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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence
[AGAATTGCCNGAGGTTATGTGGAGCTGATACTGGCACAACANGTGTGCTTNGANNGCGTCACGGAGCGCATCAACGGCAATGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACTGCCGCGTGCTTGATACTTGCACTTGAAGCGCTATCCAGGTCGGGCTGCGCAGTGTGTTCAAAAAGCTTGAACAANGCTTGGTGTTCCTTCCCGGTATACGTAGCTNGGGACATTTTGCGGCCGTTCTTGACGGGGGTCGCAAAGGTGTTGAAAAGCTGTGGACCGTTCTGGCAACAATATCTGACCCCGGTGCAGAAAAATGGATTTCCTTTGGTACGGCTCGACCTTGTTACCGGGGCTTGGGTTGGGAAACAACATTCCGGGGCTCGGAATTTGCCGACCTGGTGGAGTGGGGGCCNACGTTNAATTTGTTACCGACCGGGTTAACGGNTATGGNAACTGTGGNNTNGCAGTGGCGACCTGGAACNACCCTTATACCAGAGGGAGACCACCGNGGTGAGCCNGGTAATTACACCACGGNANGAGGATNNGTGGGACAAAGGNNTTTTATCCCAACTTATATANCACCCCCTAGNGCACANACATGTATGAGGTCCNACAACCTCGGTGCAAAAACAGGTTGTNAACNCTCGTGAAANAGTAGCCCTTTTGGGGGAAACCCCCTGCGTAACAACATACGNTTTACCCCCGGGACACAGAGCCCAACNNTGGAAAGGAATTTTTGTGGCGCCCCACACAAATANGCAANAGATACCACAATGCTGGCCCGGCACTNAGGGCCCGCCAAAC]
[+] EMBL AL692198 [AGAATTGCCNGAGGTTATGTGGAGCTGATACTGGCACAACANGTGTGCTTNGANNGCGTCACGGAGCGCATCAACGGCAATGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACTGCCGCGTGCTTGATACTTGCACTTGAAGCGCTATCCAGGTCGGGCTGCGCAGTGTGTTCAAAAAGCTTGAACAANGCTTGGTGTTCCTTCCCGGTATACGTAGCTNGGGACATTTTGCGGCCGTTCTTGACGGGGGTCGCAAAGGTGTTGAAAAGCTGTGGACCGTTCTGGCAACAATATCTGACCCCGGTGCAGAAAAATGGATTTCCTTTGGTACGGCTCGACCTTGTTACCGGGGCTTGGGTTGGGAAACAACATTCCGGGGCTCGGAATTTGCCGACCTGGTGGAGTGGGGGCCNACGTTNAATTTGTTACCGACCGGGTTAACGGNTATGGNAACTGTGGNNTNGCAGTGGCGACCTGGAACNACCCTTATACCAGAGGGAGACCACCGNGGTGAGCCNGGTAATTACACCACGGNANGAGGATNNGTGGGACAAAGGNNTTTTATCCCAACTTATATANCACCCCCTAGNGCACANACATGTATGAGGTCCNACAACCTCGGTGCAAAAACAGGTTGTNAACNCTCGTGAAANAGTAGCCCTTTTGGGGGAAACCCCCTGCGTAACAACATACGNTTTACCCCCGGGACACAGAGCCCAACNNTGGAAAGGAATTTTTGTGGCGCCCCACACAAATANGCAANAGATACCACAATGCTGGCCCGGCACTNAGGGCCCGCCAAAC]
consensusID : consensus_7282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence
[TACTACGGACCAAAAAAAAAAGAATAAAAATAAATTTCTTCTACACTGAGTAGAAGATCCTAGGGAGTAATAACATAGTAACGAGACTGGCGGTAAACATGCATCTGTGCGGGTAACGAAATGCAAGAAAGATCACGGATCGGATGGATGACGAGAGCAGTTAGAATATGCGCTCATAGAATAGCAGGTAGGCCTGGACCTTCAGTACGCTCTCCTCCGTGACCTCGCGCACGTAGCTGTCCGATACGCAGTACCATTTGCCGGGCGGCGTTTCCACCTCCTCCGCCGCGGGCCGGGCTTGTGGCTTGTGGGCGTACCCGACCGCACCTTCCAGCTCGTCCTGCGGCTGCCTGTCCCGCGGCTGGGACCGCTTGCGGCCGCACTCGTCGTTGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGT-------ACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGACACCAGCTTGTTCAGCTTTTTGAACACACTGCGCAGCCCGACCTGGAAGCGCTTCAAGTGCAG]
