|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 945 fasta sequence
[CCGGGCAAGGGAGGAAAGTACGGTGGCAAAGGACAGTCCAACGAAAATGCGGACCGATACGGCAACAGCTACGGTTCGGAGGGCAGAAATCAGCAACAATCTCAGCACGGACATGGACAGGGTGCGAATGAAAACCGCCAGACCAGTGGTGGTGGTGGCGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCATCAACAGCAACATCAGCAGCAACATCAGCAGCAACACCATCACCACCAGCAGCAGCAGCAACACCATCAGCAGCAACGGGCACCGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTGGTCCCTCTCCTGGCGCAACGGCACCCTCGCCGGGCGTTGGTGGCCCGAAGAACTTCATGCCGCTACCGAACGGATACAATCCGTACCAGATGCAGATGGGCTACCCGAACAAGCAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATCTGGGCACTCCAGGGCCCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAATGCCGGTGAGTGTCACTCCGACGGGCGTACTGGCACAACCGCAACCCGCCGTGCTCGCTACGGCACCATCTCCAGGGTCAGTGCCGGCCCACGGTACCCTGGCCCCTACCAGCATGCCGATGGCACCGGCGATGGCTCCCCCTGCTACGGCGGCCATACCGGCCGTCTATACGAACTGGAAAATTGGCGATCGATGCTTGGCCAAATACTGGGAAGATGGTGGGTTCTATACAGCGGAAATTACGGACACGTCGAAGAACACGTTCGTCGTACACTTTTCTCGAGTACGGCAACTACGAGGAGGTGCTGAAAACGGACTG]
[+] EMBL BM578011 [CCGGGCAAGGGAGGAAAGTACGGTGGCAAAGGACAGTCCAACGAAAATGCGGACCGATACGGCAACAGCTACGGTTCGGAGGGCAGAAATCAGCAACAATCTCAGCACGGACATGGACAGGGTGCGAATGAAAACCGCCAGACCAGTGGTGGTGGTGGCGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCATCAACAGCAACATCAGCAGCAACATCAGCAGCAACACCATCACCACCAGCAGCAGCAGCAACACCATCAGCAGCAACGGGCACCGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTGGTCCCTCTCCTGGCGCAACGGCACCCTCGCCGGGCGTTGGTGGCCCGAAGAACTTCATGCCGCTACCGAACGGATACAATCCGTACCAGATGCAGATGGGCTACCCGAACAAGCAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATCTGGGCACTCCAGGGCCCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAATGCCGGTGAGTGTCACTCCGACGGGCGTACTGGCACAAC ]
[+] EMBL BM582888 [ ccgGCAGCAGCAACACCATCAGCAGCAACGGGCACCGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTGGTCCCTCTCCTGGCGCAACGGCACCCTCGCCGGGCGTTGGTGGCCCGAAGAACTTCATGCCGCTACCGAACGGATACAATCCGTACCAGATGCAGATGGGCTACCCGAACAAGCAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATCTGGGCACTCCAGGGCCCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAATGCCGGTGAGTGTCACTCCGACGGGCGTACTGGCACAACCGCAACCCGCCGTGCTCGCTACGGCACCATCTCCAGGGTCAGTGCCGGCCCACGGTACCCTGGCCCCTACCAGCATGCCGATGGCACCGGCGATGGCTCCCCCTGCTACGGCGGCCATACCGGCCGTCTATACGAACTGGAAAATTGGCGATCGATGCTTGGCCAAATACTGGGAAGATGGTGGGTTCTATACAGCGGAAATTACGGACACGTCGAAGAACACGTTCGTCGTACACTTTTCTCGAGTACGGCAACTACGAGGAGGTGCTGAAAACGGACTG]
consensusID : consensus_7233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 787 fasta sequence
[GGACACCTTTAAGAA-ACGTTCGTCGTACACTTTCTCGAGTACGGCAACTTCGAGGAGGTGCTGAAAACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCCGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACATGCCGATACCATCGCTGTTCAGTAAGTAGAAGCGC]
[+] EMBL BX617090 [GGACACCTTTAAGAA ACGTTCGTCGTACACTTTCTCGAGTACGGCAACTTCGAGGAGGTGCTGAAAACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCCGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACATGCCGATACCATCGCTGTTCAGTAAGTAGAAGCGC]
[+] EMBL BX617576 [ cgAAGAACACGTTCGTCGTACACTTTCTCGAGTACGGCAACTACGAGGAGGTGCTGAAAACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGT ]
