These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 761 fasta sequence [CCCAGGNTTNTCGAGGCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCGATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTACAAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGACCACCG-TAGTGGGAAAATCTGACGAAACGTTGAAGGCGGAAGCGAA-CTGG-CCGAAAAGCAGGACAATCCGGCCAACTTTGGTATCGGCTGCATGAAGCACTGCATTTGCGAAGTTCCCGGCCAGTTGCCGTGCCCGGGTGTTGTACCCGTCCCAAAGCACATGCGAGGCAAGTTTAAGTACCAAATGAAGGAATAATCTCGCGCACGAGAAGGTCGGACGCAAAAGAAGGATAAATAAA-TTTGTTTAGTTTTTTAGCTTCT------AAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCCGCCGCC] [+] EMBL AL695956 [CCCAGGNTTNTCGAGGCACAATCTTACGCCNAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCCATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTACAAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGACCACCGCTACTGGGAAAATCTGACGAAA ] [+] EMBL CNS0907O [ GAGGCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGTCTTTAACATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCGATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCTCCAAATACAGTACAAGAACCCGAA GTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGACCACCG TAGTGGGAAAATCTGACGAAACGTTGAAGGCGGAAGCGAA CTGGACCGAAAAGCAGGACAATCCGGCCAACTTTGGTATCGGCTGCATGAAGCACTGCATTTGCGAAGTTCCCGGCCAGTTGCCGTGCCCGGGTGTTGTACCCGTCCCAAAGCACATGCGAGGCAAGTTTAAGTACCAAATGAAGGAATAATCCCGCGCACGAGAAGGTCGGACGCAAAAGAAGGATAAATAAA TTTGTTTAGTTTTTTAGCTTCT AAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCCGCCGCC] [-] EMBL CNS0907P [ AGGCACATTCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGTCTTTAACATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCGATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTAAAAAACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCTCCAAATACAGTACAAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCCTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGACCACCG TAGTGGGAAAATCTGACGAAACGTTGAAGGCGGAAGCGAAGCTGG CCGAAAAGCAGGACAATCCGGCCAACTTTGGTATCGGCTGCATGAAGAACTGCATTTGCGAAGTTCCCGGCCAGTTGCCGTGCCCGGGTGTTGTACCCGTCCCAAAGAACATGCGAGGCAAGTTTAAGTACCAAATGAAGGAAT ] [+] EMBL BM589200 [ ccGCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCCATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTACAAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGACCACCG TAGTGGGAAAATCTGACGAAACGTTGAAGGCGGAAGCGAAGCTGG CCGAAAAGCAGGACAATCCGGCCAACTTTGGTATCGGCTGCATGAAGCACTGCATTTGCGAAGTTCCCGGCCAGTTGCCGTGCCCGGGTGTTGTACCCGTGCCAAAGCACATGCGAGGCAAGTTTAAGTACCAAATGAAGGAATAATCTCGCGCACGAGAAGGTCGGACGCAAAAGAAGGATAAATAAA ] [-] EMBL CNS08Q10 [ AAAAAACATGTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCGATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGGGAGCAC ] [+] EMBL CNS08Q0Z [ ACACATGTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCGATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTACAAGAACCCGAA GTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTCCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGACCACCG TAGTGGGAAAATCTGACGAAACGTTGAAGGCGGAAGCGAA CTGG CCGAAAAGCAGGACAATCCGGCCAACTTTGGTATCGGCTGCATGAAGCACTGCATTTGCGAAGTTCCCGGCCAGTTGCCGTGCCCGGGTGTTGTACCCGTGCCAAAGCACATGCGAGGCAAGTTTAAGTACCAAATGAAGGAATAATCTCGCGCACGAGAAGGTCGGACGCAAAAGAAGGATAAATAAATTTTGTTTAGTTTTTTAGCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGGGCggg ] consensusID : consensus_7243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCGGACGCGTGGGGTGGCACATTGCCTATTTTTCCACAACAAATAGTCCCCCCTCGAGGCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCCATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTACAAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGCACCACCGTAGTGGGAAAATCTGACGAAACGTTGAAGGCGGACAGCGAAGCTGGCCGAAAAGCAGGACAATCCGGCCAACTTTTGGTATCGGCTGCATGAAGCACTGGCCATTTGCGAAGTTCCCGGGCCAGTGCCCCGGGGCCCCGGGTGGTTGTACCCGTGCCAAAGCACA] [+] EMBL