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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1373 fasta sequence
[TACATATATATATTAGCAACTTTTACTTAACTAACAAACGCACGCACACTTTCGCTCTATTTCCTTGGGAATGTCCTTGGCACCATCCACTACTGGCCGCCGGCCGTTCCAGTGCCGCTTTGGTTTCGCGCTTGATCGTTTGCGCAATTATCCGCAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGCTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGCTCGCGGGCTGCGTTCATTTCTTTGGTCGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGTTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCGACTCCGGCATTGCTTGCTTCGAGCTGTAACTCCAAACGGCGGATGGTTTCCTTGTGGTGGCGTTCAAGACTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCTCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCACCGTGG-CCAGTACATCCGTCTT-CGTGCGGTATAGCAGCAATCGGTGA-CCGGCGGAGGAGTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGCCCACGCGTCCGCGG]
[+] EMBL CNS09KMY [TACATATATATATTAGCAACTTTTACTTAACTAACAAACGCACGCACACTTTCGCTCTATTTCCTTGGGAATGTCCTTGGCACCATCCACTACTGGCCGCCGGCCGTTCCAGTGCCGCTTTGGTTTCGCGCTTGATCGTTTGCGCAATTATCCGCAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGCTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGCTCGCGGGCTGCGTTCATTTCTTTGGTCGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGTTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCGACTCCGGCATTGCTTGCTTCGAGCTGTAACTCCAAACGGCGGATGGTTTCCTTGTGGTGGCGTTCAAGACTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCTCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCA ]
[-] EMBL BM614367 [ tgGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTACAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTTGGAGGACAGTGTCACCGTGG CCAGTACATCCGTCTT CGTGCGGTATAGCAGCAATCGGTGA CCGGCGGAGGAGTTGAGCAACGCAAGTCCTACGTTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGATTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTcgg ]
[-] EMBL BM595635 [ ACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCAATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCACCGTGG CCAGTACATCCGTCTT CGTGCGGTATAGCAGCAATCGGTGA CCGGCGGAGGAGTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGcgg ]
[-] EMBL BM596820 [ CGTGGCCCAGTACATCCGTCTTCCGTGCGGTATAGCAGCAATCGGTGACCCGGCGGAGGAGTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGCCCACGCGTCCGCGG]
[-] EMBL CNS09KMX [ AGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGt ]
consensusID : consensus_7234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1153 fasta sequence
[CAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGGTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGTTCCCGGGCTGCATTCATTTCTTTGGTTGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGCTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCAACTCCGCATTGCTTGCTTCGAGCTGTAACTCCAAACTGCGGATGGTTTCCTTGTGGTGGCGTTCAAGCTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGCTACGCTCTGGGGACGCTCCGACGAACCCGACGACCCTCCCTGGTGCAGGTTAAGCAAATCGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTTCCGTGTTTTGCACGGGGTTTTCGCTCATAATCAAGTTGAAATTCACATCCGCCATCGTCGTGCCATTCCCCTGACTTGTGACAGTCCCACCGTGGCCCGCTGGGACCATTCCTGCCAGCGGAACCATCTGCATACCGACCGCCGACGTGTAATTGGGCCGTCGGATCGGTCGCGTCGTAATGGTCTCAATCTTCGAGTCGGACGTATCGGACGAATCGGAGCCGGGTGCGATCGTGGGAATCGGGGGCGGTTTCACCTTCTCCGGCAGGGGCATCGCTTGCCCACCCATCCGTGCCATGCGTGCCGCCAGCTCGGACCGTTTGCTGTTCGGCGGGTCGGGCGGATCCCGTTCCACCTCCGACAGTGGTTCCTCGACGATCGGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCAATCAGCACGCTCCAAAACTCG]
[-] EMBL BM612400 [CAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGGTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGTTCCCGGGCTGCATTCATTTCTTTGGTTGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGCTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCAACTCCGCATTGCTTGCTTCGAGCTGTAACTCCAAACTGCGGATGGTTTCCTTGTGGTGGCGTTCAAGCTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGCTACGCTCTGGGGACGCTCCGACGAACCCGACGACCCTCCCTGGTGCAGGTTAAGCAAATCGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTTCCGTGTTTTGCACGG ]
[-] EMBL BX621296 [ AGCTGTAACTCCAAACTGCGGATGG TTCCTTGTGGTGGCGTTCAAGCTCTTCCAGCGTTTTGATTNGTTGCTCCAGCTNGGCGTTTGTCTCTCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGCTACGCTCTGGGGACGCTCCGACGAACCCGACGACCCTCCCTGGTGCAGGTTAAGCAAATCGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTTCCGTGTTTTGCATGCGGTTTTCGCTCATAATCAAGTTGAAATTCACATCCGCCATCGTCGTGCCATTCCCCTGACTTGTGACAGTCCCACCGTGGCCCGCTGGGACCATTCCTGCCAGCGGAACCATCTGCATACCGACCGCCGACGTGTAATTGGGCCGTCGGATCGGTCGCGTCGTAATGGTCTCAATCTTCGAGTCGGACGTATCGGACGAATCGGAGCCGGGTGCGATCGTGGGAATCGGGGGCGGTTTCACCTTCTCCGGCAGGGGCATCGCTTGCCCACCCATCCGTGCCATGCGTGCCGCCAGCTCGGACCGTTTGCTGTTCGGCGGGTCGGGCGGATCCCGTTCCACCTCCGACAGTGGTTCCTCGACGATCGGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCAATCAGCACGCTCCAAAACTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7234#0 TACATATATATATTAGCAACTTTTACTTAACTAACAAACGCACGCACACTTTCGCTCTAT 60
