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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 931 fasta sequence
[CACACACAGCACACACACACACTAGGCGATATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGGCCGCTCTCTCGGTGTTCCTCCTTTTCTTCCACAGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGNTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACCAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGCCGAGGGTCAGAAAAACGCATTCTCAATACGGCTCGTTAAGGTGGCCGATATGATACGGTATGCCGGGTACTGTATAGGGAAGGTGGACCAAACCACCGGCCACTGGTCACATGGTATACAGACCGCCACACT]
[+] EMBL BX623744 [CACACACAGCACACACACACACTAGGCGATATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGGCCGCTCTCTCGGTGTTCCTCCTTTTCTTCCACAGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGNTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTGGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGTGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAANGCTTACATGACAAGCTTTTCCCTGGCCCTG ]
[-] EMBL CNS08RRF [ ATATCGGTTTCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTTTCTGGCGATTTATGCAGCGACCAAGGCTTAAATGACCAGCTTTTCC ]
[+] EMBL CNS08RRE [ CCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACCAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGCCGAGGGTCAGAAAAACGCATTCTCAATACGGCTCGTTAAGGTGGCCGATATGATACGGTATGCCGGGTACTGTATAGGGAAGGTGGACCAAACCACCGGCCACTGGTCACATGGTATACAGACCGCCACACT]
consensusID : consensus_7241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[CCGGTAGAATAGGTAGGCTGTAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACAAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGC]
[+] EMBL BM613261 [CCGGTAGAATAGGTAGGCTGTAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGA ]
[+] EMBL BX616309 [ AACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACAAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGC]
consensusID : consensus_7241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence
[CCGCGGACGCGTGGGAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTT-AAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAA]
[+] EMBL BM623076 [CCGCGGACGCGTGGGAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTT AAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAA]
[+] EMBL CNS08YAO [ tactggTGTTTACCCA CTGGTC CCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCGTTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACCGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAAGCGCGTGGCCGACGAAATTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7241#1 CCGGTAGAATAGGTAGGCTGTAGCGCACACACGGCCCATACAACACACACAGCACACACA 60
consensus_7241#2 ------CCGCGGACGCGTGGGAGCGCACACACGGCCCATACAACACACACAGCACACACA 54
consensus_7241#0 -------------------------------------------CACACACAGCACACA-- 15
***************
consensus_7241#1 GACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACAC 120
consensus_7241#2 GACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACAC 114
consensus_7241#0 --CACACACTAGGCGATATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACAC 73
************** *******************************************
consensus_7241#1 TCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAAC 180
consensus_7241#2 TCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAAC 174
consensus_7241#0 TCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAAC 133
************************************************************
consensus_7241#1 AGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTG------ 234
consensus_7241#2 AGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTG------ 228
consensus_7241#0 AGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGGCCGCT 193
******************************************************
consensus_7241#1 -----------------------------TAATTACGGGCGGTTCGGATGGAATCGGCAA 265
consensus_7241#2 -----------------------------TAATTACGGGCGGTTCGGATGGAATCGGCAA 259
consensus_7241#0 CTCTCGGTGTTCCTCCTTTTCTTCCACAGTAATTACGGGCGGTTCGGATGGAATCGGCAA 253
*******************************
consensus_7241#1 AGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGA 325
consensus_7241#2 AGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGA 319
consensus_7241#0 AGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGA 313
************************************************************
consensus_7241#1 AGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAA 385
consensus_7241#2 AGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAA 379
consensus_7241#0 AGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAA 373
************************************************************
consensus_7241#1 AGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCT 445
consensus_7241#2 AGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCT 439
consensus_7241#0 AGTGNTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCT 433
**** *******************************************************
consensus_7241#1 GGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCAT 505
consensus_7241#2 GGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCAT 499
consensus_7241#0 GGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCAT 493
************************************************************
consensus_7241#1 CCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGC 565
consensus_7241#2 CCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGC 559
consensus_7241#0 CCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGC 553
************************************************************
consensus_7241#1 GGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTAT 625
consensus_7241#2 GGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAA--------------------- 598
consensus_7241#0 GGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTAT 613
*** ***********************************
consensus_7241#1 CATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGC 685
consensus_7241#2 ------------------------------------------------------------
consensus_7241#0 CATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTATCTGGCGATTTATGCAGC 673
consensus_7241#1 GACCAAGGCTTACATGACAAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGG 745
consensus_7241#2 ------------------------------------------------------------
consensus_7241#0 GACCAAGGCTTACATGACCAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGG 733
consensus_7241#1 CATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAA 805
consensus_7241#2 ------------------------------------------------------------
consensus_7241#0 CATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAA 793
consensus_7241#1 TCCAGC------------------------------------------------------ 811
consensus_7241#2 ------------------------------------------------------------
consensus_7241#0 TCCAGCCGAGGGTCAGAAAAACGCATTCTCAATACGGCTCGTTAAGGTGGCCGATATGAT 853
consensus_7241#1 ------------------------------------------------------------
consensus_7241#2 ------------------------------------------------------------
consensus_7241#0 ACGGTATGCCGGGTACTGTATAGGGAAGGTGGACCAAACCACCGGCCACTGGTCACATGG 913
consensus_7241#1 ------------------
consensus_7241#2 ------------------
consensus_7241#0 TATACAGACCGCCACACT 931
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||