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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTACAGAACTACCTAAACGGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAG--AAAGAAAGCCAGGTATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA--GTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAA-GATATCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAATAGACGCGATACTAAT-AAACCCAATAAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTCAAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAGTTTTTTTTCTGACGCCTTCGAGAGACAATTATGTATTTCCCCTTTATCTTTCGNTATCTTCCACTGAAATATATT]
[+] EMBL BM591041 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTACAGAACTACCTAAACGGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTAAACTATCGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAG AAAGAAAGCCAGGTATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCCACAAGTGGACAGCAGGA GTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAAGGAT TCCTTTTTTGTTTTGTAAAA ]
[+] EMBL BX608517 [ CTAATGCCGTGG AAAAAAGCCAGCATCAACAAAAATAGTAAGCAAAGCGATAGTAGGCACATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCACGTTTAATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA GTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAAAACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAA GATATCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAATAGACGCGATACTAAT AAACCCAATAAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTCAAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAGTTTTTTTTCTGACGCCTTCGAGAGACAATTA ]
[+] EMBL BX621723 [ CCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAG AAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGAGTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAA GGTTTCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAATAGA CGATACTAATAAAACCCATTGAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTCAAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAG TTTTTTTCTGACGCCTTCGAGAGACAATTATGTATTTCCCCTTTATCTTTCGNTATCTTCCACTGAAATATATT]
consensusID : consensus_7261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 646 fasta sequence
[ACCGACCGACAGCGATCGATCATTTACAAGATGTGTACAGAACTACCTAAACAGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATCCGCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGAGTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACNAAAGATCATCATGCAAGAGTTTCTCTTTAAG]
[+] EMBL BX626974 [ACCGACCGACAGCGATCGATCATTTACAAGATGTGTACAGAACTACCTAAACAGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGAGTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACNAAAGATCATCATGCAAGAGTTTCTCTTTAAG]
[+] EMBL BM594302 [ CCGCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCA ]
[+] EMBL BM592534 [ CCGCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGA ]
consensusID : consensus_7261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[CCGCCCACGCGTCCGATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCACGTTTAATGAACAGAAGTTTTGTTTTAAGTCTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAGGAGTGCCCGACAAGTGGACAGCAGGAGTTCGATATGCGT]
[+] EMBL BM624884 [CCGCCCACGCGTCCGATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCACGTTTAATGAACAGAAGTTTTGTTTTAAGTCTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAGGAGTGCCCGACAAGTGGACAGCAGGAGTTCGATATGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7261#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTACAGAACT 60
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 ----------------ACCGACCGACAGCGATCGATCATTTACAAGATGTGTACAGAACT 44
consensus_7261#0 ACCTAAACGGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGC 120
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 ACCTAAACAGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGC 104
consensus_7261#0 AAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTA 180
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 AAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATCCGCGTTTTAGCATATTA 164
consensus_7261#0 GTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGC 240
consensus_7261#2 -CCGCCCACGCGTCCGA-TCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGC 58
consensus_7261#1 GTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGC 224
* * ** ************************************* ****
consensus_7261#0 AGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAACTATTGCGCAGAATTATTAA 300
consensus_7261#2 AGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAA 118
consensus_7261#1 AGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAA 284
************************************** * *******************
consensus_7261#0 TGACATAGTGGGAACAGACAGAAAGAGATACACAG--AAAGAAAGCCAGGTATCTATCAC 358
consensus_7261#2 TGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCAC 178
consensus_7261#1 TGACATAGTGGGAACAGACAGAAAGAGATACACAG--AAAGAAAGCCAGATATCTATCAC 342
****************************** **** ************ **********
consensus_7261#0 GTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGAC 418
consensus_7261#2 GTTTAATGAACAGAAGTTTTGTTTTAAGTCTAAATGTATTCCACATACACACAGGGCGAC 238
consensus_7261#1 GTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGAC 402
**** ************************ ******************************
consensus_7261#0 GACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA 478
consensus_7261#2 GACAAGCTCGATAGGTTTAAATAATCTAGCAA-GGAGTGCCCGACAAGTGGACAGCAGGA 297
consensus_7261#1 GACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA 462
**** *************************** ***************************
consensus_7261#0 GT--TCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATG 536
consensus_7261#2 GT--TCGATATGCGT--------------------------------------------- 310
consensus_7261#1 GTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATG 522
** ***********
consensus_7261#0 CGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAAT 596
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 CGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAAT 582
consensus_7261#0 TTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTT 656
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 TTGATTGGTTTTAAATCCCTTTTATTTGTTACNAAAGATCATCATGCAAGAGTTTCTCTT 642
consensus_7261#0 TAAGATATCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAA 716
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 TAAG-------------------------------------------------------- 646
consensus_7261#0 TAGACGCGATACTAATAAACCCAATAAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTC 776
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 ------------------------------------------------------------
consensus_7261#0 AAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAGTTTT 836
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 ------------------------------------------------------------
consensus_7261#0 TTTTCTGACGCCTTCGAGAGACAATTATGTATTTCCCCTTTATCTTTCGNTATCTTCCAC 896
consensus_7261#2 ------------------------------------------------------------
consensus_7261#1 ------------------------------------------------------------
consensus_7261#0 TGAAATATATT 907
consensus_7261#2 -----------
consensus_7261#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||