consensus_7234#1 ------------------------------------------------------------
consensus_7234#0 TTCCTTGGGAATGTCCTTGGCACCATCCACTACTGGCCGCCGGCCGTTCCAGTGCCGCTT 120
consensus_7234#1 ------------------------------------------------------------
consensus_7234#0 TGGTTTCGCGCTTGATCGTTTGCGCAATTATCCGCAGCACGTGCGGATCGGTTATCTGGT 180
consensus_7234#1 ----------------------------------CAGCACGTGCGGATCGGTTATCTGGT 26
**************************
consensus_7234#0 CGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCG 240
consensus_7234#1 CGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCG 86
************************************************************
consensus_7234#0 CTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGCTCCAGCT 300
consensus_7234#1 CTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGGTCCAGCT 146
**************************************************** *******
consensus_7234#0 GCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCC 360
consensus_7234#1 GCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCC 206
************************************************************
consensus_7234#0 GGTCATGCCGAGCTTCTGCTAGCTGCTCGCGGGCTGCGTTCATTTCTTTGGTCGCATCTT 420
consensus_7234#1 GGTCATGCCGAGCTTCTGCTAGCTGTTCCCGGGCTGCATTCATTTCTTTGGTTGCATCTT 266
************************* ** ******** ************** *******
consensus_7234#0 CAGTGGTTAGTTTTTCCTCTGCAAGCTGTTTTTCAAGCGCATCGAGCGTTGCTTTCTGCC 480
consensus_7234#1 CAGTGGTTAGTTTTTCCTCTGCAAGCTGCTTTTCAAGCGCATCGAGCGTTGCTTTCTGCC 326
**************************** *******************************
consensus_7234#0 GTGCCGACTCCGGCATTGCTTGCTTCGAGCTGTAACTCCAAACGGCGGATGGTTTCCTTG 540
consensus_7234#1 GTGCCAACTCCG-CATTGCTTGCTTCGAGCTGTAACTCCAAACTGCGGATGGTTTCCTTG 385
***** ****** ****************************** ****************
consensus_7234#0 TGGTGGCGTTCAAGACTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTC 600
consensus_7234#1 TGGTGGCGTTCAAG-CTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTC 444
************** *********************************************
consensus_7234#0 TCGCGTTCCGTCTCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATT 660
consensus_7234#1 TCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATT 504
************ ***********************************************
consensus_7234#0 GGTACGCTTCAGTTCACG-----TTCCACGCAGCACCA-CGATTCGA--TCGCAGCAAGC 712
consensus_7234#1 GGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGC 564
************ ** * * * **** * * * **** ** * **
consensus_7234#0 AACGCCTGTCGCTCGGTTT--CGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCAT 770
consensus_7234#1 TACGCTCTGGGGACGCTCCGACGAACCCGA-CGACCCTCCCTGGTGCAGGTTAAGCAAAT 623
**** * ** * ** *** * * * * * * *** **
consensus_7234#0 CCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCA 830
consensus_7234#1 CGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTT 683
* *** *** * ** * ** ***** ** * *
consensus_7234#0 CCGTGGCCAGTACATCCGTCTTCGTGCGGTAT--AGCAGCAATCGGTGACCGGCGGAGGA 888
consensus_7234#1 CCGTGTTTTGCACGGG-GTTTTCGCTCATAATCAAGTTGAAATTCACATCCGCCATCGTC 742
***** * ** ** **** * ** ** * *** *** * *
consensus_7234#0 GTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTA 948
consensus_7234#1 GTGCCATTCCCCTGACTTGTGACAGTCCCACCGTGGCCCGCTGGGACCATT---CCTGCC 799
** * * * * ** * ** ** * **
consensus_7234#0 GGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTC 1008
consensus_7234#1 AGCGGAACCATCTGCATACCGACCGCCGA--CGTGTAATTGGGCCGTCGGATCGGTC--G 855
** *** * * * *** ** * * * ** * * *** **
consensus_7234#0 CGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGA--AATTGGATGGACCGTAG 1066
consensus_7234#1 CGTCGTAATGGTCTCAATC--TTCGAGTCGGACGTATCGGACGAATCGGA--GCCGGGTG 911
** *** * ** * **** * ********** *** *** * * * *
consensus_7234#0 CGATCG--GAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTAC 1124
consensus_7234#1 CGATCGTGGGAATCGGGGGCGGTTTCACCTTCTCCGGCAGGGGCA-----TCGCT--TGC 964
****** * ** * *** *** * * * * * * ***** * *
consensus_7234#0 CTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGC 1184
consensus_7234#1 CCAC-CCATCCGTGCCAT---GCGTGCCGC----CAGCTCGGACCGTTTGCTGTTCGGCG 1016
* ** * * * ***** * ***** ** *** * ** * ** ** *** *
consensus_7234#0 TGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCC 1244
consensus_7234#1 GGTCGGGCGGATCCCGTTCCA-----CCTCCGACAGTGGTTCCTCGACGATCGGTTCAC- 1070
** ** ** *** * ** ** ** ** * * * ** ** *
consensus_7234#0 CAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTT 1304
consensus_7234#1 --GTTCCACGCAGCACCACGAT------TCGATCGCAGCAAGCAACGCCTGTCGCTCGGT 1122
*** * ** * * **** * ** * * * * ** *
consensus_7234#0 ATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGCCCACG 1364
consensus_7234#1 -TTCGGCTTCAATCA--GCACGCTCCAAAACTCG-------------------------- 1153
** ** * * * * * * * * ***
consensus_7234#0 CGTCCGCGG 1373
consensus_7234#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||