cluster # 7328

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Anopheles gambiae
cluster # 7328 cluster # 7328 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7328#0 length = 928 sequences # 6

consensus_7328#1 length = 420 sequences # 1

consensusID : consensus_7328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 928
fasta sequence

                              [GTGAAGAACGGCGCAATCTTTGGACCCTTCTTCATCTGTCCGTTCCTGATATTTTCCGGCTTCTTCATACACCTGACCGATGCGCACCCGATCATGCACTGGCTGTTCCACATCTCGTTCCTTAAGTACGCGCTGCAGGGCGCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGGATGGACTGTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGGACTTTGTCGAGGCTGTGATAGCGCTCGGTGTGATATTTTTCGTCTTCCGGGTGTCCGCCTTCTACGTGATGCAGTACCGGATGAAGAATAAGATTTAACTGTCCCCAATTCTGCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCCGTCACACAGAGCTTTTTTTGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCATTGGAAAGCAAGGGGTGCGCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAGTAGCACGAGAAGGAGCGTTTGCGTTATTATTGTAAGGTAGTAAGGTGGTGCAAGTAGGCGCTTTTTGTTTTGCAGGGAGGCGGAAAAGGAAGATCAGCTTGGCGCAGCAGTAGCATTTAAGAAACGCAGAAGACTAAAAGGTTGTCGTACCCTTGGAGGGANGGAGGGAGTGTGCGTACAACTCAACACGGCTCATATCTCTCGCCTAGCTTGCACGGTGTAAAACGAAGGCGGGTAAACGGACACTAATCCAAAAAAAATGAGAAGAAGCACAATTGGGAAGCATGCTGGTTACGTTTTATGCTGCTTCGTAAGGNGGTAAGTTGTTTTTGAATAATGTTTGCNAGTAATCATGTGATATGTGATGTAAATATAGCACGCCTTTTACGAATGGTTTTAAAAAAAA]

