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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence
[CCGCCCACGCGTCCGAACATTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGC-TGATCCAGCGGTTGGCCGACTCGTA-CCCGCTGCGCAGGG-CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT-CG-CCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAAGATAAAGG--GTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATTTGTCGAAAAAAAA]
[+] EMBL BM601761 [CCGCCCACGCGTCCGAACATTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGCTTGATCCAGCGGTTGGCCGACTCGTACCCCGCTGCGCAGGGCCCGCCCAGATGGTGCTGAGCGGTTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGTCCGCCCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAag ]
[+] EMBL BX612780 [ CCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGC TGATCCAGCGGTTGGCCGACTCGTA CCCGCTGCGCAGGG CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT CG CCGGAGCGGTTGC GCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAAGATAAAGG GTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTT ]
[+] EMBL AGA285681 [ AAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCA ]
[+] EMBL BM601260 [ ccgGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTCCAGTTCTAGAAGCCCGAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGCTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGC TGATCCAGCGGTTGGCCGACTCGTA CCCGCTGCGCAGGG CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT CG CCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGAGCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAAGATAAAGGGTGTGGGTGTGTAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATTTGTCG ]
[-] EMBL AGA284375 [ CTGATTCTGCGATACCTGCCCAACAACGAGCAGC TGATCCAGCGGTTGCCCGACTCGTA CCCGCTGCGCAGGG CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT CG CCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATANTAGAGACAAGCGAAGATAAAGG GTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATTTGTCGAAAAAAAA]
consensusID : consensus_7307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[GGTTAATAAAAGTCAAACATTTCTGTGGGCAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAACAAGGAAAGTGCCTGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCTGCCGCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTTGCGATACCTGGGCAACAACGAGCAGTGATCCAGCGGTTGGCGACTCGTACCCGCTGCGCAGGGGCCGCCAGATTGGTGCTTGAGCGCGTACTAATCGCAAGTCGGTCCATTGGCTGGANGCCAGGCAGGAAAGCCTGAATCCGGGCACATTGTTCCGCCCCGGCAAGACAGNGGTTTGCCAAGCAAGGGCGGTTTNNCAGCCACCTTTCCAAGTTTCGAAACGGTTGCAGCANGGAGAATCGCACAAATGTCCGNGACGAAATTGACTTTGGGGGCANAACGAAACAAGTGAAAGGTTGAA]
[+] EMBL AL693759 [GGTTAATAAAAGTCAAACATTTCTGTGGGCAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAACAAGGAAAGTGCCTGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCTGCCGCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTTGCGATACCTGGGCAACAACGAGCAGTGATCCAGCGGTTGGCGACTCGTACCCGCTGCGCAGGGGCCGCCAGATTGGTGCTTGAGCGCGTACTAATCGCAAGTCGGTCCATTGGCTGGANGCCAGGCAGGAAAGCCTGAATCCGGGCACATTGTTCCGCCCCGGCAAGACAGNGGTTTGCCAAGCAAGGGCGGTTTNNCAGCCACCTTTCCAAGTTTCGAAACGGTTGCAGCANGGAGAATCGCACAAATGTCCGNGACGAAATTGACTTTGGGGGCANAACGAAACAAGTGAAAGGTTGAA]
consensusID : consensus_7307#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[ATTCTCGAAGCAGAATCGGCACGAGGGTGGCCGCAACATGCCTGTTTTTTTNCTTGTTTTTTTTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAANCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGGCAGCCCGATCGAACCATCCGCAAGCTGCACGGGATCGAGTACACGCAAGGAAGAGCAGCTGNCGACGGCNTCGAAAGTTTGCGCAAACAGNTCGCCCTGAAGGCAGGCAGCTGATCAAGAAGTACAAGANACGTTCAGTTCTAGGAAGCCCAANACCCGTCGCGCCCGAAGCCGGNTACTCGGCGAGTGGTGTTGGACANGCTGATTCTGCGATTACCTG]
[+] EMBL BX469337 [ATTCTCGAAGCAGAATCGGCACGAGGGTGGCCGCAACATGCCTGTTTTTTTNCTTGTTTTTTTTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAANCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGGCAGCCCGATCGAACCATCCGCAAGCTGCACGGGATCGAGTACACGCAAGGAAGAGCAGCTGNCGACGGCNTCGAAAGTTTGCGCAAACAGNTCGCCCTGAAGGCAGGCAGCTGATCAAGAAGTACAAGANACGTTCAGTTCTAGGAAGCCCAANACCCGTCGCGCCCGAAGCCGGNTACTCGGCGAGTGGTGTTGGACANGCTGATTCTGCGATTACCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7307#0 -----------------------------------------CCGCCCACGCGT-CCGAAC 18