[-] EMBL BX614583 [TACTACGGACCAAAAAAAAAAGAATAAAAATAAATTTCTTCTACACTGAGTAGAAGATCCTAGGGAGTAATAACATAGTAACGAGACTGGCGGTAAACATGCATCTGTGCGGGTAACGAAATGCAAGAAAGATCACGGATCGGATGGATGACGAGAGCAGTTAGAATATGCGCTCATAGAATAGCAGGTAGGCCTGGACCTTCAGTACGCTCTCCTCCGTGACCTCGCGCACGTAGCTGTCCGATACGCAGTACCATTTGCCGGGCGGCGTTTCCACCTCCTCCGCCGCGGGCCGGGCTTGTGGCTTGTGGGCGTACCCGACCGCACCTTCCAGCTCGTCCTGCGGCTGCCTGTCCCGCGGCTGGGACCGCTTGCGGCCGCACTCGTCGTTGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCAT CGCATCGCCTGCTCTTTGGCCtc ]
[+] EMBL AGA283959 [ TGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGT ACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGACACCAGCTTGTTCAGCTTTTTGAACACACTGCGCAGCCCGACCTGGAAGCGCTTCAAGTGCAG]
[+] EMBL AGA281006 [ TGTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGT ACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGACACCAGCTTGTTCAGCTTTTTGAACACACTGC ]
[-] EMBL BM618504 [ GTCGCTGGGCGTGTGCGAGGAGCTGAACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCTTTGGCCATCTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATGAACTTCCACCGCGGATCGCCCGGGCCGAAGGTCGGCCGCACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGAGCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGATGTGCGACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGAAGGcgg ]
consensusID : consensus_7282#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[GAATTCCCCCGAGGTTTCGATGCACGGCGGCACTATGTCGCGTACGTGAAGGTGCGGCCGACCTTCGGCCCGGGCGATCCGCGGTGGAAGTTCATTCCGCAGGGCACGAAGGACGAGCTGGACCGCAAGTCCGAGCAGGAGATGGCCAAAGAGCAGGCGATGCGCATGGGGCTGCACGTGCGGGACAGTGATGATTCGTTCAGCTCCTCGCACACGCCCAGCGACAACGACGAGTGCGGCCGCAAGCGGTCCCAGCCGCGGGACAGGCAGCCGCAGGACGAGCTGGAAGGTGCGGTCGGGTACGCCCACAAGCCACAAGCCCGGCCCGCGGCGGAGGAGGTGGAAACGCCGCCGGCAAATGGTACTGCGTATCGGACAGCTACGTGCGCGAGGTCACGGAGGAGAGCGTACTGAAGGTCCAGGCCTACCTGCTATTCTATGAGCGCATATTCTAACTGCTCTCGTCATCCATCCGATCCGTGATCTTTCTTGCATTTCGTNACCCGCACAGATGCATGTTTACCGGCAGTCTCGTTACTATGTTATTACTCCCTAGGATCTTCTACTCAGTGTAGGAAGAAATTTATTTTTATTTCTTTTATATTAGGTCCGTCAGTACACCGACAGCAATCGTGAGCCGTTTACTCANTTTTGATGAGTGGTCAATAATTTATAATTTTTGCCATCTATTTTCATGTTACTAT]
[+] EMBL AL694678 [GAATTCCCCCGAGGTTTCGATGCACGGCGGCACTATGTCGCGTACGTGAAGGTGCGGCCGACCTTCGGCCCGGGCGATCCGCGGTGGAAGTTCATTCCGCAGGGCACGAAGGACGAGCTGGACCGCAAGTCCGAGCAGGAGATGGCCAAAGAGCAGGCGATGCGCATGGGGCTGCACGTGCGGGACAGTGATGATTCGTTCAGCTCCTCGCACACGCCCAGCGACAACGACGAGTGCGGCCGCAAGCGGTCCCAGCCGCGGGACAGGCAGCCGCAGGACGAGCTGGAAGGTGCGGTCGGGTACGCCCACAAGCCACAAGCCCGGCCCGCGGCGGAGGAGGTGGAAACGCCGCCGGCAAATGGTACTGCGTATCGGACAGCTACGTGCGCGAGGTCACGGAGGAGAGCGTACTGAAGGTCCAGGCCTACCTGCTATTCTATGAGCGCATATTCTAACTGCTCTCGTCATCCATCCGATCCGTGATCTTTCTTGCATTTCGTNACCCGCACAGATGCATGTTTACCGGCAGTCTCGTTACTATGTTATTACTCCCTAGGATCTTCTACTCAGTGTAGGAAGAAATTTATTTTTATTTCTTTTATATTAGGTCCGTCAGTACACCGACAGCAATCGTGAGCCGTTTACTCANTTTTGATGAGTGGTCAATAATTTATAATTTTTGCCATCTATTTTCATGTTACTAT]