[+] EMBL BX624993             [GTGAAGAACGGCGCAATCTTTGGACCCTTCTTCATCTGTCCGTTCCTGATATTTTCCGGCTTCTTCATACACCTGACCGATGCGCACCCGATCATGCACTGGCTGTTCCACATCTCGTTCCTTAAGTACGCGCTGCAGGGCGCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGGATGGACTGTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGGACTTTGTCGAGGCTGTGATAGCGCTCGGTGTGATATTTTTCGTCTTCCGGGTGTCCGCCTTCTACGTGATGCAGTACCGGATGAAGAATAAGATTTAACTGTCCCCAATTCTGCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCCGTCACACAGAGCTTTTTTTGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCATTGGAAAGCAAGGGGTGCGCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAGTAGCACGAGAAGGAGCGTTTGCGTTATTATTGTAAGGTAGTAAGGTGGTGCAAGTAGGCGCTTTTTGTTTTGCAGGGAGGCGGAAAAGGAAGATCAGCTTGGCGCAGCAGTAGCATTTAAGAAACGCAGAAGACTAAAAGGTTGTCGTACCCTT                                                                                                                                                                                                                                                            ]
[+] EMBL BX611547             [                                                                                          ATCATGCACTGGCTGTTCCACATCTCGTTCCTTAAGTACGCGCTGCAGGGCGCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGGATGGACTGTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGGACTTTGTCGAGGCTGTGATAGCGCTCGGTGTGATATTTTTCGTCTTCCGGGTGTCCGCCTTCTACGTGATGCAGTACCGGATGAAGAATAAGATTTAACTGTCCCCAATTCTGCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCCGTCACACAGAGCTTTTTTTGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCATTGGAAAGCAAGGGGTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX615092             [                                                                                               GCACTGGCTGTTCCAC  CTCGTTCCTTAAGTACGCGCTGCAGGGCGCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGGATGGACTGTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGGACTTTGTCGAGGCTGTGATAGCGCTCGGTGTGATATTTTTCGTCTTCCGGGTGTCCGCCTTCTACGTGATG A TACCGGATGAAGAATAAGATTTAACTGTCCCCAATTCTGCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCCGTCACACAGAGCTTTTTTTGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCATTGGAAAGCAAGGGGTGCGCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAGTAGCACGAGAAGGAGCGTTTGCGTTATTATTGTAAG                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX621400             [                                                                                                                aggCGTTCCTTAAGTACGCGCTGCAGGGCGCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGGATGGACTGTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGGACTTTGTCGAGGCTGTGATAGCGCTCGGTGTGATATTTTTCGTCTTCCGGGTGTCCGCCTTCTACGTGATGCAGTACCGGATGAAGAATAAGATTTAACTGTCCCCAATTCTGCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCCGTCACACAGAGCTTTTTTTGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCATTGGAAAGCAAGGGGTGCGCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAGTAGCACGAGAAGGAGCGTTTGCGTTATTATTGTAAGGTAGTAAGGTGGTGCAAGTAGGCGCTTTTTGTTTTGCAGGGAGGCGGAAAAGGAAGATCAGCTTGGCGCAGCAGTAGCATTTAAGAAACGCAGAAGACTAAAAGGTTGTCGTACCCTTGGAGGGANGGAGGGAGTGTGCGTACAACTCAACACGGCTCATATCTCTCGCCTAGCTTGCACGGTGTAAAACGAAGGCGGGTAAACGGACACTAATCCAAAAAAAATGAGAAGAAGCACAATTGGGAAGCATGCTGGTTACGTTTTATGCTGCTTCGTAAGGNGGTAAGTTGTTTTTGAATAATGTTTGCNAGTAATCATGTGATATGTGATGTAAATATAGCACG                          ]
[+] EMBL AGA285750            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACATTCCATCGCATTGGAAAGCAAGGGGTGCGCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAGTAGCACGAGAAGGAGCGTTTGCGTTATTATTGTAAGGTAGTAAGGTGGTGCAAGTAGGCGCTTTTTGTTTTGCAGGGAGGCGGAAAAGGAAGATCAGCTTGGCGCAGCAGTAGCATTTAAGAAACGCATAAGACTAAAAGGTTGTCGT                                                                                                                                                                                                                                                                  ]
[-] EMBL AGA284443            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          agGGAGGGAGTGTGCGTACAACTCAACACGGCTCATATCTCTAGCCTAGCTTGCACGGTGTAAAACGAAGGCGGGTAAACGGACACTAATCCAAAAAAAATGAGAAGAAGCACAATTGGGAAGCATGCTGGTTACGTTCCCTGCTGCCTCGTAGGGTGGTAAGTTGTTTTTGAATAATGTTTGCAAGTAATCATGTGATATGTGATGTAAATATAGCACGCCTTTTACGAATGGTTTTAAAAAAAA]




>consensus_7328#0
GTGAAGAACGGCGCAATCTTTGGACCCTTCTTCATCTGTCCGTTCCTGATATTTTCCGGC
TTCTTCATACACCTGACCGATGCGCACCCGATCATGCACTGGCTGTTCCACATCTCGTTC
CTTAAGTACGCGCTGCAGGGCGCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGGATG
GACTGTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGTCGAC
ATGCTCGAGGCGGACTTTGTCGAGGCTGTGATAGCGCTCGGTGTGATATTTTTCGTCTTC
CGGGTGTCCGCCTTCTACGTGATGCAGTACCGGATGAAGAATAAGATTTAACTGTCCCCA
ATTCTGCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCCGTCACACAGAGCTTTTTT
TGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCATTGGAAAGCAAGGGGTGC
GCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAGTAGCACGAGAAGGAGCGT
TTGCGTTATTATTGTAAGGTAGTAAGGTGGTGCAAGTAGGCGCTTTTTGTTTTGCAGGGA
GGCGGAAAAGGAAGATCAGCTTGGCGCAGCAGTAGCATTTAAGAAACGCAGAAGACTAAA
AGGTTGTCGTACCCTTGGAGGGANGGAGGGAGTGTGCGTACAACTCAACACGGCTCATAT
CTCTCGCCTAGCTTGCACGGTGTAAAACGAAGGCGGGTAAACGGACACTAATCCAAAAAA
AATGAGAAGAAGCACAATTGGGAAGCATGCTGGTTACGTTTTATGCTGCTTCGTAAGGNG
GTAAGTTGTTTTTGAATAATGTTTGCNAGTAATCATGTGATATGTGATGTAAATATAGCA
CGCCTTTTACGAATGGTTTTAAAAAAAA

