cluster # 7298

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Anopheles gambiae
cluster # 7298 cluster # 7298 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7298#0 length = 622 sequences # 6

consensus_7298#1 length = 535 sequences # 1

consensusID : consensus_7298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 622
fasta sequence

                              [TTTTTTTTAGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA-CACCTAATTG-CACACGCAAAATG-CACACCGCATC-AG-CCCGGC-GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA-GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCCAACAGTTCTCGAGGAATTCCGC]

[+] EMBL AGA283723            [TTTTTTTTAGNTCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACACCGCATC AG CCCGGC GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGT                                                                                                                                                                                                            ]
[-] EMBL BM575982             [        AGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTT ACCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACGTCGCTTC AG CCCGAC G   GCGGCTCTTTTTTAACCAATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGATTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACcgg                                                                                           ]
[-] EMBL BM610310             [        AGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTT ACCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACGTCGCTTC AG CCCGAC G   GCGGCTCTTTTTTAACCAATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGATTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCcgg                                                                                             ]
[+] EMBL CNS08W40             [          tTCTCTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA CACCTAATTG CACACGCAAAATG CGCACCGCATC AG CCCGGC GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGGGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGGGGAGGCACAAACCCAGCACGAAGCAGCCCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATTTTCCAACGAGGCAGCAGTTAACAAACTGCGTTATGCCGGTCAGCAGAATGTACAGCAAGTTGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTTCTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGGTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAG GAGCAATTAGCACGTAAAAAGGAATGTTTTAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCCAACAGTTCTCGAGGAATTCCGC]
[-] EMBL BM578301             [                               ATTTACCAATTCTTATTCGTGTAATTGTTTAATCCCACCTTACAA CACCTAATTG CACACGCAAAATG CACACCGCATC AG CCCGGC GGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCA GGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGcgg                                                                        ]
[-] EMBL BM576815             [                                            TATTCGTGTAATTGTTTAATCCCACCTTACAACCACCTAATTGCCACACGCAAAATGCCACACCGCATCAAGCCCCGGCGGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGATCTTTCCGcgg                                                    ]




>consensus_7298#0
TTTTTTTTAGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTT
TAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGG
CTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAA
ACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGG
GGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACC
CGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGA
TGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTT
TGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGA
GCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAAT
GTGTGAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCC
AACAGTTCTCGAGGAATTCCGC

consensusID : consensus_7298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [TGTAATTGTTTAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGCCCACGCGTCCGCCCACGCGTCCGCGG]

[-] EMBL BM614596             [TGTAATTGTTTAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAATGTGTGAGGCCGTGCGTAGCCCACGCGTCCGCCCACGCGTCCGCGG]




>consensus_7298#1
TGTAATTGTTTAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATC
AGCCCGGCGGCTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATT
ATGTGCGCAAACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCC
TTGTTCTGGGGGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTG
CTGATGAACCCGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACA
AACTGCGTGATGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTC
TTGGGCGTTTTGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTC
ATGGTGGAGAGCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGT
AAAAAGGAATGTGTGAGGCCGTGCGTAGCCCACGCGTCCGCCCACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7298#0      TTTTTTTTAGATCACTCACACTCTTTCATGTATTTACCAATTCTTATTCGTGTAATTGTT 60
consensus_7298#1      --------------------------------------------------TGTAATTGTT 10
                                                                        **********

consensus_7298#0      TAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGG 120
consensus_7298#1      TAATCCCACCTTACAACACCTAATTGCACACGCAAAATGCACACCGCATCAGCCCGGCGG 70
                      ************************************************************

consensus_7298#0      CTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAA 180
consensus_7298#1      CTGCGGTTCTTTTTTAACCGATGAAGTTGACCACGACCAGGTGCAAAATTATGTGCGCAA 130
                      ************************************************************

consensus_7298#0      ACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGG 240
consensus_7298#1      ACACAAAGTCGGCAAAGCCACGCTCGGGCGAGATTCCCAAAAACTGTTCCTTGTTCTGGG 190
                      ************************************************************

consensus_7298#0      GGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACC 300
consensus_7298#1      GGTTCGACTGCAGGCGGAGGCACACACCCAGCACGAAGCAGCTCACCGTGCTGATGAACC 250
                      ************************************************************

consensus_7298#0      CGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGA 360
consensus_7298#1      CGGCCAGGAACGAGTTGAACGGGAATGTTCCAACGAGGCAGCAGTAAACAAACTGCGTGA 310
                      ************************************************************

consensus_7298#0      TGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTT 420
consensus_7298#1      TGCCGGTCAGCAGAATGTACAGCAAGTAGGCGTCGACGATCTTCAGCTTCTTGGGCGTTT 370
                      ************************************************************

consensus_7298#0      TGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGA 480
consensus_7298#1      TGTGCGCGTACTCGTCGTAGAACTTGTACAGCACTTCCGTGAGGTTCTTCATGGTGGAGA 430
                      ************************************************************

consensus_7298#0      GCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAAT 540
consensus_7298#1      GCGTTGGCTTTGGCCGCTGGACACGGATGCGGAGCGAGCAATTAGCACGTAAAAAGGAAT 490
                      ************************************************************

consensus_7298#0      GTGTGAGGCCGTGCGTAGATCTTTCCGATTGGAATTGAGATTTTTGTGTTCCAGTTGGCC 600
consensus_7298#1      GTGTGAGGCCGTGCGTAG-CCCACGCGTCCGCCCACGCGTCCGCGG-------------- 535
                      ******************  *    **   *     * *      *              

consensus_7298#0      AACAGTTCTCGAGGAATTCCGC 622
consensus_7298#1      ----------------------