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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1078 fasta sequence
[CGCTGCTGGTCCACGCGATGATGTTGGCGCTAGGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGCTGTACAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC-GGCCGTCATCC-TGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCTGACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACG-TAAAAAGTGTCTTTCTGT-GGGAAA-GAAAATGCCTTC-TAAAGAA-TAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATA-GTCAAAGATATTGGC-TTTTTTGGAGAAGCCAC--TGTCGTCCAACTGTCGGCAGACATTAATGTGTTGCCTTACCTAATGCCTTACAAGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGTGTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAATAAATGTCGCAAAATATAAAAAAAA]
[+] EMBL CNS08LEI [CGCTGCTGGTCCACGCGATGATGTTGGCGCTAGGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGCTGTACAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGTTTGCACCTGCATTCTGGACGCTGCTCCATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAA GCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAACTCGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGCCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCC TGTACTCAGCGTACTACAGCTACGCCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCTGACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACG TAGAAAGTGTGTTCCTATAGGAAAA GCAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGCTGGCCTTATATA GTCAAAGATATTGGC TTTTTTGGAGAAGCCAC attgt ]
[+] EMBL BX608587 [ AGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCC TGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGCTGCTGACCTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACG TAAAAAGTGTCTTTCTGT GGGAAA GAAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATA GTCAGAGATATAGGC TTT ]
[+] EMBL AGA285879 [ TTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCNTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCCTTGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGCTGCTGACCTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACGTTAAAAAGTGTCTTTCTGT GGGAAAGGAAAATGCCTTCTTAAAGAATTAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATA GT ]
[+] EMBL AGA282553 [ GCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCC TGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCCGGTCA ]
[-] EMBL CNS08LEJ [ GGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTAACTGGCGAACGGCAATCTACGAACTCGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGCCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGAACTGCTGGCGGGCCGTCATCC TGTACTCAGCGTACTACAG TACGCCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCTGACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCCACTGGAGTCACACG TAGAAAGTGTGTTCCTATAGGAAAA GCAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGCTGGCCTTATATA GTCAAAGATATTGGC TTTTTTGGAGAAGCCACATTGTCGTCCAACTGTCGGCAGACATTAATGTGTTGCCTTACCTAATGCCTTACAAGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGTGTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAATAAATGTCGCAAAATATA ]
