cluster # 7345

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Anopheles gambiae
cluster # 7345 cluster # 7345 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7345#0 length = 755 sequences # 6

consensus_7345#1 length = 328 sequences # 1

consensusID : consensus_7345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 755
fasta sequence

                              [CCGCCCACGCGTCCGGGCGATGGTGGTGGGGCAGTGGCTAGCGCTTCTTCGACTGCAGCTTCCACCATGGAAGCGTCCGCATCGCCAGCCAAAGTGGGCAGCCACAATCCGGCCCACACCATCGCGGCGGCCCTAACGTACACGAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCACAGTTTGCGCGGAAAGTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACGCTGCACCAGGAATGGGAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATCGGCCATACCGGGCTGCACTACCACCATCTCCAGCAGCCGACGGGTGCGGCCGCAACCAGCCTCATGACCAGTGCCTTCGCTTCGGTCAGCTCGTTCTGGAAGGGTTGGACGGGGAAGTAAAACGAATCTTGATCGCCAGACTCCAGACCTTCATCGCCGACTCATTCCTGTAC]

[+] EMBL BM582710             [CCGCCCACGCGTCCGGGCGATGGTGGTGGGGCAGTGGCTAGCGCTTCTTCGACTGCAGCTTCCACCATGGAAGCGTCCGCATCGCCAGCCAAAGTGGGCAGCCACAATCCGGCCCACACCATCGCGGCGGCCCTAACGTACACGAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCACAGTTTGCGCGGAAAGTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACGCTGCACCAGGAATGGGAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATTGGCCATACCGGGCTGCACTACCACC                                                                                                                                                    ]
[+] EMBL AGA285578            [                                                                                                                                 GCCCTAACGTACACCAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCACAGTTTGCGCGGAAAGTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATTGGAACAGCTGCCTGTCGGACGCGATGGAGCAGCTGCTGAT                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AGA280873            [                                                                                                                                               GAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCACAGTTTGCGCGGAAAGTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACGCTGCACCAGGAATGGGAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATTGGCCATACCGGGCTGCACTACCACCATCTCCAGCAG                                                                                                                                         ]
[-] EMBL AGA284488            [                                                                                                                                                             CGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCACAGTTTGCGCGGAAAGTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACGCTGCACCAGGAATGGGAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATCGGCCATACCGGGCTGCACTACCACCATCTCCAGCAG                                                                                                                                         ]
[+] EMBL BX623904             [                                                                                                                                                                                                       TGTCGTACGCGGACTTTTGCACGACCACTCTGTCCGAGGCACAGTTTGCGCGGAAAGTGGCGCGCCTGAACGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTCGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCCGAAGATGAAACAACGCTGCACCAGGAATGGGAAGCCGTGCCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATCGGCCATACCGGGCTGCACTACCACCATCTCCAGCAGCCGACGGGTGCGGCCGCAACCAGCCTCATGACCAGTGCCTTCGCTTCGGTCAGCTCGTTCTGGAAGGGTTGGACGGGGAAGTAAAACGAATCTTGATCGCCAGACTCCAGACCTTCATCGCCGACTCATTCCTGTAC]
[-] EMBL AGA284275            [                                                                                                                                                                                                                                                                                                                      TGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACGCTGCACCAGGAATGGGAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATCGGCCATACCGGGCTGCACTACCACCATCTCCAGCAG                                                                                                                                         ]




>consensus_7345#0
CCGCCCACGCGTCCGGGCGATGGTGGTGGGGCAGTGGCTAGCGCTTCTTCGACTGCAGCT
TCCACCATGGAAGCGTCCGCATCGCCAGCCAAAGTGGGCAGCCACAATCCGGCCCACACC
ATCGCGGCGGCCCTAACGTACACGAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGAC
GTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCA
CAGTTTGCGCGGAAAGTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAA
GGCTGTCGCTTGAACGACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTA
AAGTCGCCCGAGCTGGGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCG
ATGGAGCAGCTGCTGATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACG
CTGCACCAGGAATGGGAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCG
TACCCACCGATGATGGCACTGGACCAGAGGCGCACCACGATCGGCCATACCGGGCTGCAC
TACCACCATCTCCAGCAGCCGACGGGTGCGGCCGCAACCAGCCTCATGACCAGTGCCTTC
GCTTCGGTCAGCTCGTTCTGGAAGGGTTGGACGGGGAAGTAAAACGAATCTTGATCGCCA
GACTCCAGACCTTCATCGCCGACTCATTCCTGTAC

consensusID : consensus_7345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [GTCCGGGGGCAGTGGATTTTGCAGGACAGCTTCGGCGAGGTGCAGCATGTGATCGTTGCCCCTGCCCTGCCCGGCACCGGCAACTACTCCGCGTACAACGAGTGGGCAACGGGCGGTGGCGATGGTGGTGGTGGTACGGTGGCTAGCGCTTCTTCGACGGCCACTTCCACCATGGAAGCGTCCGCATCGCCAGCAAAAGTCGGCAGCCACAATCCGGCACACACCATCGCGGCGGCCCTAACGTACACCAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGA]