consensusID : consensus_7282#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence
[GCAACAACAAGTGTGCTGCGAGGCGTGCACGGAGCGCATCAACGGCAAGGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACCGCCCGCCGTGCTTGATACTGCACTTGCAAGCGCTTCCAGGTCGCTGCTGCGCAGTGTGTTCAAAAAGCTGAACAAGCTGGTGTCCTTCCCGTATCGTGCTGGAGCATTGCGCCCGTTCTTGCGGGGTCNGTAAGGTGAAGCGGGCGTCCGCACATCCGCC]
[+] EMBL AL692255 [GCAACAACAAGTGTGCTGCGAGGCGTGCACGGAGCGCATCAACGGCAAGGGCGGCCCGTCGGTCAACACGAACGCGACCAAGCAGTTCCTCATCTCGCAACCGCCCGCCGTGCTTGATACTGCACTTGCAAGCGCTTCCAGGTCGCTGCTGCGCAGTGTGTTCAAAAAGCTGAACAAGCTGGTGTCCTTCCCGTATCGTGCTGGAGCATTGCGCCCGTTCTTGCGGGGTCNGTAAGGTGAAGCGGGCGTCCGCACATCCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7282#0 -------AGAATTGCCNGAGGTTATGTGGAGCTGATACTGGCACAACANGTGTGCTTNGA 53
consensus_7282#3 ---------------------------------------GCAACAACAAGTGTGCTGCGA 21
consensus_7282#1 TACTACGGACCAAAAAAAAAAGAATAAAAATAAATTTCTTCTACACTGAGTAGAAGATCC 60
consensus_7282#2 -----------------------------------GAATTCCCCCGAGGTTTCGATGCAC 25
* *
consensus_7282#0 NNGCGTCACGGAGCGCATCAACGGCAATGGCGGCC--CGTCGGTCAACACG---AACGCG 108
consensus_7282#3 GGCGTGCACGGAGCGCATCAACGGCAAGGGCGGCC--CGTCGGTCAACACG---AACGCG 76
consensus_7282#1 TAGGGAGTAATAACATAGTAACGAGACTGGCGGTAAACATGCATCTGTGCGGGTAACGAA 120
consensus_7282#2 GGCGGCACTATGTCGCGTACGTGAAGGTGCGGCCGACCTTCGGCCCGGGCGA--TCCGCG 83
* * * * * * * ** **
consensus_7282#0 AC-CAAGCAGTTCCTCATCTCGCA--ACTGCCG--CGTGCTTGATACTTGCACTTG-A-A 161
consensus_7282#3 AC-CAAGCAGTTCCTCATCTCGCA--ACCGCCCGCCGTGCTTGATACT-GCACTTGCA-A 131
consensus_7282#1 ATGCAAGAAAGATCACGGATCGGATGGATGACGAGAGCAGTTAGAATATGCGCTCATAGA 180
consensus_7282#2 GTGGAAGTTCATTC-CGCAGGGCACGAAGGACGAGCTGGACCGCAAGT-CCGAGCAGGAG 141
*** * * * * * * * *
consensus_7282#0 GCGCTATCCAGGTCGG-GCT----GCGCAGTGTGTTCAAAAAGCTTGAACAANGCTTGGT 216
consensus_7282#3 GCGCT-TCCAGGTCGCTGCT----GCGCAGTGTGTTCAAAAAGCT-GAACAAG--CTGGT 183
consensus_7282#1 ATAGCAGGTAGGCCTGGACCTTCAGTACGCTCTCCTCCGTGACCTCGCGCACG--TAGCT 238
consensus_7282#2 ATGGCCAAAGAGCAGGCGAT----GCGCATGGGGCTGCACGTGCGGGACAGTGATGATTC 197
* * * * * *
consensus_7282#0 GTTCC-TTCCCGGTATACGTAGCTNGGGACATTTTGCGGCCGTTCTTGACGGGGGTCGCA 275
consensus_7282#3 GTCCT-TCCC--GTAT-CGTG--CTGGAGCATT--GCGCCCGTTCTTGC--GGGGTCNGT 233
consensus_7282#1 GTCCGATACGCAGTAC-CATTTGCCGGGCGGCGTTTCCACCTCCTCCGCCGCGGGCCGGG 297
consensus_7282#2 GTTCAGCTCCTCGCACACGC---CCAGCGACAACGACGAGTGCGGCCGCAAGCGGTCCCA 254
** * * * * * * * * ** *
consensus_7282#0 AAGGTGTTGAAAAGCTGTGGACCGTTCTGGCAACAATATCTGACCCCGG-TGCAGAAAAA 334
consensus_7282#3 AAGGTG--AAGCGGGCGTCCGCACATCCGCC----------------------------- 262