[-] EMBL AGA280924 [ GGAAATGTCCGACTGGAGTCACACG TAAAAAGTGTCTTTCTGT GGGAAA GAAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATAGGTCAGAGATCTAAGCTTTTTTTGGAGAAGCCAC TGTCGTTCAACTGTAGGCAGACATTAATGTGTTGCCTTACATAATGCCTAACACGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGTGTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAACAAATCGCACAAAGTCTAAAAAAAA]
consensusID : consensus_7321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1005 fasta sequence
[CCCGCAGGTTNATATTGGCGTATGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGTGTACGTAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTTGCAGCAGCAGCAACAGCATCAGTGAGCGGCACAAAAATGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTACACCTGTAGCGCTACTTCGCTGGAACGGCAGCGAGGAAGCCGCACAGAAACCTGGTCCCCCACTCCCGTATCAGTCACCATGACCATGGGCAAAATACTCTGCGTGCTGATCGCCTCAGTGAACCTGGTCGCGATGGCGTACACCGTGTACTCGATCATGCACTACTTGGATGAGCAGCCGCTGCTCGAAATCTTCATCTCACCGTGTCTCGCCAACATGGTACTGGCCGTGCTGCTAGTTATAGGAATCGCAACGCAAGAAATCTCTACTCATAAGGCTGTTTANAAATATTCCTCTACGCTCAGCTCGTGTTCGCCCTGCTGATGGTGGTTATACGGTCATCGGTNNCTNCGAAAGCGTCAAAGCTGCCGATGATGGTCGAACGGCGTACTTNCAGTATTATGTTACCTGGGTACGTGCCGTAGAGCTCGTAATAGTGTCCTCCACAATCGAGAACCTGCGGAAAAGGCTCAACCCGGNGGCAAGGACTGGTACGTGTACATGCCCGTAGACAGCCGCTAATCGTGTTCATCGTAGTGTGTCTGCTGAAGGAGTGTGGCATGCCAATTCTCCGCTAGTAGCCCGNGCATAAAAAACCTTCCAAACTGNTCCTTTCACACTTANAAACAAACTTTCCGTTCCNCAACGTTCACANCATAAACCCTTAAACACANCAANACANCAACACAACAAAAACAACCANCGCCAACTGATCTNCCCACCCGCCAAANCNCACNATCAATTCCCCCCCCTTA]
[+] EMBL AL934832 [CCCGCAGGTTNATATTGGCGTATGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGTGTACGTAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTTGCAGCAGCAGCAACAGCATCAGTGAGCGGCACAAAAATGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTACACCTGTAGCGCTACTTCGCTGGAACGGCAGCGAGGAAGCCGCACAGAAACCTGGTCCCCCACTCCCGTATCAGTCACCATGACCATGGGCAAAATACTCTGCGTGCTGATCGCCTCAGTGAACCTGGTCGCGATGGCGTACACCGTGTACTCGATCATGCACTACTTGGATGAGCAGCCGCTGCTCGAAATCTTCATCTCACCGTGTCTCGCCAACATGGTACTGGCCGTGCTGCTAGTTATAGGAATCGCAACGCAAGAAATCTCTACTCATAAGGCTGTTTANAAATATTCCTCTACGCTCAGCTCGTGTTCGCCCTGCTGATGGTGGTTATACGGTCATCGGTNNCTNCGAAAGCGTCAAAGCTGCCGATGATGGTCGAACGGCGTACTTNCAGTATTATGTTACCTGGGTACGTGCCGTAGAGCTCGTAATAGTGTCCTCCACAATCGAGAACCTGCGGAAAAGGCTCAACCCGGNGGCAAGGACTGGTACGTGTACATGCCCGTAGACAGCCGCTAATCGTGTTCATCGTAGTGTGTCTGCTGAAGGAGTGTGGCATGCCAATTCTCCGCTAGTAGCCCGNGCATAAAAAACCTTCCAAACTGNTCCTTTCACACTTANAAACAAACTTTCCGTTCCNCAACGTTCACANCATAAACCCTTAAACACANCAANACANCAACACAACAAAAACAACCANCGCCAACTGATCTNCCCACCCGCCAAANCNCACNATCAATTCCCCCCCCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7321#0 CGCTGCTGGTCCACGCGATGATGTTGGCGCTAGGCGCTGGTTTTGCTTCGTGTTCTACAT 60
consensus_7321#1 ---------CCCGCAGGTTNATATTGGCG-TATGCGCTGGTTTTGCTTCGTGTTCTACAT 50
** * * * ** ****** ** ***************************
consensus_7321#0 CCCGTTCACGGGCAGTGCGTGCGC-TGTACAAGCGGGAGGTCGTGTTGTGAACGCGCTGG 119
consensus_7321#1 CCCGTTCACGGGCAGTGCGTGCGTGTACGTAAGCGGGAGGTCGTGTTGTGAACGCGCTGG 110
*********************** * ******************************
consensus_7321#0 AAAAACATGCGCTGGAAAGTGAACTGACGTTTT-GCAGCAGCAGCAACAGCATCAG-GAG 177
consensus_7321#1 AAAAACATGCGCTGGAAAGTGAACTGACGTTTTTGCAGCAGCAGCAACAGCATCAGTGAG 170
********************************* ********************** ***
consensus_7321#0 CGGCACAAAAA-GGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCT 236
