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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 917 fasta sequence
[ATCCCCCNAGGTTNGTGCAGC-ATTGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAG-AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGCATCGTCGATTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGA-TTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAGGCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAGTGGGCCCACGACATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTGTACATTTACTTTAACACCAGCAATGCGTTTGTGAAGGAGAAAATTTCGCTGTAAAATGGGAAAGGATGAACAAAGAAATCAAA]
[+] EMBL AL934526 [ATCCCCCNAGGTTNGTGCAGC ATTGTGCATTTATGTAAGTAAGTCTGCCGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGNAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGCATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCA ]
[+] EMBL CNS09HCF [ GTTTGTGCAGCAATTGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAG AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCG ATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGA TTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAGGCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAGTGGGCCCACGACATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTGTACATTTACTTTAACACCAGCAATGCGTTTGTGAAGGAGAAAAT ]
[+] EMBL BM640644 [ ccgGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCTAACTTGGTTTGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTTGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAG AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAATCCAAACAGTCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTGAAAAAGCTGCAGAGCCAAGAGTGGACCCCGCATCGTCGATTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTAAGCCGTTACTTCTCGTCCTACAATACGGCCGCCCTGCACGGGTTCGTGTTTGCGGTGGACACGA ]
[-] EMBL CNS09HCG [ ATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAG AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCG ATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGA TTCCCTT TGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAGGCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAGTGGGCCCACGACATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTGTACATTTACTTCAACACCAGCAATGCGTTTGTGAAGGAGAAAATTTCGCTGTAAAATGGGAAAGGATGAACAAAGAAATCAAA]
consensusID : consensus_7306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence
[GGCCAAGAATCGGCACGNGGTGGATAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAAGTTTAAGCCGTTACTTCTCCATCCTACAATACGGTCGCCCTGCACGGCTTAGTG-TTGCGGTGGACACGATCAAATCCATCATCCTGAGCGATGGCCTTGTTGGCCCTCGAATTTCACCGGGTTACCACATTCTTCGGAATTCGGAGAAACAGGGGCTTGGTTAACCAAAGGCTTTCCAGGCCCCNGGAGGCTTTTTGAAACANGAAACCAAACTTTTCCCAGAAGANAAAGGGGGAGCACAAACTTGGGAGCGNACAAAGGGTANACACAAGTGTTGGGCCGCCACAGTGACNAGATGTCCACACAGCGAGACAT]
[+] EMBL BX467212 [GGCCAAGAATCGGCACGNGGTGGATAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAAGTTTAAGCCGTTACTTCTCCATCCTACAATACGGTCGCCCTGCACGGCTTAGTG TTGCGGTGGACACGATCAAATCCATCATCCTGAGCGATGGCCTTGTTGGCCCTCGAATTTCACCGGGTTACCACATTCTTCGGAATTCGGAGAAACAGGGGCTTGGTTAACCAAAGGCTTTCCAGGCCCCNGGAGGCTTTTTGAAACANGAAACCAAACTTTTCCCAGAAGANAAAGGGGGAGCACAAACTTGGGAGCGNACAAAGGGTANACACAAGTGTTGGGCCGCCACAGTGACNAGATGTCCACACAGCGAGACAT]
[+] EMBL BX608006 [ AGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAA TTTAAGCCGTTACTTCTCC TCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGG ]
consensusID : consensus_7306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CCGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAGAAGGATGTGATTGACCGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCC]
[+] EMBL BM585415 [CCGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAGAAGGATGTGATTGACCGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7306#0 ATCCCCCNAGGTTNGTGCAGCATTGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGAT 60
consensus_7306#2 ------------------------------------------------------------
consensus_7306#1 ----------------------------------GGCCAAGAATCGGCACGN-GGTGGAT 25
consensus_7306#0 AAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGC 120
consensus_7306#2 CCGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGC 60
consensus_7306#1 A-GTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGC 84
*********************************************** **********
consensus_7306#0 CAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCG 180
consensus_7306#2 CGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCG 120
consensus_7306#1 CAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCG 144
* ******************** *************************************
consensus_7306#0 GCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACAC 240
consensus_7306#2 GCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACAC 180
consensus_7306#1 GCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACAC 204
******* ******************** *******************************
consensus_7306#0 CGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAAT 300
consensus_7306#2 CGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAAT 240
consensus_7306#1 CGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAAT 264
************************************************************
consensus_7306#0 GGGACGCCCAGAAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCA 360
consensus_7306#2 GGGACGCTCAGAAGGATGTGATTGACC----------------GACCGCTTTGAGCAGCA 284
consensus_7306#1 GGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCA 324
******* ******************* ********* *******
consensus_7306#0 CAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACT 420
consensus_7306#2 CAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACT 344
consensus_7306#1 CAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACT 384
******* ****************************************************
consensus_7306#0 ACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGC 480
consensus_7306#2 ACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGC 404
consensus_7306#1 ACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGC 444
************************************************************
consensus_7306#0 AGAGCCAAGAGTGGACCCCGCATCGTCGATTGGTGCAACAAGCGGTACGAGATCAACCTC 540
consensus_7306#2 AGAGCCAAGAGTGGACCCCG-ATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTC 463
consensus_7306#1 AGAGCCAAGAGTGGACCCCG-ATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTC 503
******************** ******** ************** ***************
consensus_7306#0 GCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAA-TTTGAG 599
consensus_7306#2 GCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAA-TTTGAG 522
consensus_7306#1 GCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAAGTTTAAG 563
***************** *********************************** *** **
consensus_7306#0 CCGTTACTTCTCC-TCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACA 658
consensus_7306#2 CCGTTACTTCTCC-TCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACA 581
consensus_7306#1 CCGTTACTTCTCCATCCTACAATACGGTCGCCCTGCACGGCTTAGTGTT-GCGGTGGACA 622
************* ************* *************** ***** **********
consensus_7306#0 CGATCAAATCCATCATCTTGA-CGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAG 717
consensus_7306#2 CGATCAAATCCATCATCTTGA-CGATGGCC------------------------------ 610
consensus_7306#1 CGATCAAATCCATCATCCTGAGCGATGGCCT-TGTTGGCCCTCGAATTTCACC----GGG 677
***************** *** ********
consensus_7306#0 GCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAG 777
consensus_7306#2 ------------------------------------------------------------
consensus_7306#1 TTACCACATTCTTCGGAATTCGGAGAAA-----CAGGGGCTTGGTTAACCAAAGGCTTTC 732
consensus_7306#0 TGGGCCCACGA---CATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTG 834
consensus_7306#2 ------------------------------------------------------------
consensus_7306#1 CAGGCCCCNGGAGGCTTTTTGAAACANGAAACCAAACTTTTCCCAGAAGANAAAG-GGGG 791
consensus_7306#0 TACATTTACTTTAACACCAGCAATGCGTTTGTGAAGGAGAAAATTTCGCTGTAAAATGGG 894
consensus_7306#2 ------------------------------------------------------------
consensus_7306#1 AGCACAAACTTGGGAGCGNACAAAGGGTANACACAAGTGTTGGGC-CGCCACAGTGACNA 850
consensus_7306#0 AAAGGATGAACAAAGAAATCAAA 917
consensus_7306#2 -----------------------
consensus_7306#1 GATGTCCACACAGCGAGACAT-- 871
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||