These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 622 fasta sequence [TTTTTTTTAGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA-CACCTAATTG-CACACGCAAAATG-CACACCGCATC-AG-CCCGGC-GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA-GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCCAACAGTTCTCGAGGAATTCCGC] [+] EMBL AGA283723 [TTTTTTTTAGNTCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACACCGCATC AG CCCGGC GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGT ] [-] EMBL BM575982 [ AGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTT ACCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACGTCGCTTC AG CCCGAC G GCGGCTCTTTTTTAACCAATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGATTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACcgg ] [-] EMBL BM610310 [ AGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTT ACCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACGTCGCTTC AG CCCGAC G GCGGCTCTTTTTTAACCAATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGATTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCcgg ] [+] EMBL CNS08W40 [ tTCTCTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA CACCTAATTG CACACGCAAAATG CGCACCGCATC AG CCCGGC GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGGGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGGGGAGGCACAAACCCAGCACGAAGCAGCCCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATTTTCCAACGAGGCAGCAGTTAACAAACTGCGTTATGCCGGTCAGCAGAATGTACAGCAAGTTGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTTCTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGGTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAG GAGCAATTAGCACGTAAAAAGGAATGTTTTAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCCAACAGTTCTCGAGGAATTCCGC] [-] EMBL BM578301 [ ATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACACCGCATC AG CCCGGC GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGcgg ] [-] EMBL BM576815 [ TATTCGTGTAATTGTTTAATCCCACCTTACAACCACCTAATTGCCACACGCAAAATGCCACACCGCATCAAGCCCCGGCGGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGATCTTTCCGcgg ] consensusID : consensus_7298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [TGTAATTGTTTAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGCCCACGCGTCCGCCCACGCGTCCGCGG] [-] EMBL BM614596 [TGTAATTGTTTAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGCCCACGCGTCCGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7298#0 TTTTTTTTAGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTT 60 consensus_7298#1 --------------------------------------------------TGTAATTGTT 10 ********** consensus_7298#0 TAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGG 120 consensus_7298#1 TAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGG 70 ************************************************************ consensus_7298#0 CTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAA 180 consensus_7298#1 CTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAA 130 ************************************************************ consensus_7298#0 ACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGG 240 consensus_7298#1 ACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGG 190 ************************************************************ consensus_7298#0 GGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACC 300 consensus_7298#1 GGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACC 250 ************************************************************ consensus_7298#0 CGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGA 360 consensus_7298#1 CGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGA 310 ************************************************************ consensus_7298#0 TGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTT 420 consensus_7298#1 TGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTT 370 ************************************************************ consensus_7298#0 TGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGA 480 consensus_7298#1 TGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGA 430 ************************************************************ consensus_7298#0 GCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAAT 540 consensus_7298#1 GCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAAT 490 ************************************************************ consensus_7298#0 GTGTGAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCC 600 consensus_7298#1 GTGTGAGGCCGTGCGTAG-CCCACGCGTCCGCCCACGCGTCCGCGG-------------- 535 ****************** * ** * * * * consensus_7298#0 AACAGTTCTCGAGGAATTCCGC 622 consensus_7298#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||