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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1283 fasta sequence
[CCGCTGCTGCAGAACATTCTGCTGAAGAGTTTGCTGAAAGTGGGCACCCAATACCGAACCGTTTCGTTCGAGAAAGCATTCCCCGTGTCGTTCCTGCAGCCGCTGCTCAAGATGGCACGGGCCGCCTCCATCCCGATCCGCATCATCGTGATGCAGATCTTTCAGCAGCTGCTCGATCGGCACCAGAACCAGCACCTGCTGAACGTGATCAACGTGAGCCACTATCCGACGCTGACGATCGAAACGCCGTCCCGGTCGGACATACTGTTCACGCACAAGTACGGCTCGAACATACTGCAGGCCATCATCGAGAGCATGTCGCAGGAGAACCATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTCTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTACGCCGGACCGAACCCCAGCACGACGTCATCCAGAACAAGCTGAATGAAATCTTTAACGCCCTGTCGGCGGAGCGACAGATTTCGGCTTCCTGCGGTGTACAGGCCGGTTCGCTGCTGCTAGCCGCCAACGGGGGACTCAACGGGCCGTCGATGATTGAGCCGGGCAAGCATCACCTGGCGGCCGGTGGCCAGCGACCAATCTACGAGAATAACTTTCCGGAATTGTTCTTCTATTAGATGGTGGTAGTTTAATAGAGAAG]
[+] EMBL BM646823 [CCGCTGCTGCAGAACATTCTGCTGAAGAGTTTGCTGAAAGTGGGCACCCAATACCGAACCGTTTCGTTCGAGAAAGCATTCCCCGTGTCGTTCCTGCAGCCGCTGCTCAAGATGGCACGGGCCGCCTCCATCCCGATCCGCATCATCGTGATGCAGATCTTTCAGCAGCTGCTCGATCGGCACCAGAACCAGCACCTGCTGAACGTGATCAACGTGAGCCACTATCCGACGCTGACGATCGAAACGCCGTCCCGGTCGGACATACTGTTCACGCACAAGTACGGCTCGAACATACTGCAGGCCATCATCGAGAGCATGTCGCAGGAGAACCATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTGTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCC ]
[+] EMBL BX628584 [ TCGTCGAGATGGCGTGCGGCGAAACGATGCAAGAGTTTCTGCTCTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAAAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGA ]
[+] EMBL BX613722 [ TTCTGCTCTTCATATTGGGCGTACAGCAAGTGGCCGTAACCTAGGTGGAACTATCGCCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTGATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAATCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCCCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGAAACAGTGTGGTCGATGCGAGCTACAACTACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGCGTGCTAGCCGAACCGACGGAAGCTTCGAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACGGCATTCGAGGATTTGGTACGCCGGACCGAACCCCAG ]
[+] EMBL BX620508 [ GGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTA ]
[+] EMBL BM614762 [ ccgCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTACGCCGGACCGAACCCAAGCACGACGTCATCCAGAACAAGCTGAATGAAATCTTTAACGCCCTGTCGGCGGAGCGACAGATTTCGGCTTCCTGCGGTGTACAGGCCGGTTCGCTGCTGCTAGCCGCCAACGGGGGACTCAACGGGCCGTCGATGATTGAGCCGGGCAAGCATCACCTGGCGGCCGGTGGCCAGCGACCAATCTACGAGAATAACTTTCCGGAATTGTTCTTCTATTAGATGGTGGTAGTTTAATAGAGAAG]
consensusID : consensus_7320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCGAGGTTATATTGGGCGTACAGCAAGTGGCCGTAACGAGGTNGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGTGTCGAGTACGTCGAGAAGCTGATTACAGGCACGCAAGGAGGATGGCTTCCTATCTGCTGCCCCCGACTAATGGACAACGTACCATGAGTGCACCGATGCATGGCTGAAGCACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGAGTGGCGGACATGTTTAGCATGCAGGCCGGGCTAGTGGATGTGCAACCGCGTCCAGAGCAGNNGACACCGTATCGCCCTCAACCANCACCGTGACACTATCGGCGCACCGTACACTCGTGCGGCTTGCAGCACGGCACATGNNGCTCGATCTCGGCAACAGTTGTGGATCGATGCGAGCTTACAACAGTACACTCGAAAGCGTACAGTCAGCATCGCCGGGCGTCCAGAAGGCGCTCGCNTCGCCTCCGGAGTACACATCTCTCGAGATCNATGAAGGCGCTGTGCTGGCCGAACCGACGGAA]
[+] EMBL AL930957 [CCGAGGTTATATTGGGCGTACAGCAAGTGGCCGTAACGAGGTNGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGTGTCGAGTACGTCGAGAAGCTGATTACAGGCACGCAAGGAGGATGGCTTCCTATCTGCTGCCCCCGACTAATGGACAACGTACCATGAGTGCACCGATGCATGGCTGAAGCACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGAGTGGCGGACATGTTTAGCATGCAGGCCGGGCTAGTGGATGTGCAACCGCGTCCAGAGCAGNNGACACCGTATCGCCCTCAACCANCACCGTGACACTATCGGCGCACCGTACACTCGTGCGGCTTGCAGCACGGCACATGNNGCTCGATCTCGGCAACAGTTGTGGATCGATGCGAGCTTACAACAGTACACTCGAAAGCGTACAGTCAGCATCGCCGGGCGTCCAGAAGGCGCTCGCNTCGCCTCCGGAGTACACATCTCTCGAGATCNATGAAGGCGCTGTGCTGGCCGAACCGACGGAA]
consensusID : consensus_7320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CCGCCCACGCGTCCGATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTGTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAG]
[+] EMBL BM631406 [CCGCCCACGCGTCCGATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTGTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7320#0 CCGCTGCTGCAGAACATTCTGCTGAAGAGTTTGCTGAAAGTGGGCACCCAATACCGAACC 60
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 GTTTCGTTCGAGAAAGCATTCCCCGTGTCGTTCCTGCAGCCGCTGCTCAAGATGGCACGG 120
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 GCCGCCTCCATCCCGATCCGCATCATCGTGATGCAGATCTTTCAGCAGCTGCTCGATCGG 180
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 CACCAGAACCAGCACCTGCTGAACGTGATCAACGTGAGCCACTATCCGACGCTGACGATC 240
