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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1039 fasta sequence
[CTGGAAAAACGTAAACAAACGTGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAAGGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGA-CTCCAG-AAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGCGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAG--G-CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC-TGGTGAAGGATCCGGCCGACAAG-AAGTCACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGGATATCCTGAGCAATTCCGTACCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCATCAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACCACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCAAAAGCCATTTCTGCAGGTTTAAGTGTGTGATTAAGTAACTTCAAGATTCAAAACTCAATAAAAATGACCTAGATGCTAAGGGGGAACCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CNS08S6Q [CTGGAAAAACGTAAACAAACGTGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGCACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAAGGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGA CTCCAGAAAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGCGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAG G CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC TGGTGAAGGATCCGGCCGACAAG AAGTCACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGTATATCCTGAGCAATTCCGTACCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCATCAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACCACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCAAAAGCC ]
[+] EMBL BM625046 [ ccgCGTAAACAAACGGGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTATCTGTTCGACAAGGAAGCGATCCTAACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGAGCTCCAG AAGAAGCTGGACAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGTGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAGACG CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC TGGTGAAGGATCCGG ]
[+] EMBL CNS08M9F [ CAAACGTGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAAGGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGA GTCCAG AAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTTACACTGAATGAACAGCCCAGCACGAGCGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAG GCCCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC TGGTGAAGGATCCGGCCGACAAG AAGTCACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGGATATCCTGAGCAATTCCGTACCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTAT ]
[+] EMBL BM588242 [ cCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTATCTGTTCGACAAGGAAGCGATCCTAACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGAGCTCCAG AAGAAGCTGGACAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGTGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAGACG CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGCTTGGTGAAGGATCCGGCCGACAAGAAAGTCACTG ]
[-] EMBL CNS08S6R [ CACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCAT GATATCCTGAGCAATTCCGTCCCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCATCAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACCACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCAAAAGCCATTTCTGCAGGTTTAAGTGTGTGATTAAGTAACTTCAAGATTCAAAACTCAATAAAAATGACCTAGATGCTAAGGGGGAACCTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[GGCTCAGGCAAGAATTCCCCGAGGTTAANGGGNGCACTCATTACTGTCTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGGCATGCTAGCAAATTGTACTGCCGGGGCCGTTTACACTGTACCACGAGAAGAAGAAGGATGCGGCAACTACGTGGCTATCGGCACAACTGTACCCTGTACGCATCGGGAAAGATTCTGGTCAAGAGCCTTCGGACTGCTGTNNACCCTACACCTTGCCAGACGTGTCGGAATCCAGGTAACTACACCTAAACGATGGCCTATAGCTGTCCGACACAAGGCACAAGGCGGAACTCCCGTAAACCCGTTACCAAGTTCAACTCCGTTCGGTCANNACGTCACCGGCNANCCCGGCACGCTTANCCCAGGGCCCCCGGGGCACCCCGCACTTGGCACNACTGGGAGGCTTACCCGNGANTCCAACAGTCCACAGCAAATTGAAACANGCCCACNGNGNCAACCGNCAGCTGGGGCNCAGNTGCCACGGCGCAACTTGCCGCGGCCCCACANACAC]
[+] EMBL AL696417 [GGCTCAGGCAAGAATTCCCCGAGGTTAANGGGNGCACTCATTACTGTCTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGGCATGCTAGCAAATTGTACTGCCGGGGCCGTTTACACTGTACCACGAGAAGAAGAAGGATGCGGCAACTACGTGGCTATCGGCACAACTGTACCCTGTACGCATCGGGAAAGATTCTGGTCAAGAGCCTTCGGACTGCTGTNNACCCTACACCTTGCCAGACGTGTCGGAATCCAGGTAACTACACCTAAACGATGGCCTATAGCTGTCCGACACAAGGCACAAGGCGGAACTCCCGTAAACCCGTTACCAAGTTCAACTCCGTTCGGTCANNACGTCACCGGCNANCCCGGCACGCTTANCCCAGGGCCCCCGGGGCACCCCGCACTTGGCACNACTGGGAGGCTTACCCGNGANTCCAACAGTCCACAGCAAATTGAAACANGCCCACNGNGNCAACCGNCAGCTGGGGCNCAGNTGCCACGGCGCAACTTGCCGCGGCCCCACANACAC]
