|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1354 fasta sequence
[CCGGCTGCTGTTATCGGTTCGTTCTGGGTGTTTGTGGTGCTGCGGTTCCTTACGGCCG-GGCCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGTGGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGGCCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCTCCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG-GTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC-TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGGAGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGAATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTTTTTAGAATAGTGCAGTCAGTCCGTTCCTCTTTACCTCCGTTCGGATGTGACATTGCGGCACCTCTCGCTGTGCTGTGACAGTGCATTATCTCCCAAGGAACACTATGTGTTCAGTAGCTGCGGAGGAAAGGGAATGGTCGGAATGTGTCCTAATCGCTTATGAGCGTGGAAGCGAATAAATGTAAACGAGTTTTTTTTAAATATAAATTACCTCTTT]
[+] EMBL BM628908 [CCGGCTGCTGTTATCGGTTCGTTCTGGGTGTTTGTGGTGCTGCGGTTCCTTACGGCCGTGGCCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGTGGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGGCCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCTCCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG GTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCAACGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATCTTACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCT ]
[+] EMBL BM642024 [ CCG GGCCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGTGGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGGCCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCTCCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG GTGCGGTAACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTG ]
[+] EMBL BX617514 [ TGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG GTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTT ]
[+] EMBL BM590945 [ ccgcGGACGCGTG GG CGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCC ]
[+] EMBL BM624850 [ ccgGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGGAGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGAATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTTTTTAGAATAGTGCAGTCA ]
[+] EMBL BX628738 [ CTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGGAGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGAATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTTTTTAGAATAGTGCAGTCAGTCCGTTCCTCTTTACCTCCGTTCGGATGTGACATTGCGGCACCTCTCGCTGTGCTGTGACAGTGCATTATCTCCCAAGGAACACTATGTGTTCAGTAGCTGCGGAGGAAAGGGAATGGTCGGAATGTGTCCTAATCGCTTATGAGCGTGGAAGCGAATAAATGTAAACGAGTTTTTTTTAAATATAAATTACCTCTTT]
consensusID : consensus_7277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[GATCGCACGAGGTGGATGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCGTTCCCCACCGNGTTGATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAAGT]
[+] EMBL BX469633 [GATCGCACGAGGTGGATGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCGTTCCCCACCGNGTTGATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7277#0 CCGGCTGCTGTTATCGGTTCGTTCTGGGTGTTTGTGGTGCTGCGGTTCCTTACGGCCGGG 60
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 CCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGT 120
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 GGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGG 180
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 CCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCT 240
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 CCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGT 300
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 CGGGCAATGTGGACGGTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGC 360
consensus_7277#1 -----------GATCGCACGAGGTGGATGCTGGAGCAGGCGGCCAAACGTAACAACCTGC 49
** * ** * *********************************
consensus_7277#0 CGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCAT 420
consensus_7277#1 CGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCAT 109
************************************************************
consensus_7277#0 CGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCA 480
consensus_7277#1 CGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCA 169
************************************************************
consensus_7277#0 AAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCC 540
consensus_7277#1 AAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCC 229
************************************************************
consensus_7277#0 AGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCG 600
consensus_7277#1 AGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCG 289
************************************************************
consensus_7277#0 AGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGC 660
consensus_7277#1 AGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGC 349
************************************************************
consensus_7277#0 TCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCT 720
consensus_7277#1 TCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCT 409
************************************************************
consensus_7277#0 CGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGC- 779
consensus_7277#1 CGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCG 469
***********************************************************
consensus_7277#0 TTCCCCACCGTTT--ATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGG 837
consensus_7277#1 TTCCCCACCGNGTTGATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAA-GT-- 526
********** * **************************************** **
consensus_7277#0 GCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGG 897
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 GCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCG 957
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 GTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGG 1017
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 AGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGA 1077
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 ATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTT 1137
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 TTTAGAATAGTGCAGTCAGTCCGTTCCTCTTTACCTCCGTTCGGATGTGACATTGCGGCA 1197
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 CCTCTCGCTGTGCTGTGACAGTGCATTATCTCCCAAGGAACACTATGTGTTCAGTAGCTG 1257
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 CGGAGGAAAGGGAATGGTCGGAATGTGTCCTAATCGCTTATGAGCGTGGAAGCGAATAAA 1317
consensus_7277#1 ------------------------------------------------------------
consensus_7277#0 TGTAAACGAGTTTTTTTTAAATATAAATTACCTCTTT 1354
consensus_7277#1 -------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||