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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 941 fasta sequence
[ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAA-CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC-GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTG-CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCACTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCGGAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG]
[+] EMBL CNS09FDZ [ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCG A CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGG CACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGT CAGATGTACATGAACAAGTACCGCAC GGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTGCCCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGG CGTACGT CGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGAGCGACAACGGCGCG ]
[+] EMBL CNS09BFV [ GCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAA CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGG ]
[+] EMBL BX624165 [ TCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCCGGCGACGAGGCCACCGATGCCGCCCCAGCCAAACCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGCAACCCGCGCAACATGCTGAACGAGGCGAAGCTGTGCGGTCCGCGCGGGATAATCGCACTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAACTGGAAGCAATGGCGCAGGCCGCCGCAAACAGTG CCGACGAAGAGGAGCCAGACGTTGGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGAGGGGCCGTACGTCCGTTGCCAACACGTCTGGTATTGGGAATCTCTCGATGGACAACACGTTCGATGCTGTGCGGCAGACCGACAACGGTGCTGTGCACGCGAATGCTCTCAAGGACACCCATCAGCAACAAACGGTCAAATCGCCACCGGTGGCTGATGAA ]
[+] EMBL CNS08DVD [ TCCGAAACCCGCGCAACATGCTGAACGAGGCGAA CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTG CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGG ]
[-] EMBL CNS08DVE [ ACTACGAGCACTGGGCGCATCGGGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGAACAGGCGGCCGCCAACAGTG CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAA ]
[-] EMBL CNS09FE0 [ TCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCACTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCGGAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG]
consensusID : consensus_7227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 931 fasta sequence
[TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCAGCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACCGAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTCNCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGCACACNCGAAAGTTAGTATNTCAAACAT]
[+] EMBL AL696468 [TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCAGCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACCGAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTCNCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGCACACNCGAAAGTTAGTATNTCAAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7227#0 ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGA---AAAGTATTAACTTA 57
consensus_7227#1 --------------------------TCATGCAGATTCCCTGAGTTAAAGTAT--ACTTA 32
*** * ** ** ******* *****
consensus_7227#0 TCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCT 117
consensus_7227#1 TCGATTCAA-CCAAC-ATTGATTATC-GCTCGACCATCTGTTTAGTGATAATGTGGCGCT 89
********* ***** ** *** *** *********************************
consensus_7227#0 GGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGA 177
consensus_7227#1 GGAAGGTGAAAACGACGGGGAAATACTGTCCGACGAT-AACTCCCGGACGGNGATGCGGA 148
************************************* ************* ********
consensus_7227#0 CGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAA 237
consensus_7227#1 CGGCTCGGGCGACGAGGCCACGGATGCG--CCCAGCAAG--CCGTCGGTG-GGTGAAGAA 203
*************************** ****** * ****** * ** * ***
consensus_7227#0 GAAAAAAACGGTCC-GAAACCCG--CGCAACAT-GCTGAAC-GAGGCGA---ACTGTGCG 289
consensus_7227#1 CAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNG 263
**** * ***** ******* ******* ******* ** **** ***** *
consensus_7227#0 G--TCCGCGC-GGGATAATTGCGCTGAAGGACCACTTCAAGCACTTC-AAATTCCACGG- 344
consensus_7227#1 GGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGG 323
* * **** *********************************** ********* *
consensus_7227#0 -CAAGGGCCACGAAGCGTCCGA-TCTGAACCGGCTGATGCGCAACTA-CGAGCACTGG-G 400
consensus_7227#1 CNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCG 383
* * ************* ** ************************ *** ****** *
consensus_7227#0 CG--CATCGGCTGT--ATCCGAAGTTTCACTT-TGACGATTGTATGGCCAAGATCGAAAA 455
consensus_7227#1 CGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAA 443
** **** * ** ** ****** ****** ***************************
consensus_7227#0 GCTCGGCCACAAAAAGCA---GGTCCAG-ATGTACATGAA---CAAGTACCGC---ACGG 505
consensus_7227#1 GTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGG 503
* ********* * ******* ******** * ** ****** ****
consensus_7227#0 G-TATGCTGCA--GGCGG--AAATGGAA--GCAATGGCACA-GGCGGCCGCCAA--CAGT 555
consensus_7227#1 GGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGT 563
* ********* ***** ****** * *** * *** ***** ** * * ****
consensus_7227#0 --GCCGACGAAGAGGAGCCGGACGTTA---GTCAGCTGAATCGGCCGCTCGATCCGCTGG 610
consensus_7227#1 TGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGG 623
* *** * ** ** * ** * * ** * *** * * **
consensus_7227#0 AC--AGTATGCTGGAGGAACAGATTGCCCGGTCGC-GGGGCCGTACGTCCGTTGCCAAC- 666
consensus_7227#1 GCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANG 683
* * ** * * ** * ** ** *** * * ** *** ***
consensus_7227#0 ----ACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGAC 722
consensus_7227#1 CAAAACGCACGAATTTTTAGGCCCCCTG--GGATATACCGAGGNGAGGGNCCAGGTAAAA 741
*** ** ** * * * *** * ** * * ** * *
consensus_7227#0 CGACAACGGCGCG-GTGCACGCGAATGCTCTCAAAG-ACACCCATCAGCAACAAACGGTC 780
consensus_7227#1 CGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTC 801
*** ** * * * * * * *** * * * * **** **
consensus_7227#0 AAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCA 840
consensus_7227#1 ATCCCTTCTCCAGAG----ATGTGGCCCACACA----------CAACCAGTTCNCACGAC 847
* * * ** * * *** ** * *** * * * *
consensus_7227#0 CTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCG 900
consensus_7227#1 ATTCAAC--AGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGC- 904
* *** ** * * ** * **** * * * ** *** *** **
consensus_7227#0 GAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG 941
consensus_7227#1 --ACACNCGAAAGTTAGTATNTCAAACAT------------ 931
* ** * ** * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||