consensusID : consensus_7332#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[CGCCGAGTTATTAAGAAAAGCTAGTTAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCCTGGGGGTGTTTCCCGGACGAATTCCCGTAGGAGCAGTACAAACAACAACGACGGCATTATCCCGCNGGTCGCGTTACCAAGAANGAGGGGGCAAAAATACGGGCCCCCCNTTTTANTTTCCCCCACGCGGAAAAACCCCCCTTTNTGGGGGCCTTTATGGGGTTATATTCCACCCATGTTACATCCCTTTAGGGCCAAAAGGA]
[+] EMBL AL934910 [CGCCGAGTTATTAAGAAAAGCTAGTTAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCCTGGGGGTGTTTCCCGGACGAATTCCCGTAGGAGCAGTACAAACAACAACGACGGCATTATCCCGCNGGTCGCGTTACCAAGAANGAGGGGGCAAAAATACGGGCCCCCCNTTTTANTTTCCCCCACGCGGAAAAACCCCCCTTTNTGGGGGCCTTTATGGGGTTATATTCCACCCATGTTACATCCCTTTAGGGCCAAAAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7332#0 ----CTGGAAAAACGT-----AAACAAACGTGCGCACTCATTACTGTTTCGTGAAATTTT 51
consensus_7332#1 GGCTCAGGCAAGAATTCCCCGAGGTTAANGGGNGCACTCATTACTGTCTCGTGAAATTTT 60
consensus_7332#2 -------------------------------------------------CGCCGAGT--T 9
** * * *
consensus_7332#0 ATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAG-AAATTGTACTGCCGGGGCCG 110
consensus_7332#1 ATTAAGAAAAGCTAGTTAAATTATGACCCGGCATGCTAGCAAATTGTACTGCCGGGGCCG 120
consensus_7332#2 ATTAAGAAAAGCTAGTTAA-TTATGACCCGCCACGCTAG-AAATTGTACTGCCGGGGCCG 67
******************* ********** ** ***** ********************
consensus_7332#0 TTTACAC-GTACCACGAGAAGAAGAAGGATGCGGCCA--ACTCGGGCTTCGGCACAAC-- 165
consensus_7332#1 TTTACACTGTACCACGAGAAGAAGAAGGATGCGGCAACTACGTGGCTATCGGCACAACTG 180
consensus_7332#2 TTTACAC-GTACCACGAGAAGAAGAAGGATGCGGCCA--ACTCGGGCTTCGGCACAAC-G 123
******* *************************** * ** ** **********
consensus_7332#0 -GTCCCGT-CGCAT---CGGGAAAGATTC-GGTCAAGAGCTTC--GACTGCTGTTCCCTC 217
consensus_7332#1 TACCCTGTACGCAT---CGGGAAAGATTCTGGTCAAGAGCCTTCGGACTGCTGTNNACCC 237
consensus_7332#2 TCCCCTGGGGGTGTTTCCCGGACGAATTCCCGTAGGAGCAGTACAAACAACAACGACGGC 183
** * * * * *** **** ** * ** * *
consensus_7332#0 ---ACCTTGC-AGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAA 273
consensus_7332#1 TACACCTTGCCAGACGTGTCGGAATCCAG--GTAACTACAC----CTAAACGATGGCCTA 291
consensus_7332#2 ATTATCCCGCNGGTCGCGTTACCAAGAANGAGGGGGCAAAAA----TACGGGCCCCCCNT 239
* * ** * ** ** * * * * ** * *
consensus_7332#0 GGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGA 333
consensus_7332#1 --TAGCTGTCC-GACACAAGGCA---CAAGGCGGAAC---TCCCGTAAACCCGTTACCAA 342
consensus_7332#2 TTTANTTTCCCCCACGCG---------GAAAAACCCCCCTTTNTGGGGGCCTTTATGGGG 290
* ** ** * * * * *
consensus_7332#0 GTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGC-GGACT 392
consensus_7332#1 GTTCAAC--TCCGTTCGGTCANNACGTCACCGGCNANCCCGGCACGCTTANCCCAGGGCC 400
consensus_7332#2 TTATATTCCACCCATGTTACATCCCTTTAGGGCCAAAAGGA------------------- 331
* * * ** * * *
consensus_7332#0 CCAGAAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGT 452
consensus_7332#1 CCCGGGGCACCCCG---CACTTGGCACNACTGGGAGGCTTACC--CGNGANTCCAACAGT 455
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 C-ACACTGAAT--GAACAGCCCAGCACGAGCGGC-GCCATCTCGAACGTGTCGCTCGGCA 508
consensus_7332#1 CCACAGCAAATTGAAACANGCCCACNGNGNCAACCGNCAGCTGGGGCNCA--GNTGCCAC 513
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 AGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAGGCCGGCCGCCAAGGTGTCGCGC 568
consensus_7332#1 GGCGCAACTTGCCGCG-GCCCCACANACAC------------------------------ 542
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 ATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAG 628
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 GATCTGATCGAGGTGAAGTTTACGCTGGTGAAGGATCCGGCCGACAAGAAGTCACTGATT 688
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 GCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGGATATCCTGAGCAATTCCGTACC 748
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 GTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCAT 808
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 CAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACC 868
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 ACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCA 928
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 AAAGCCATTTCTGCAGGTTTAAGTGTGTGATTAAGTAACTTCAAGATTCAAAACTCAATA 988
consensus_7332#1 ------------------------------------------------------------
consensus_7332#2 ------------------------------------------------------------
consensus_7332#0 AAAATGACCTAGATGCTAAGGGGGAACCTAAAAAAAAAAAAAAAAAAAAAA 1039
consensus_7332#1 ---------------------------------------------------
consensus_7332#2 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||