[+] EMBL BX612430 [ ACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCC ]
[+] EMBL AGA283665 [ GTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCATCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCCGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACAT ]
consensusID : consensus_7233#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAATCATCCTACGGAAATGCATCCAAGCAGTCCGGCTATCACAATCAGCAGCACCAGGGCAATACAGCGAACGGAGGCAACAACAGCAACAACAACAACAACGCTAACAATCACTACAACCAACCAACTGGCGGTAGTGGTAACCATGGTAACACTTATGGCGGCGGTAGCGGTAACACTGGCTCCAAGAACTCGAACAAAGGTGGACGTTATGGTGGAGGTAAGGATGAATCTCATAAGTACAGTGGTGTGAGTGCAACACAATCCACCGCAACTAGTGCCAGCACCAACACCAACACCACCAACTCGCAGCAATCCAAAAAGGGGAAGGGCCACGGGTCGCAGCAGCATTCCAGCGCTGCGCAGAACAAACCAGCCGAGCAGCAGGCGTCATCGTACGGTTCGTCAGGCACGGGCAAGCAGCACGGAGCCTCGAACGCTAACAGCAACAGCAAGGTGAACCAAGTGGCGGAACAGATGGGAGGCATGCACCTTGGCGGCAACAAGGCGTCGTCGGGCTACAATGCCACGAACAGTAGCAACAACAACAACACGGATCGCTGCAGTCGTCC]
[+] EMBL BM586915 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAATCATCCTACGGAAATGCATCCAAGCAGTCCGGCTATCACAATCAGCAGCACCAGGGCAATACAGCGAACGGAGGCAACAACAGCAACAACAACAACAACGCTAACAATCACTACAACCAACCAACTGGCGGTAGTGGTAACCATGGTAACACTTATGGCGGCGGTAGCGGTAACACTGGCTCCAAGAACTCGAACAAAGGTGGACGTTATGGTGGAGGTAAGGATGAATCTCATAAGTACAGTGGTGTGAGTGCAACACAATCCACCGCAACTAGTGCCAGCACCAACACCAACACCACCAACTCGCAGCAATCCAAAAAGGGGAAGGGCCACGGGTCGCAGCAGCATTCCAGCGCTGCGCAGAACAAACCAGCCGAGCAGCAGGCGTCATCGTACGGTTCGTCAGGCACGGGCAAGCAGCACGGAGCCTCGAACGCTAACAGCAACAGCAAGGTGAACCAAGTGGCGGAACAGATGGGAGGCATGCACCTTGGCGGCAACAAGGCGTCGTCGGGCTACAATGCCACGAACAGTAGCAACAACAACAACACGGATCGCTGCAGTCGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7233#0 CCGGGCAAGGGAGGAAAGTACGGTGGCAAAGGACAGTCCAACGAAAATGCGGACCGATAC 60
consensus_7233#2 ------------------------------------------------------------
consensus_7233#1 ------------------------------------------GGACACCTTTAAGAAACG 18
consensus_7233#0 GGCAACAGCTACGGTTCGGAGGGCAGAAATCAGCAACAATCTCAGCACGGACATGGACAG 120
consensus_7233#2 ------------------------------------------------------------
consensus_7233#1 TTCGTCGTACACTTTCTCGAGTACGGCAACTTCGAGGAGGTGCTGAAAACGGACTG-TAT 77
consensus_7233#0 GGTGCGAATGAAAACCGCCAGACCAGTGGTGGTGGTGGC--GGCAAATCCGGTTCCGGAT 178
consensus_7233#2 --------------CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAATCCGGTTCCGGAT 46
consensus_7233#1 CCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCC 137
* *** * * * * * **** *** **
consensus_7233#0 CGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAT-CAACAGCAACATCAG 237
consensus_7233#2 CGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAG-CAGCAGCAGCAGCAG 105
consensus_7233#1 CG-----CACCGGCCCCA--CAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAG 190
** *** *** * * ** ** * ** ** * ** ** * ***** * ***
consensus_7233#0 CAGCAA-CATCAGCAGCAACACCATCACCACCAGCAGCAGCAGCAACACCAT-CAGCAGC 295
consensus_7233#2 CAGCAATCATCCTACGGAAATGCATC----CAAGCAGTCCGGCTATCACAAT-CAGCAGC 160
consensus_7233#1 CAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACC 250
***** * * * * * ** * ** ** *
consensus_7233#0 AAC--GGGCAC-CGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTG 352