consensus_7282#1 CTTGTGGCTTGTGGGCGTACCCGACCGCACCTTCCAGCTCGTCCTGCGGCTGCCTGTCCC 357
consensus_7282#2 GCCGCG--GGACAGGCAGCCGCAGGACGAGCTGGAAGGTGCGGTCGGGTACGCCCA-CAA 311
* * * * *
consensus_7282#0 TGGATTTCCTTTGGTACGGCTCGACCTTGTTACCGGGGCTTGGGTTGGGAAACAACATTC 394
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 GCGGCTGGGACCGCTTGCGGCCGCACTCGTCGTTGTCGCTGGGCGTGTGCGAGGAGCTGA 417
consensus_7282#2 GCCACAAGCCCGGCCCGCGGCGGAGGAGGTGGAAACGCCGCCGGCAAATGGTACTGCGTA 371
consensus_7282#0 CGGGGCTCGGAATTTGCCGACCTGGTGGAGTGGGGGCCNACGTTNAATTT--GTTACCGA 452
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 ACGAATCATCACTGTCCCGCACGTGCAGCCCCATGCGCATCGCCTGCTCT--TTGGCCAT 475
consensus_7282#2 TCGGACAGCTACGTGCGCGAGGTCACGGAGGAGAGCGTACTGAAGGTCCAGGCCTACCTG 431
consensus_7282#0 CCGGGTTAACGGNTATGGNAACTGTGGNNTNGCAGTGGCGACCTGGAAC-NACCCTTATA 511
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 CTCCTGCTCGGACTTGCGGTCCAGCTCGTCCTTCGTGCCCTGCGGAATG-AACTTCCACC 534
consensus_7282#2 CTATTCTATGAGCGCATATTCTAACTGCTCTCGTCATCCATCCGATCCGTGATCTTTCTT 491
consensus_7282#0 CCAGAGGGAGACCACCGNGGTGAGCCNGGTAATTACACCACGGNANGAGG-ATNNGTGGG 570
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 GCGGATCGCCCGGGCCGAAGGTACCTTCACGTACGCGACATAGTGGCCGCCGTGCATCGA 594
consensus_7282#2 GCATTTCGTNACCCGCACAGATGCATGTTTACCGGCAGTCTCGTTACTATGTTATTACTC 551
consensus_7282#0 ACAAAGGNNTTTTATCCCAACTTATATANCACCCCCTAGNGCACANACATGTATGAGGTC 630
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 GCCGGAGTGTTCCACCAGCCCGTACAGCGCGTACAGGATCTTTTTCTGCCCGGGGCGGAT 654
consensus_7282#2 CCTAGGATCTTCTACTCAGTGTAGGAAGAAATTTATTTTTATTTCTTTTATATTAGGTCC 611
consensus_7282#0 CNACA-ACCTCGGTGCAAAAACAGGTTGTNAACNCTCGTGAAANAGTAGCCCTTTTGGGG 689
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 GTGCG-ACGCCCGCTTCACCTTCGACCCGCAGAACGGCGCAATGTCCAGCACGAACGGGA 713
consensus_7282#2 GTCAGTACACCGACAGCAATCGTGAGCCGTTTACTCANTTTTGATGAGTGGTCAATAATT 671
consensus_7282#0 GAAACCCCCTGCGTAACAACATACGNTTTACCCCCGGGACACAGAGCCCAACNNTGGAAA 749
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 AGGACACCAGCTTGTTCAGCTTTTTGAACACACTGCGCAGCCCGACCTGGAAGCGCTTCA 773
consensus_7282#2 TATAATTTTTGCCATCTATTTTCATGTTACTAT--------------------------- 704
consensus_7282#0 GGAATTTTTGTGGCGCCCCACACAAATANGCAANAGATACCACAATGCTGGCCCGGCACT 809
consensus_7282#3 ------------------------------------------------------------
consensus_7282#1 AGTGCAG----------------------------------------------------- 780
consensus_7282#2 ------------------------------------------------------------
consensus_7282#0 NAGGGCCCGCCAAAC 824
consensus_7282#3 ---------------
consensus_7282#1 ---------------
consensus_7282#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||