consensusID : consensus_7328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [GATCCCCGAGGTTGTCGTCTGATATTTCGGCTTCTTCATACACCTGACGATGCTGCACCCGATCATGCACTGGCGTGTTCCACATCTCGTTCCTTAAGTACGCGCTGCAGGGCTGCCGCGTTAGCCATCTTCGGCTACGAACGGGCCCGGATTGACTTGTGACGAAACGTACTGTCACTTTGTGTTTGCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGTGACCTTTGTCCGAGGCGTGTGATAACGCTCGGGTGTGATATTTTTCNGTCTTCCGGGTGTCTGGCTTCTACAGTTGATGCAGTACCGGATGAAGAATAAAGATTTAAACTTGTTCCCAATTCTTGCGTAGTGAAGCTAGTCAGTTTGGACCGGCTCCCCGTCCGTCACACAGANCTTTTGTTGGGGGCGCCAG]

[+] EMBL AL931530             [GATCCCCGAGGTTGTCGTCTGATATTTCGGCTTCTTCATACACCTGACGATGCTGCACCCGATCATGCACTGGCGTGTTCCACATCTCGTTCCTTAAGTACGCGCTGCAGGGCTGCCGCGTTAGCCATCTTCGGCTACGAACGGGCCCGGATTGACTTGTGACGAAACGTACTGTCACTTTGTGTTTGCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGTGACCTTTGTCCGAGGCGTGTGATAACGCTCGGGTGTGATATTTTTCNGTCTTCCGGGTGTCTGGCTTCTACAGTTGATGCAGTACCGGATGAAGAATAAAGATTTAAACTTGTTCCCAATTCTTGCGTAGTGAAGCTAGTCAGTTTGGACCGGCTCCCCGTCCGTCACACAGANCTTTTGTTGGGGGCGCCAG]




>consensus_7328#1
GATCCCCGAGGTTGTCGTCTGATATTTCGGCTTCTTCATACACCTGACGATGCTGCACCC
GATCATGCACTGGCGTGTTCCACATCTCGTTCCTTAAGTACGCGCTGCAGGGCTGCCGCG
TTAGCCATCTTCGGCTACGAACGGGCCCGGATTGACTTGTGACGAAACGTACTGTCACTT
TGTGTTTGCAAAGAAGTTCCTGAAGGAGGTCGACATGCTCGAGGCGTGACCTTTGTCCGA
GGCGTGTGATAACGCTCGGGTGTGATATTTTTCNGTCTTCCGGGTGTCTGGCTTCTACAG
TTGATGCAGTACCGGATGAAGAATAAAGATTTAAACTTGTTCCCAATTCTTGCGTAGTGA
AGCTAGTCAGTTTGGACCGGCTCCCCGTCCGTCACACAGANCTTTTGTTGGGGGCGCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7328#0      GTGAAGAACGGCGCAATCTTTGGACCCTTCTTCATCTGTCCGTTCCTGATATTTTCCGGC 60
consensus_7328#1      -------------------------GATCCCCGAGGTTGTCGT--CTGATATTT--CGGC 31
                                                 * *   *  *   ***  *********  ****