BM599698 [CCGCGGACGCGTGGGGTGGCACATTGCCTATTTTTCCACAACAAATAGTCCCCCCTCGAGGCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTTGTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCTGCCAAGATGCCCTTCATGAAAGGAAAGGCTCCCATTCGGAGAACCTTGCAGTACCTGAATGCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTACGGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTACAAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGCTGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAGATTCTACAACACCTGCACCACCGTAGTGGGAAAATCTGACGAAACGTTGAAGGCGGACAGCGAAGCTGGCCGAAAAGCAGGACAATCCGGCCAACTTTTGGTATCGGCTGCATGAAGCACTGGCCATTTGCGAAGTTCCCGGGCCAGTGCCCCGGGGCCCCGGGTGGTTGTACCCGTGCCAAAGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7243#0 ---------------------------------------------CCCAGGNTTNTCGAG 15 consensus_7243#1 CCGCGGACGCGTGGGGTGGCACATTGCCTATTTTTCCACAACAAATAGTCCCCCCTCGAG 60 ***** consensus_7243#0 GCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTT 75 consensus_7243#1 GCACAATCTTACGCAAAGTCGGCAATTGCTGCTCAACAAAAACACATTTATCTGTGTCTT 120 ************************************************************ consensus_7243#0 GTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCT 135 consensus_7243#1 GTTGGCTATTGCTGCCTTTAATATTTATTTAAACAGTGAAAGTGAACCTTCTACCTCGCT 180 ************************************************************ consensus_7243#0 GCCAAGATGCCCTTCATGAAAGGAAAGGCTCCGATTCGGAGAACCTTGCAGTACCTGAAT 195 consensus_7243#1 GCCAAGATGCCCTTCATGAAAGGAAAGGCTCCCATTCGGAGAACCTTGCAGTACCTGAAT 240 ******************************** *************************** consensus_7243#0 GCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTAC 255 consensus_7243#1 GCCGGCCAGCTGATGCTGAAGGATAAGGTAAAAATATTCAGCGTGAATTACAACACGTAC 300 ************************************************************ consensus_7243#0 GGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTAC 315 consensus_7243#1 GGAGAGCACCATGAAGGAGCCAGAGATTTCGTGTTTTGGAACATTCCCCAGATACAGTAC 360 ************************************************************ consensus_7243#0 AAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGC 375 consensus_7243#1 AAGAACCCGAAGGTGCAAGTGGTAACGTTCAAAAACATGACCCCGTCTCCCTTTATTCGC 420 ************************************************************ consensus_7243#0 TGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAG 435 consensus_7243#1 TGCTATTTTGAAAACGGCAAACAGATGCTGATTGATATTGACAGTAAAAACCGGCAGGAG 480 ************************************************************ consensus_7243#0 ATTCTACAACACCTG-ACCACCGTAGTGGGAAAATCTGACGAAACGTTGAAGGCGGA-AG 493 consensus_7243#1 ATTCTACAACACCTGCACCACCGTAGTGGGAAAATCTGACGAAACGTTGAAGGCGGACAG 540 *************** ***************************************** ** consensus_7243#0 CGAA-CTGGCCGAAAAGCAGGACAATCCGGCCAACTTT-GGTATCGGCTGCATGAAGCAC 551 consensus_7243#1 CGAAGCTGGCCGAAAAGCAGGACAATCCGGCCAACTTTTGGTATCGGCTGCATGAAGCAC 600 **** ********************************* ********************* consensus_7243#0 TG--CATTTGCGAAGTTCCCGGCCAGTTGCCGTG----CCCGGGTG-TTGTACCCGTCCC 604 consensus_7243#1 TGGCCATTTGCGAAGTTCCCGGGCCAGTGCCCCGGGGCCCCGGGTGGTTGTACCCGTGCC 660 ** ****************** * **** * ******** ********** ** consensus_7243#0 AAAGCACATGCGAGGCAAGTTTAAGTACCAAATGAAGGAATAATCTCGCGCACGAGAAGG 664 consensus_7243#1 AAAGCACA---------------------------------------------------- 668 ******** consensus_7243#0 TCGGACGCAAAAGAAGGATAAATAAATTTGTTTAGTTTTTTAGCTTCTAAAAAAAAAAAA 724 consensus_7243#1 ------------------------------------------------------------ consensus_7243#0 AAAAAAAAAAAAGGCCACATGTGCCCGGGCCGCCGCC 761 consensus_7243#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||