consensus_7233#2 ACCA-GGGCAA-TACAGCGAACGGAGGCAACAACAGCAACAACAACAAC-AACGCTAACA 217
consensus_7233#1 ACCCTGGACACGTGCCGGCACCACTGCCACCC-CATCACCATCAACCGCAGATGGCGGCC 309
* * ** ** * * * * * * ** * *
consensus_7233#0 GTCCCT-CTCCTGGCGCAACGGCACCC----TCGCCGGGCGTTGGTGGCCCGAAGAACTT 407
consensus_7233#2 ATCACTACAACCAACCAACTGGCGGTA----GTGGTAACCAT-GGTAACACTTATGGCGG 272
consensus_7233#1 GCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAG 369
* * * * * * * * * * *
consensus_7233#0 CA-TGCCGCTACCGAACGGATACAATC-CGTACCAGATGCAGATGGGCTACCCGAACAAG 465
consensus_7233#2 CGGTAGCGGTAAC-ACTGGCTCCAAG---AACTCGAACAAAGGTGGACGTTATGGTGGAG 328
consensus_7233#1 TATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGAC--ACCCCCCGGACAGG 427
* * * * * * ** * * *
consensus_7233#0 CAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATG 525
consensus_7233#2 GTAA-GGATGA-----ATCTCATAAGTACAGTGGTGTGAGTGCAACA---CAATCCACCG 379
consensus_7233#1 GTCAGCTGCCGCCGGCGATGAATCAGTATCA-GCCAGTAACGCCGCAGCACCACCTCCAT 486
* ** * * ** ** * * *
consensus_7233#0 CAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATC-TGGGCACTCCA----GGGC 580
consensus_7233#2 CAAC--TAGTGCCAGCACCAACACCAACA-CCACCAACTC-GCAGCAATCCAAAAAGGGG 435
consensus_7233#1 CAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATC------AT 540
** * ** ***** ***** ** * ** ** * **
consensus_7233#0 CCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAAT--GCCG----GTGA 634
consensus_7233#2 AAGGGCCACGGGTCGCAGCAGCATTCCAGCGCTGCGCAGAACAAACCAGCCGAGCAGCAG 495
consensus_7233#1 CCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAG 600
* * * * ** * * * **
consensus_7233#0 GTGTCACTCCGACGGGCGTACTGGCACAACCGCAACCCGCCGTGCTCGCTACGGCACCAT 694
consensus_7233#2 GCGTCA-TCGTACGGTTCGTCAGGCACGGGCAAGCAGCACGGAGCCTCGAACGCTAACAG 554
consensus_7233#1 CAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAG 660
* ** ** * * * * * * **
consensus_7233#0 CTCCAGGGTCAGTGCCGGCCCACGGTACCCTGGCCCCTACCAG--CATGC-CGATGGCAC 751
consensus_7233#2 CAACAG---CAAGGTGAACCAA--GTGGCGGAACAGATGGGAGG-CATGCACCTTGGCGG 608
consensus_7233#1 CACGGACAGCAGCGAGGAGGTGT-GAAGTATCGCGAACAGCGGCCCATGTACGTTCCC-C 718
* ** * * * * **** * * *
consensus_7233#0 CGGCGATGGCTCCCCCTGCTACGGCGGCCATACCGGCCGTCTATACGAACTGGAAAATTG 811
consensus_7233#2 CAACAAGGCGTCGTCGGGCTACAATGCCACGAACAGTAG-CAACAACAACAACACGGATC 667
consensus_7233#1 CGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACATGCCG-ATACCATCGCTGTTCAGTAA 777
* * * * *** * * * * * *
consensus_7233#0 GCGATCGATGCTTGGCCAAATACTGGGAAGATGGTGGGTTCTATACAGCGGAAATTACGG 871
consensus_7233#2 GCTGCAGTCGTCC----------------------------------------------- 680
consensus_7233#1 GTAGAAG-CGC------------------------------------------------- 787
* * *
consensus_7233#0 ACACGTCGAAGAACACGTTCGTCGTACACTTTTCTCGAGTACGGCAACTACGAGGAGGTG 931
consensus_7233#2 ------------------------------------------------------------
consensus_7233#1 ------------------------------------------------------------
consensus_7233#0 CTGAAAACGGACTG 945
consensus_7233#2 --------------
consensus_7233#1 --------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||