consensus_7328#0      TTCTTCATACACCTGACCGATGC-GCACCCGATCATGCACTGGC-TGTTCCACATCTCGT 118
consensus_7328#1      TTCTTCATACACCTGAC-GATGCTGCACCCGATCATGCACTGGCGTGTTCCACATCTCGT 90
                      ***************** ***** ******************** ***************

consensus_7328#0      TCCTTAAGTACGCGCTGCAGGGC-GCCGCGTTAGCCATCTTCGGCTACGACCGGCCCCGG 177
consensus_7328#1      TCCTTAAGTACGCGCTGCAGGGCTGCCGCGTTAGCCATCTTCGGCTACGAACGGGCCCGG 150
                      *********************** ************************** *** *****

consensus_7328#0      ATGGACT-GTGACGAAACGTACTGTCACTTTGTGTTGCCAAAGAAGTTCCTGAAGGAGGT 236
consensus_7328#1      ATTGACTTGTGACGAAACGTACTGTCACTTTGTGTTTGCAAAGAAGTTCCTGAAGGAGGT 210
                      ** **** ****************************  **********************

consensus_7328#0      CGACATGCTCGAGGCGGA--CTTTGTC-GAGGC-TGTGATAGCGCTCGG-TGTGATATTT 291
consensus_7328#1      CGACATGCTCGAGGCGTGACCTTTGTCCGAGGCGTGTGATAACGCTCGGGTGTGATATTT 270
                      ****************    ******* ***** ******* ******* **********

consensus_7328#0      TTCG-TCTTCCGGGTGTCCGCCTTCTACG--TGATGCAGTACCGGATGAAGAATAA-GAT 347
consensus_7328#1      TTCNGTCTTCCGGGTGTCTGGCTTCTACAGTTGATGCAGTACCGGATGAAGAATAAAGAT 330
                      ***  ************* * *******   ************************* ***

consensus_7328#0      TTAA--CTGTCCCCAATTCT---GCTAGGAAGCTAGTCAGTTTGCACCGCCTCCCGTCCC 402
consensus_7328#1      TTAAACTTGTTCCCAATTCTTGCGTAGTGAAGCTAGTCAGTTTGGACCGGCTCCCCGTCC 390
                      ****   *** *********   *    **************** **** *****   **

consensus_7328#0      GTCACACAGAGCTTTTTTTGTTTGGGGGCCGCCAGCTCACAACTCTCACATTCCATCGCA 462
consensus_7328#1      GTCACACAGANCTTTTGTTG-----GGGGCGCCAG------------------------- 420
                      ********** ***** ***     *** ******                         

consensus_7328#0      TTGGAAAGCAAGGGGTGCGCACCACCCCGAAGGGAATACAAATTTTACGGTAGATGGTAG 522
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      TAGCACGAGAAGGAGCGTTTGCGTTATTATTGTAAGGTAGTAAGGTGGTGCAAGTAGGCG 582
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      CTTTTTGTTTTGCAGGGAGGCGGAAAAGGAAGATCAGCTTGGCGCAGCAGTAGCATTTAA 642
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      GAAACGCAGAAGACTAAAAGGTTGTCGTACCCTTGGAGGGANGGAGGGAGTGTGCGTACA 702
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      ACTCAACACGGCTCATATCTCTCGCCTAGCTTGCACGGTGTAAAACGAAGGCGGGTAAAC 762
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      GGACACTAATCCAAAAAAAATGAGAAGAAGCACAATTGGGAAGCATGCTGGTTACGTTTT 822
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      ATGCTGCTTCGTAAGGNGGTAAGTTGTTTTTGAATAATGTTTGCNAGTAATCATGTGATA 882
consensus_7328#1      ------------------------------------------------------------
                                                                                  

consensus_7328#0      TGTGATGTAAATATAGCACGCCTTTTACGAATGGTTTTAAAAAAAA 928
consensus_7328#1      ----------------------------------------------