[+] EMBL AGA285792            [GTCCGGGGGCAGTGGATTTTGCAGGACAGCTTCGGCGAGGTGCAGCATGTGATCGTTGCCCCTGCCCTGCCCGGCACCGGCAACTACTCCGCGTACAACGAGTGGGCAACGGGCGGTGGCGATGGTGGTGGTGGTACGGTGGCTAGCGCTTCTTCGACGGCCACTTCCACCATGGAAGCGTCCGCATCGCCAGCAAAAGTCGGCAGCCACAATCCGGCACACACCATCGCGGCGGCCCTAACGTACACCAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTATCGCGTGTCGTACGCGGACTTTTGCACGA]




>consensus_7345#1
GTCCGGGGGCAGTGGATTTTGCAGGACAGCTTCGGCGAGGTGCAGCATGTGATCGTTGCC
CCTGCCCTGCCCGGCACCGGCAACTACTCCGCGTACAACGAGTGGGCAACGGGCGGTGGC
GATGGTGGTGGTGGTACGGTGGCTAGCGCTTCTTCGACGGCCACTTCCACCATGGAAGCG
TCCGCATCGCCAGCAAAAGTCGGCAGCCACAATCCGGCACACACCATCGCGGCGGCCCTA
ACGTACACCAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTAT
CGCGTGTCGTACGCGGACTTTTGCACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7345#0      ------------------------------------------------------------
consensus_7345#1      GTCCGGGGGCAGTGGATTTTGCAGGACAGCTTCGGCGAGGTGCAGCATGTGATCGTTGCC 60
                                                                                  

consensus_7345#0      ------------------------------------------CCGCCCACGCGTCCGGGC 18
consensus_7345#1      CCTGCCCTGCCCGGCACCGGCAACTACTCCGCGTACAACGAGTGGGCAACGGGCGGTGGC 120
                                                                  * * *** *    ***

consensus_7345#0      GATGGTGGTGGGG---CAGTGGCTAGCGCTTCTTCGACTGCAGCTTCCACCATGGAAGCG 75
consensus_7345#1      GATGGTGGTGGTGGTACGGTGGCTAGCGCTTCTTCGACGGCCACTTCCACCATGGAAGCG 180
                      *********** *   * ******************** **  *****************

consensus_7345#0      TCCGCATCGCCAGCCAAAGTGGGCAGCCACAATCCGGCCCACACCATCGCGGCGGCCCTA 135
consensus_7345#1      TCCGCATCGCCAGCAAAAGTCGGCAGCCACAATCCGGCACACACCATCGCGGCGGCCCTA 240
                      ************** ***** ***************** *********************

consensus_7345#0      ACGTACACGAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTAT 195
consensus_7345#1      ACGTACACCAGCCAGCTGGTGGCGCTGCTTGGCTACTATCTGGACGTTCGGTTACCGTAT 300
                      ******** ***************************************************

consensus_7345#0      CGCGTGTCGTACGCGGACTTTTGCACGACCACACTGTCCGAGGCACAGTTTGCGCGGAAA 255
consensus_7345#1      CGCGTGTCGTACGCGGACTTTTGCACGA-------------------------------- 328
                      ****************************                                

consensus_7345#0      GTGGCCCGCCTGAATGCGGACATTGTGTTCCTGTGCCACACACAAGGCTGTCGCTTGAAC 315
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      GACATGAACCCGACCCACACGCTGGAGAATCTGCTCTGTCTGCTAAAGTCGCCCGAGCTG 375
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      GGCCACTGCGGACCGACCGATCGGAACAGCTGCCTGTCGGACTCGATGGAGCAGCTGCTG 435
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      ATGCAAAACATCGGCGAGGATTCCGACTCGGAAGATGAAACAACGCTGCACCAGGAATGG 495
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      GAAGCCGTACCGAGCAACCTTTCGCCGGTGACGACCGAACCGCCGTACCCACCGATGATG 555
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      GCACTGGACCAGAGGCGCACCACGATCGGCCATACCGGGCTGCACTACCACCATCTCCAG 615
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      CAGCCGACGGGTGCGGCCGCAACCAGCCTCATGACCAGTGCCTTCGCTTCGGTCAGCTCG 675
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      TTCTGGAAGGGTTGGACGGGGAAGTAAAACGAATCTTGATCGCCAGACTCCAGACCTTCA 735
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      TCGCCGACTCATTCCTGTAC 755
consensus_7345#1      --------------------