consensus_7307#2 ATTCTCGAAGCAGAATCGGCACGAGGGTGGCCGCAACATGCCTGTTTTTTTNC-TTGTTT 59
consensus_7307#1 ------------------------------------------GGTTAATAAAAGTCAAAC 18
*
consensus_7307#0 ATTT--CGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAAC 76
consensus_7307#2 TTTTTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAAC 119
consensus_7307#1 ATTTC-TGTGGGCAA-CAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAAC 76
*** ******** ********************************************
consensus_7307#0 ATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATT 136
consensus_7307#2 ATTCCAGAAANCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATT 179
consensus_7307#1 ATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATT 136
********** *************************************************
consensus_7307#0 ATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAA-AAGGAAAGTGCC-G 194
consensus_7307#2 ATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAA-AAGGAAAGTGCC-G 237
consensus_7307#1 ATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAACAAGGAAAGTGCCTG 196
********************************************* ************ *
consensus_7307#0 AGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAG-CAGCCCGATC-AACCAT 252
consensus_7307#2 AGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGGCAGCCCGATCGAACCAT 297
consensus_7307#1 AGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAG-CAGCCCGATC-AACCAT 254
****************************************** ********** ******
consensus_7307#0 CCGCAAGCTGCACGGGATCGAGTACA-GCAAGGAAGAGCAGCTGC-GACGGCT-CGAAAG 309
consensus_7307#2 CCGCAAGCTGCACGGGATCGAGTACACGCAAGGAAGAGCAGCTGNCGACGGCNTCGAAAG 357
consensus_7307#1 CCGCAAGCTGCACGGGATCGAGTACA-GCAAGGAAGAGCAGCTGC-GACGGCT-CGAAAG 311
************************** ***************** ****** ******
consensus_7307#0 TTTGCGCAAACAGCTCGCCCTGAAGC--AGCAGCTGATCAAGAAGTACAAGAA-CGTTCA 366
consensus_7307#2 TTTGCGCAAACAGNTCGCCCTGAAGGCAGGCAGCTGATCAAGAAGTACAAGANACGTTCA 417
consensus_7307#1 TTTGCGCAAACAGCTCGCCCTGAAGC-AGGCAGCTGATCAAGAAGTACAAGAA-CGTTCA 369
************* *********** *********************** ******
consensus_7307#0 GTTCTAG-AAGCCCAAA-CCCGCCGC-CCCGAA-CCGCTCTCGCGA----TGGTGTTGCA 418
consensus_7307#2 GTTCTAGGAAGCCCAANACCCGTCGCGCCCGAAGCCGGNTACTCGGCGAGTGGTGTTGGA 477
consensus_7307#1 GTTCTAG-AAGCCCAAACCCTGCCGC--CCGAA-CCGCTCTCGCGA----TGGTGTTGCA 421
******* ******** ** * *** ***** *** * ** ******** *
consensus_7307#0 ---ACTGATTCT-GCGAT-ACCTGGCCAACAACGAGCAGCTGATCCAGCGGTTGGCCGAC 473
consensus_7307#2 CANGCTGATTCT-GCGATTACCTG------------------------------------ 500
consensus_7307#1 ---ACTGATTCTTGCGAT-ACCTGGGCAACAACGAGCAG-TGATCCAGCGGTTGGC-GAC 475
******** ***** *****
consensus_7307#0 TCGTACCCGCTGCGCAGGGCCGCCCAGAT-GGTGCT-GAGCGCGTACTA-TCGCA-GTCG 529
consensus_7307#2 ------------------------------------------------------------
consensus_7307#1 TCGTACCCGCTGCGCAGGGGCCGCCAGATTGGTGCTTGAGCGCGTACTAATCGCAAGTCG 535
consensus_7307#0 CTCCATTGCCGAGCAGCAG---AAGCTGATCGGAATGTCGCCGGAGCGGTTGCAGCAGGC 586
consensus_7307#2 ------------------------------------------------------------
consensus_7307#1 GTCCATTGGCTGGANGCCAGGCAGGAAAGCCTGAATCCGGGCACATTGTTCCGCCCCGGC 595
consensus_7307#0 GTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGG 646
consensus_7307#2 ------------------------------------------------------------
consensus_7307#1 AAGACAGNGGTTTGCCAAGCAAGGGCGGTTTNNCAGCCACCTTTCCAAGTTTCGAAACGG 655
consensus_7307#0 CAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAA 706
consensus_7307#2 ------------------------------------------------------------
consensus_7307#1 TTGCAGCANGGAGAATCGCACAAATGTCCGNGACGAAATTGACTTTGGGGGCANAACGAA 715
consensus_7307#0 GATAAAGGGTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATT 766
consensus_7307#2 ------------------------------------------------------------
consensus_7307#1 ACAAGTGAAAGGTTGAA------------------------------------------- 732
consensus_7307#0 TGTCGAAAAAAAA 779
consensus_7307#2 -------------
consensus_7307#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||