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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1384 fasta sequence
[AAACTTCTGTTGTTGGTAACAAGTTCCCAACACGCGTCCCACACTTTCTTTCTACAACGATGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATGAATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGCCACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCAATCCGCAGAATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGG-CCGAAAAGAGTGACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGAT-GAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAACGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACACACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTCGAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGATGATTATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGA-C-CTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCAGGATGAG-CCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAAACTCAA]
[+] EMBL CNS08YNF [AAACTTCTGTTGTTGGTAACAAGTTCCCAACACGCGTCCCACACTTTCTTTCTACAACGATGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATGAATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGCCACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCAATCCGCAGAATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGG CCGAAAAGAGTGACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGATAGAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAGCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAG ]
[+] EMBL CNS08L6U [ aAAGT CCA ACGCGTCCCACACTTTCTTTCTACAACGATGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATGAATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGCCACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCAATCCGCAGAATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGGCCCGAAAAGAGTGACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTCCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGAT GAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGAGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAACGAGCTAAATGAGGCCAAAAAAAAAATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTATTGCACATAATGTCCTCCG ]
[-] EMBL CNS08YNG [ CCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTCTCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCCGGGTGATAGTGGAT GAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAGCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACACACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTCGAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGATGATTATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGA C CTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCAGGATGAG CCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAAACTC ]
[-] EMBL CNS08L6V [ CAGTTGTACCGAATCCGGGTGATAGTGGAT GAAAAGGTACGTGAGCAAGAAAGCTACTCTTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGAACATCAACGAGCTAAATGAGGCCCATTCGCATATCAACATCCATCGAATATCGGGCAGGCTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGGGCTGGCCTGTGTGAAGCAAGTGTTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACAAACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTCGAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGGTGATTATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGACC CTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCAGGATGAGCCCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAAACTCAA]
[+] EMBL BX622051 [ GTGGAT GAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGAACAGCAACGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGTACTTTGTAGAGTACGGCGGTGTGGAGCAGATGTTACGATCGTTCTACCGTCGATCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTTAAGCAAGTGTTGTACAGAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAGCTAATACACACGTACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTTATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTATTGCAATGCGTAGAAGAAGTCGAAAAGCTGCTTCCTGACATCCATCAAGCAAGTTTTGGGTTCGGCGAAGAGAGCTTGATTCAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACTGACTCAGATGATTATGAATCGACCGAAGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACCGATACGGA CGCT AATCCGAATGAAAATGTACTAGAGAAGCTAATGAATCTTAAGCTGTCAGGGTGAGTCCTGCGTTGTAAAATTAATAT ]
consensusID : consensus_7259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence
[GGCAAGAATCCCCCCGAGGTTNNAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACGAATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGCCACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCAATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGG-CGAAAAGAGTGACTTTTCCG-CGAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTCTTGATTTGGACAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTCGTACCGAATCCGGGTGATAGTGGATGAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGAACAGCAACCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGT]
[+] EMBL AL930730 [GGCAAGAATCCCCCCGAGGTTNNAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACGAATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGCCACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCAATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGG CGAAAAGAGTGACTTTTCCG CGAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTCTTGATTTGGACAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTCGTACCGAATCCGGGTGATAGTGGATGAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATCGCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGAACAGCAACCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACGCTGGCGT]
