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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1791 fasta sequence
[CCGCCCACGCGTCCGCACCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATG-CGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGG-CGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGG-ACAG-CTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTGGAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGATCACATGCTCTCCACGGAAGCGAATACAATACAGCAACACACAATCTGTACGCAAAATAGTATTAAGTGCAACTAACTACACAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGTGTACTAGGAAAAGGATTACTACTATAACTACTACTGCAATTATATGCAACCGTACATAGCGTATCTCATGCTGGTACCGCCCAACTGACGGTACCGGGCCGAAGGGGGGAAAGTCAATAAGTGGGCAGTGTGGATATGCCGAGATTGAACAAAACTCTTGAACAAAGATCCCTTTTTCTAGTACACACCCCCCTTTCCTGGAAAGCACTCGAGACCAGCACGGGAAATACCTTCCGGGCACGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGAGCGAATGCAAGCAACAGGGGTGGACGGCGATATGGCACGAATGAATCATTTAAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGC--AAAACGTTCGCTAATCAAAACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGGACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTTCCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGTGTTCTTTTGTTTTTGCGCGCGACAGACATTTGTGTTTTTTTTTCTAATCGCGCAGCTTTTGTCTCTCGCTATCTCTCGCTATCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCGGAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTGTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCACATTATACCCGGGTTAGCAAAGGATATACAATTTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCTATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTTCATCTTTGGCCTGTAAGACAAAATTGGATACTAAAACGAAAAAC]
[+] EMBL BM636508 [CCGCCCACGCGTCCGCACCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTGGAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGATCACATGCTCTCCACGGAAGCGAATAC ]
[+] EMBL AL930961 [ cgTATCGTGATG CGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGG CGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGG ACAG CTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTGGAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGATCACATGCTCTCCACGGAAGCGAATACAATACAGCAACACACAATCTGTACGCAAAATAGTATTAAGTGCAACTAACTACACAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGTGTACTAGGAAAAGGATTACTACTA ]
[+] EMBL BX625761 [ CAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGTGTACTAGGAAAAGGATTACTACTATAACTACTACTGCAATTATATGCAACCGTACATAGCGTATCTCATGCTGGTACCGCCCAACTGACGGTACCGGGCCGAAGGGGGGAAAGTCAATAAGTGGGCAGTGTGGATATGCCGAGATTGAACAAAACTCTTGAACAAAGATCCCTTTTTCTAGTACACACCCCCCTTTCCTGGAAAGCACTCGAGACCAGCACGGGAAATACCTTCCGGGCACGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGAGCGAATGCAAGCAACAGGGGTGGACGGCGATATGGCACGAATGAATCATTTAAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGCAGAAAACGTTCGCTAATCAAAACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGCACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACNACCCACTTTCCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGA ]
[+] EMBL CNS08WIE [ ggggctggGAGA CAGCACGGGAAATACCTTCCGGGCACGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGATCGAATGCAAGCGACAGGGGCGGGCGGCGACATGGCACGAATGAATCATTTAAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGC AAAACGTTCGCTAATCAAAACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGGACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTTCCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGTGTTCTTTTGTTTTTGCGCGCGACAGACATTTGTGTTTTTTTTTCTAATCGCGCA CTTTTGTCTCTCGCTATCTCTCGCTATCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCGGA GAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAACGCAGTACTGTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCACATTATACCCGGGTTAGCAAAGGATATACAATTTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCTATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTT ]
[-] EMBL CNS08WIF [ AAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGC AAAACGTTCGTTTTTCAAAACGAGCAGAGACGACAAAGTGTCGTCGGAACAGGTGTACGCTCGGGCGCGCGAACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTTCCTATGCATATTACACCAACGAACGATTAATACACGCCTGGTAAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTAACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGTGTTCTTTTGTTTTTGCGCGCAACAGACATTTGTGTTTTTTTTTCTAATCGCGCAGCTTTTTTCTCTCGCTATCTCTCGCTATCTCTCTATAACTCTTTCCGTCTCTCTTTTCTCTTCCCGGAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTTTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCACATTATCCCCGGGTTAGCAAAGGATATACAA TTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCTATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTTCATCTTTGGCCTGTAAGACAAAATTGGATACTAAAACGAAAAAC]
[-] EMBL BM643140 [ GCGCGCGACAGACATTTGTG TTTTTTTCTAATCGCGCAGCTTTTGTCTCTCGCTGTCTCTCGCTTTCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCGGAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTGTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCTGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCGCATTATACCCGGGTTAGCAAAGGATATACAATTgc ]
consensusID : consensus_7322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[CCGGTCGACGCTGCTGCTGACCGGGCTGCTCATCTACGACGTGTTTTGGGTGTTCTTTTCCTCGTACATCTTCAGCACGAACGTGATGGTGAAGGTGGCGACCCGGCCGGCCGACAATCCGGTCGGCATTGTGGCGCGCAAGCTGAACCTGGGCGGCATCGTGAAGGAACCGCCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTACGACGCATGTGGGAG]
[+] EMBL BM580752 [CCGGTCGACGCTGCTGCTGACCGGGCTGCTCATCTACGACGTGTTTTGGGTGTTCTTTTCCTCGTACATCTTCAGCACGAACGTGATGGTGAAGGTGGCGACCCGGCCGGCCGACAATCCGGTCGGCATTGTGGCGCGCAAGCTGAACCTGGGCGGCATCGTGAAGGAACCGCCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTACGACGCATGTGGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7322#0 ------------------------------------------------------------
consensus_7322#1 CCGGTCGACGCTGCTGCTGACCGGGCTGCTCATCTACGACGTGTTTTGGGTGTTCTTTTC 60
consensus_7322#0 ------------------------------------------------------------
consensus_7322#1 CTCGTACATCTTCAGCACGAACGTGATGGTGAAGGTGGCGACCCGGCCGGCCGACAATCC 120
consensus_7322#0 --------------------------------CCGCCCACGCGTCCG---CACCCAAGCT 25
consensus_7322#1 GGTCGGCATTGTGGCGCGCAAGCTGAACCTGGGCGGCATCGTGAAGGAACCGCCCAAGCT 180
** * ** * * * ********
consensus_7322#0 GAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCT 85
consensus_7322#1 GAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCT 240
************************************************************
consensus_7322#0 CGGTCTGGGCGATATCGTGATGC-GGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGC 144
consensus_7322#1 CGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGC 300
*********************** ************************************
consensus_7322#0 TTACAAAAAGTCCCAGTCCACCCAGACGGC-GAGGCCGGCGTTCCACCACCGAAAGGAGT 203
consensus_7322#1 TTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGT 360
****************************** *****************************
consensus_7322#0 TGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAAC 263
consensus_7322#1 TGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAAC 420
************************************************************
consensus_7322#0 CGCGACTGTCAGTTCTGAAGTATTCAAAGCGG-ACAGC-TGCGCTGCTGTATCTCGTACC 321
consensus_7322#1 CGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACC 480
******************************** ***** *********************
consensus_7322#0 GTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTG 381
consensus_7322#1 GTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTACGACGCATGTG 540
************************************************ ***********
consensus_7322#0 GAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGAT 441
consensus_7322#1 GGAG-------------------------------------------------------- 544
*
consensus_7322#0 CACATGCTCTCCACGGAAGCGAATACAATACAGCAACACACAATCTGTACGCAAAATAGT 501
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 ATTAAGTGCAACTAACTACACAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGT 561
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTACTAGGAAAAGGATTACTACTATAACTACTACTGCAATTATATGCAACCGTACATAGC 621
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTATCTCATGCTGGTACCGCCCAACTGACGGTACCGGGCCGAAGGGGGGAAAGTCAATAA 681
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTGGGCAGTGTGGATATGCCGAGATTGAACAAAACTCTTGAACAAAGATCCCTTTTTCTA 741
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTACACACCCCCCTTTCCTGGAAAGCACTCGAGACCAGCACGGGAAATACCTTCCGGGCA 801
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 CGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGAGCGAA 861
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 TGCAAGCAACAGGGGTGGACGGCGATATGGCACGAATGAATCATTTAAGGTAGTTTAACA 921
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 ATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGT 981
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGCAAAACGTTCGCTAATCAA 1041
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 AACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGGACGTAC 1101
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTT 1161
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 CCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCG 1221
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 CAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGT 1281
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTTCTTTTGTTTTTGCGCGCGACAGACATTTGTGTTTTTTTTTCTAATCGCGCAGCTTTT 1341
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GTCTCTCGCTATCTCTCGCTATCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCG 1401
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTA 1461
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 CCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTGT 1521
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 TTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTT 1581
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 TGAGTAGGTGCGAATTGGTATAGATGTATCACATTATACCCGGGTTAGCAAAGGATATAC 1641
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 AATTTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCT 1701
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 ATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTTCATCTTTGGCCTGT 1761
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 AAGACAAAATTGGATACTAAAACGAAAAAC 1791
consensus_7322#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||