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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 686 fasta sequence
[ACCAGAAAACAGGAACAAAAACGCCTAAATG-A-AAAAGTTTGTAAGGATGGAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGATTGAGAACGTTTCCGAAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCA-AATCGAACATTTTACAGTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACA-CTTAT-GGCT-CTTCAACGGACAATTTT-AATCTTTGCCGTTTTTCACCCATTGGTATAATATAAC-TCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAAC]
[+] EMBL BX612783 [ACCAGAAAACAGGAACAAAAACGCCTAAATG A AAAAGTTTGTAAGGATGGAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGATTGAGAACGTTTCCGAAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCA AATCGAACATTTTACAGTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACA CTTAT GGCT CTTCAACGGACAATTTT AATCTTTGCCGTTTTTCACCCATTGGTATAATATAAC TCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAAC]
[+] EMBL BX619705 [ AACAGGAACAAAAACGCCTAAATGNANAAAAGTTTGTAAGGATGGAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAAATTGAGAACGTTTCCGAAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCAGTATCGAACATTTTACAGTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACACCTTATCNGCTCCTTCAACGGACAATTTTAAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACNTNCTTTG ]
[-] EMBL CNS08QUT [ GTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACA CTTAT GGCT CTTCAACGGACAATTTT AATCTTTGCCGTTTTTCACCCATTGGTATAATATAAC TCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTt ]
consensusID : consensus_7346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[GATCGCCCCGAGGTTAATCTTCGCCTCAGTCATTCTCTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTGTATCATGGTATTTGTCTCTTCACCCGTCGATACTACTATCTCCGCCCTTCGTAATTTGGTAAGAATGTGTAACTTAGATGTCTCATAACCAAGANTAACTTCAAATAACTCGGTCATTCTTAATCACACTTGTACATTACNACNGGCCCACGCACCCAANAAAACAAACAAACAAACGCAGAACGTTACAACAGAAGGAAAGCTATCAACAGTTGCTGCACAACCAGAAAACAGGAACAANCAACGCCTAAATGAACAAAGTTTGTAAGGATGGCAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGCATTCGAGCAACGTTCTCCGAACAAGACTTCGTAAAACACACATAANATCAACAACAACTNTTAATCAAATCGAACATTTTACAGNTTCTGCAAACNGCAACTGGACACTNTCAGCAAAAGTGTACATGACACTT]
[+] EMBL AL931021 [GATCGCCCCGAGGTTAATCTTCGCCTCAGTCATTCTCTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTGTATCATGGTATTTGTCTCTTCACCCGTCGATACTACTATCTCCGCCCTTCGTAATTTGGTAAGAATGTGTAACTTAGATGTCTCATAACCAAGANTAACTTCAAATAACTCGGTCATTCTTAATCACACTTGTACATTACNACNGGCCCACGCACCCAANAAAACAAACAAACAAACGCAGAACGTTACAACAGAAGGAAAGCTATCAACAGTTGCTGCACAACCAGAAAACAGGAACAANCAACGCCTAAATGAACAAAGTTTGTAAGGATGGCAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGCATTCGAGCAACGTTCTCCGAACAAGACTTCGTAAAACACACATAANATCAACAACAACTNTTAATCAAATCGAACATTTTACAGNTTCTGCAAACNGCAACTGGACACTNTCAGCAAAAGTGTACATGACACTT]
consensusID : consensus_7346#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGAATATCAGAAAGTGTACATGACACTTATGGCTCTTCAACGGACAATTTTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAACGACGATAAGCAAAAAGAAAACAAAAAAAAGAAGCGAAACAAGAATCAGTGGAGAAGGAAGAGTGTGTTGTGTAAACGAATTAGAAAAGAATACCCGTGTCCCAGGGTAGCAGGGAAATGAAATTGAGAGCATAAAAT]
[+] EMBL BM639142 [CCGCCCACGCGTCCGCCCACGCGTCCGGGAATATCAGAAAGTGTACATGACACTTATGGCTCTTCAACGGACAATTTTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAACGACGATAAGCAAAAAGAAAACAAAAAAAAGAAGCGAAACAAGAATCAGTGGAGAAGGAAGAGTGTGTTGTGTAAACGAATTAGAAAAGAATACCCGTGTCCCAGGGTAGCAGGGAAATGAAATTGAGAGCATAAAAT]
consensusID : consensus_7346#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 324 fasta sequence