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 GAAACGCCGTCCCGGTCGGACATACTGTTCACGCACAAGTACGGCTCGAACATACTGCAG 300
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 GCCATCATCGAGAGCATGTCGCAGGAGAACCATCTGGAGGTGTTGAAATCGTCCTACAAC 360
consensus_7320#2 ----------------CCGCCCACGCGTCCGATCTGGAGGTGTTGAAATCGTCCTACAAC 44
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 ACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTC 420
consensus_7320#2 ACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTG 104
consensus_7320#1 ------------------------------------------------------CCGAGG 6
* *
consensus_7320#0 TTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGC 480
consensus_7320#2 TTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGC 164
consensus_7320#1 TT-ATATTGGGCGTACAGCAAGTGGCCGTAAC-GAGGTNGAACTATCACCAAAGCATCGC 64
** ***************************** ***** *********************
consensus_7320#0 TGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTC 540
consensus_7320#2 TGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTC 224
consensus_7320#1 TGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTC 124
************************************************************
consensus_7320#0 GGGCCGCTG-GTCGAGTACGTCGAGAAGCTGAT-ACAGGCACGCAAGGAGGA-GGCTTCC 597
consensus_7320#2 GGGCCGCTG-GTCGAGTACGTCGAGAAGCTGAT-ACAGGCACGCAAGGAGGA-GGCTTCC 281
consensus_7320#1 GGGCCGCTGTGTCGAGTACGTCGAGAAGCTGATTACAGGCACGCAAGGAGGATGGCTTCC 184
********* *********************** ****************** *******
consensus_7320#0 TATCTGCTGCCCCCG-CTAATGGACAACGA--CAAGAGTGCACCGA-GCACG-CTGAA-C 651
consensus_7320#2 TATCTGCTGCCCCCG-CTAATGGACAACGA--CAAGAGTGCACCGA-GCACG-CTGAA-C 335
consensus_7320#1 TATCTGCTGCCCCCGACTAATGGACAACGTACCATGAGTGCACCGATGCATGGCTGAAGC 244
*************** ************* ** *********** *** * ***** *
consensus_7320#0 ACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCG-GTGGCGGA-ATGTTT-GCA-GCA 707
consensus_7320#2 ACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCG-GTGGCGGA-ATGTTT-GCA-GCA 391
consensus_7320#1 ACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGAGTGGCGGACATGTTTAGCATGCA 304
************************************ ******** ****** *** ***
consensus_7320#0 GGCCGGGCTGGAG----TGCAACCGCGTCCAGAC--AGGGACACCGTA-CGCCCTCAACC 760
consensus_7320#2 GGCCGGGCTGGAG----TGCAACCGCGTCCAGAC--AGGGACACCGTA-CGCCCTCAACC 444
consensus_7320#1 GGCCGGGCTAGTGGATGTGCAACCGCGTCCAGAGCAGNNGACACCGTATCGCCCTCAACC 364
********* * * **************** ********* ***********
consensus_7320#0 AG-ACGG--ACA-TATCGGCGCACCGT-CACTCGTG-GGTTGACACGCACAG----TGCC 810
consensus_7320#2 AG-ACGG--ACA-TATCGGCGCACCGT-CACTCGTG-GGTTGACACGCACAG----TGCC 494
consensus_7320#1 ANCACCGTGACACTATCGGCGCACCGTACACTCGTGCGGCTTGCA-GCACGGCACATGNN 423
* ** * *** ************** ******** ** * ** **** * **
consensus_7320#0 GTTCGG-------AACAGT-GTGG-TCGATGCGAGCT-ACAACGACA---TCGAAAGCGT 857
consensus_7320#2 GTTCGG-------AACAGT-GTGG-TCGATGCGAGCT-ACAACGACA---TCGAAAG--- 538
consensus_7320#1 GCTCGATCTCGGCAACAGTTGTGGATCGATGCGAGCTTACAACAGTACACTCGAAAGCGT 483
* *** ****** **** ************ ***** * *******
consensus_7320#0 CAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGAT 917
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ACAGTCAGCATCGCCGGGCGTCCAGAAGGCGCTCGCNTCGCCTCCGGAGTACACATCTCT 543
consensus_7320#0 GAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGAT 977
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 CGAGATCNATGAAGGCGCTGTGCTGGCCGAACCGACGGAA-------------------- 583
consensus_7320#0 GCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTACGCCGGACCGAACC 1037
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 CCAGCACGACGTCATCCAGAACAAGCTGAATGAAATCTTTAACGCCCTGTCGGCGGAGCG 1097
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 ACAGATTTCGGCTTCCTGCGGTGTACAGGCCGGTTCGCTGCTGCTAGCCGCCAACGGGGG 1157
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 ACTCAACGGGCCGTCGATGATTGAGCCGGGCAAGCATCACCTGGCGGCCGGTGGCCAGCG 1217
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 ACCAATCTACGAGAATAACTTTCCGGAATTGTTCTTCTATTAGATGGTGGTAGTTTAATA 1277
consensus_7320#2 ------------------------------------------------------------
consensus_7320#1 ------------------------------------------------------------
consensus_7320#0 GAGAAG 1283
consensus_7320#2 ------
consensus_7320#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||