cluster # 7299

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Anopheles gambiae
cluster # 7299 cluster # 7299 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7299#0 length = 828 sequences # 6

consensus_7299#1 length = 712 sequences # 1

consensusID : consensus_7299#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 828
fasta sequence

                              [TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCTACGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG]

[+] EMBL BX603520             [TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX604071             [       CAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACTCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCG                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM622920             [      ccgGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATC                                                                                                                                                                                                     ]
[+] EMBL BX624464             [                      CGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCTACGTGAAGAACGTGGGCG                               ]
[+] EMBL BX602175             [                              TTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCA                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX609084             [                                                                                      GCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAAGGAGAGCTACGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG]




>consensus_7299#0
TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAG
ATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAAC
AGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGT
GTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACT
GCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGC
GGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTT
CGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGT
CCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAA
ACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATA
CGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGAC
GCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGA
GTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCG
CGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCTA
CGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG

consensusID : consensus_7299#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGA]

[+] EMBL BX467834             [AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGA]




>consensus_7299#1
AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCG
GACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCG
AGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTT
CACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCA
CGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGC
GACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGA
TTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGA
TCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAA
TGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGG
CATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGT
GGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGAT
GACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7299#0      TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAG 60
consensus_7299#1      ---------------AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAG 45
                                        *  ***  *   * ****************************

consensus_7299#0      ATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAAC 120
consensus_7299#1      ATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAAC 105
                      ************************************************************

consensus_7299#0      AGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGT 180
consensus_7299#1      AGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGT 165
                      ************************************************************

consensus_7299#0      GTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACT 240
consensus_7299#1      GTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACT 225
                      ************************************************************

consensus_7299#0      GCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGC 300
consensus_7299#1      GCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGC 285
                      ************************************************************

consensus_7299#0      GGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTT 360
consensus_7299#1      GGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTT 345
                      ************************************************************

consensus_7299#0      CGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGT 420
consensus_7299#1      CGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGT 405
                      ************************************************************

consensus_7299#0      CCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAA 480
consensus_7299#1      CCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAA 465
                      ************************************************************

consensus_7299#0      ACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATA 540
consensus_7299#1      ACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATA 525
                      ************************************************************

consensus_7299#0      CGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGAC 600
consensus_7299#1      CGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGAC 585
                      ************************************************************

consensus_7299#0      GCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGA 660
consensus_7299#1      GCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGA 645
                      ************************************************************

consensus_7299#0      GTTTTTCCGCCTGATGACGCGCAACTT-CTCCGACGACGAGTGGCGCTACATACGCGGCC 719
consensus_7299#1      GTTTTTCCGCCTGATGACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCC 705
                      *************************** ********************************

consensus_7299#0      GCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCT 779
consensus_7299#1      GCGATGA----------------------------------------------------- 712
                      *******                                                     

consensus_7299#0      ACGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG 828
consensus_7299#1      -------------------------------------------------