[+] EMBL BX614369 [ GGAGTGCAATCATATCGACGTATTGCTGGATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACGAATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAACCGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGCCACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCTGCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCAATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGGCCGAAAAGAGTGACTTTTCCGCCGAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTCTTGATTTGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7259#0 AAACTTCTGTTGTTGGTAACAAGTTCCCAACACGCGTCCCACACTTTCTTTCTACAACGA 60
consensus_7259#1 ---------------------------------------GGCAAGAATCCCCC-CGAGGT 20
** * * * *
consensus_7259#0 TGGAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGG 120
consensus_7259#1 TNNAAGATAATTTAAGTTTTCGTACAGTTTTGGAGTGCAATCATATCGACGTATTGCTGG 80
* *********************************************************
consensus_7259#0 ATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAATG 180
consensus_7259#1 ATCTACCCGAGCTTGATCTAGAACATGAAAGTAATCTAGTGTTGGATGTTTTTCCCAACG 140
********************************************************** *
consensus_7259#0 AATGCACCTTTACGGCAGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAAC 240
consensus_7259#1 AATGCACCTTTACGGCCGCACCGTATCATGCCAGAATACCTTTACCCCAGCCAGCACAAC 200
**************** *******************************************
consensus_7259#0 CGGGGAAAGCGTTTCCGGAAAGCATTGATTATGAGAAAAATACGGTATCGTTTCGTGTGC 300
consensus_7259#1 CGGGGAAATCGTTTCCAGAAAGCATAGATTATGAGAAAAATACGGTAACGTTTCGTGTGC 260
******** ******* ******** ********************* ************
consensus_7259#0 CACTGGAAGCTAAAGCTAAAGCTGTTGATAACGATACACCATCTTTCCCGTACGGTTTCT 360
consensus_7259#1 CACTGGAAGTTAAAGCTAAAGCGGTTGATAACAATACACCATCTTACCCGTACGGTTTCT 320
********* ************ ********* ************ **************
consensus_7259#0 GCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTCCCCA 420
consensus_7259#1 GCCATTTCTATAGCGGTCCCCTTGCATTGGAAACAAGCCAAGAGCTGAAGGTGCTTCCCA 380
******************************************************* ****
consensus_7259#0 ATCCGCAG-AATGTAGCTTTTCCCAAAGGTTGGAAATGAAGGAAGCGGCCGAAAAGAGTG 479
consensus_7259#1 ATCCGCAGGAATGCAGCTTTTCCCAACGGTTGGAAATGAAGGAAGCGGC-GAAAAGAGTG 439
******** **** ************ ********************** **********
consensus_7259#0 ACTTTTCCGCCGAACACTATGGAATGGATTATATTCAGTTTAGCATCGATCAGCTGGGTC 539
consensus_7259#1 ACTTTTCCGC-GAACACTACAGCATGGACTATATTCAGTTCAGCATCGATCAGCTGGGTC 498
********** ******** * ***** *********** *******************
consensus_7259#0 TCGATTTGGAAAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTTGTACCGAATCC 599
consensus_7259#1 TTGATTTGGACAACTTTCCCGCTCCCAGCAAACTTACGGCCGACCAGTCGTACCGAATCC 558
* ******** ************************************* ***********
consensus_7259#0 GGGTGATAGTGGATGAAAAGGTACGTGAGCAAGAAAGCTACACCTCGATCGAAGATCATC 659
consensus_7259#1 GGGTGATAGTGGATGAAAAGGTACGTGAACAAGAAAGCTACACCTCGATCGAAGATCATC 618
**************************** *******************************
consensus_7259#0 GCGCAGTGCTGCTCGGATTGATCGATATAGTGCTGGCGGCTGTGTATGATCAGCTGACGA 719
consensus_7259#1 GCGCAGTGCTGCTCGGATTGATCGATATACTGCTGGCGGCTGTGTACGATCAGCTGACGA 678
***************************** **************** *************
consensus_7259#0 ACATCAAC-GAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACG 778
consensus_7259#1 ACAGCAACCGAGCTAAATGAGGCCAATTCGCATATCAACATCCATCGAATATCGGGCACG 738
*** **** ***************************************************
consensus_7259#0 CTGGCGTACTTTGTAGAGTACGGCGGTGTTGAGCAGATGTTACGATCGTTCTACCGTCGA 838
consensus_7259#1 CTGGCGT----------------------------------------------------- 745
*******
consensus_7259#0 TCCTGTACCTATCCTTACTACAGAAACAAGGACATTGCGCTGGCCTGTGTGAAGCAAGTG 898
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 TTGCACATAATGTCCTCCGAAGACAGGAAGCAGTGGATACAGCAGCAACTAATACACACG 958
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 TACGAAGCATTCAAGCGAACGGACTGTGCCGTCCTGAACCATTACTTTATCAAGGATTTT 1018
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ATTCGCTACGTGGAGCTGGGTTTAAACGAGGAGACATTGCTGCAATGCGTAGAAGAGGTC 1078
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 GAAAAGCTGCTTCCTGATATCCATCAAGCAAGTCTTGAGTTCGGCGAGGAGAGCTTGCTT 1138
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 CAAAAATTGCTGCAGGATATAATGGGACAGGAGGAATCCGATTCTACCGACTCAGATGAT 1198
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 TATGAATCGTCCGATGAAGATAGTGAGGAGAGTGACAGTGATAATGAATCGGTTGGAACC 1258
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 GATACGGACCTCAATCCGAATGAAAATGTACTGGAGAAGCTAATGAACCTTAAGCTGTCA 1318
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 GGATGAGCCTGCGTTGTAAAATTAATATTGGAGGAAAAACACATCAAAATTGGACTCAAA 1378
consensus_7259#1 ------------------------------------------------------------
consensus_7259#0 ACTCAA 1384
consensus_7259#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||