consensus_7321#1 CGGCACAAAAATGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCT 230
*********** ************************************************
consensus_7321#0 GGACGCTGCTCTATCGCT-CACCTGTAGCGCT-CTTCGCTGAAGTGCCTTCAAGTGCATT 294
consensus_7321#1 GGACGCTGCTCTATCGCTACACCTGTAGCGCTACTTCGCTGGAACGGCAGCGAGGAAGCC 290
****************** ************* ******** * * * * **
consensus_7321#0 CCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTT 354
consensus_7321#1 GCACAGAAACCTG-GTCCCCCACTCCCGTATCAGTCACCATG-ACCATGGGCAAAATACT 348
* * ** * ** ** ** *** * * * * * * * *
consensus_7321#0 CGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGA-GCAT---GGGTGC-CGAACAG 409
consensus_7321#1 CTGCGTGCTGATCGCCTCAGTGAACCTGGTCGCGATGGCGTACACCGTGTACTCGATCAT 408
* * * * * * * ****** ** * * * ** * *** **
consensus_7321#0 CTGCTAATTGACTGGCGAACGGCAATCTACGAGCTT-GTGGTACCGTGTGCCTTAAACAT 468
consensus_7321#1 GCACTACTTGGATGAGCAGCCGCTGCTCGAAATCTTCATCTCACCGTGTCTCGCCAACAT 468
*** *** ** * * ** * *** * ******* * *****
consensus_7321#0 CTTCTTCGCCATGTGCTGGATCATTGGGGCGG--GCCTGTGGCGTC-CGGCCCTAATCGC 525
consensus_7321#1 GGTACTGGCCGTGCTGCTAGTTATAGGAATCGCAACGCAAGAAATCTCTACTCATAAGGC 528
* * *** ** * ** ** * * * ** * * * * **
consensus_7321#0 CATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGCGGCCGTCATCCTGTACTC 585
consensus_7321#1 TGTTTANAAATA-TTCCTCTACGCTCAGCTCG---TGTTCGCCCTGCTGATGGTG-GTTA 583
* * ** ** *** **** *** * * ** * ** * ** ** *
consensus_7321#0 AGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCT 645
consensus_7321#1 TACGGTCATCGGTNNCTNCGAAAG-----CGTCAAAGCTGCCGATGATGGTCGAACGGCG 638
** * * * * * ** * * ** ** *** * ** * **
consensus_7321#0 GACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGC 705
consensus_7321#1 TACTTNC--AGTATTATGTTACCTGG-GTACGTGCCG-TAGAGCTCGTAATAGTGTCCTC 694
**** * * ** ** **** * * ** * * *** * *** ** * *
consensus_7321#0 CATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTG 765
consensus_7321#1 CACAATCGAGAACCTGCG---GAAAAGGCTCA-ACCCGGNGGCAAGGACTGGTACG--TG 748
** * ** * * * * **** * * * ** **** ** ** **
consensus_7321#0 GAGTCACACGTAAAAAGTGTCTTTCTGTGGGAA--AGAAAATGCCTTCTAAAGAATAATA 823
consensus_7321#1 TACATGCCCGTAGACAGCCGCTAATCGTGTTCATCGTAGTGTGTCTGCTGAAGGAGTGTG 808
* * **** * ** ** *** * * ** ** ** *** * *
consensus_7321#0 G--TTACAGCTTTAAGCTATCGAT--GGCCTTATATAGTCAAAGATATTGGCTTTTTTGG 879
consensus_7321#1 GCATGCCAATTCTCCGCTAGTAGCCCGNGCATAAAAAACCTTCCAAACTGNTCCTTTC-- 866
* * ** * * **** * * ** * * * * * ** ***
consensus_7321#0 AGAAGCCACTGTCGTCCAACTGTCGGCAGACATTAATGTGTTGCCTTACCTAATGCCTTA 939
consensus_7321#1 ----ACACTTANAAACAAACTTTCCGTT--CCNCAACGT-TCACANCA--TAAACCCTTA 917
* * * **** ** * * ** ** * * * *** *****
consensus_7321#0 CAAGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGT 999
consensus_7321#1 AACACANCA-ANACANCAACACAACAAA--AACAACC--ANCGCCAACTGATCTNCCCAC 972
* ** * * ** * * *** * ****** * * *
consensus_7321#0 GTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAATAAATG 1059
consensus_7321#1 CCGCCAAANCNCACNATCAATTCCCCCCCCTTA--------------------------- 1005
** * * * * * ***
consensus_7321#0 TCGCAAAATATAAAAAAAA 1078
consensus_7321#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||