACGAGCTGCCAGAATCGGCCCACGAATCCCTGCGGCAGTCCCTGCTGGAGCATCTC 449
                      ************************************************************

consensus_7214#1      AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC 540
consensus_7214#2      AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC 391
consensus_7214#0      AGCCACATAACGATCGAGACGAAATCGGTCATCGTGACGCAGCTGTCGCTGGCGCTGGCC 509
                      ************************************************************

consensus_7214#1      GATCTGGCACTGCTCATGTCTTCCTG--------------------GCAGAAGCCGGTCG 580
consensus_7214#2      GATCTGGCACTGCTCATGTCTTCCTGGCACTGCTCATGTCTTCCTGGCAGAAGCCGGTCG 451
consensus_7214#0      GATCTGGCACTGCTCATGTCTTCCTG--------------------GCAGAAGCCGGTCG 549
                      **************************                    **************

consensus_7214#1      CCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAA-CATGATGTACGCACTGATCGA-GCT 638
consensus_7214#2      CCACGCTGCTGCAGCGCTTCTCTAGCAACGCGAAACATGATGTACGCACTGATCGAAGCC 511
consensus_7214#0      CCACGCTGCTGCAGCGCTTCTCCAGCAACGCGAA-CATGATGTACGCACTGATCGA-GCT 607
                      ********************** *********** ********************* ** 

consensus_7214#1      GCTGACGCTGATCCCGGAAGGAGGTGAATTCGCGCCA----------------------- 675
consensus_7214#2      GCTGACGCTGATCCCCGGAG-AGGTGAAT------------------------------- 539
consensus_7214#0      GCTGACGCTGATCCCGGAGG-AGGTGAATTCGCGCCACCTGCGACTCGGCGCGAACAGGC 666
                      *************** *  * ********                               

consensus_7214#1      ------------------------------------------
consensus_7214#2      ------------------------------------------
consensus_7214#0      GGAAAGAGATACTGATTCGACCTGGAGGCCGACTCGACGCTG 708