[TAATTTCTAATTGACATCTTTTGCTCTCGCATACCAGATACTGAAAAAAAAACAGTGATGTCAAATCTTCGCCTCAGTCATTCTTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTATNCATTGGTATTTGTCTCTTCACCCGTCGATACTCTTCTCCGCCCTTCGTAATTTGGAAAGAATGTGTAATTAGATGTCTCATAGCCAAGAATAATTAAATAATCGGTCATTTTAATCACACTTGTACATTAAAAGGAAAAGAAAAAAAAAACAAACAAACNAACTCNGAACGT]
[+] EMBL BX619320 [TAATTTCTAATTGACATCTTTTGCTCTCGCATACCAGATACTGAAAAAAAAACAGTGATGTCAAATCTTCGCCTCAGTCATTCTTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTATNCATTGGTATTTGTCTCTTCACCCGTCGATACTCTTCTCCGCCCTTCGTAATTTGGAAAGAATGTGTAATTAGATGTCTCATAGCCAAGAATAATTAAATAATCGGTCATTTTAATCACACTTGTACATTAAAAGGAAAAGAAAAAAAAAACAAACAAACNAACTCNGAACGT]
[+] EMBL CNS08QUS [ cttAAAAAAACAGTGATG CAAATCTTCGCCTCAGTCATTCTTAGGATGCTGACAGTTGTATACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTAT CATTGGTATTTGTCTCTTCACCCGTCGATACTCTTCTCCGCCCTTCGTAATTTGGAAAGAATGTGTAATTAGATGTCTCATAGCCAAGAATAATTAAATAATCGGTCATTTTAATCACACTTGTACATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7346#1 ------------------------------------------------------------
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 ACCAGAAAACAGGAACAAAAACGCCTAAATGAAAAAGTTTGTAAGGATGGAATATTAGGC 60
consensus_7346#2 ------------------------------------------------------------
consensus_7346#1 ------------------------------------------------------------
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 GCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGT 120
consensus_7346#2 ------------------------------------------------------------
consensus_7346#1 ------------------------------------------------------------
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 TACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAG 180
consensus_7346#2 ------------------------------------------------------------
consensus_7346#1 ------------------------------------------------------------
consensus_7346#3 -------------------------TAATTTCTAATTGACATCTTTTGCTCTCGCATACC 35
consensus_7346#0 AATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGATTGAGAACGTTTCCG 240
consensus_7346#2 ------------------------------------------------------------
consensus_7346#1 ------------GATCGCCCCGAGGTTAA-TCTTCGCCTCAGTCATTCTCTAGGATGCTG 47
consensus_7346#3 AGATACTGAAAAAAAAACAGTGATGTCAAATCTTCGCCTCAGTCATTCT-TAGGATGCTG 94
consensus_7346#0 AAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCAAATCGAACATTTTACAGTTG 300
consensus_7346#2 ------------------------------------------CCGCCCACGCGTCCGCCC 18
* * *
consensus_7346#1 ACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTT-GTATCA- 105
consensus_7346#3 ACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTATNCA 154
consensus_7346#0 AAAAGAATTGGAATATCAGAAAGTGTACAT-GACACTTATGGCTCTTCAACGGACAATT- 358
consensus_7346#2 ACGCGTCCGGGAATATCAGAAAGTGTACAT-GACACTTATGGCTCTTCAACGGACAATT- 76
* * * ** * * * * **** * * * * * *
consensus_7346#1 -TGGTATTTGTC--TCTTCACCCGTCGATACTAC-TATCTCCGCCCTTCGTAATTTGGTA 161
consensus_7346#3 TTGGTATTTGTC--TCTTCACCCGTCGATACTCT-T--CTCCGCCCTTCGTAATTTGGAA 209
consensus_7346#0 TTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGT 418
consensus_7346#2 TTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGT 136
* * **** * * ******* * * ** * **** ** * *
consensus_7346#1 AGAATGTGTAACTTAGATGTCTCATAACCAAGANTAACTTCAAATAACTCGGTCATTCTT 221
consensus_7346#3 AGAATGTGTAA-TTAGATGTCTCATAGCCAAGAATAATT--AAATAA-TCGGTCATT-TT 264
consensus_7346#0 ATTACTTTTGCCACGAGCGTTAAATAGCCA-GCATTTTAGCAGTTTGAAGTGTTGTT-TC 476
consensus_7346#2 ATTACTTTTGCCACGAGCGTTAAATAGCCA-GCATTTTAGCAGTTTGAAGTGTTGTT-TC 194
* * * * ** *** *** * * * * ** ** *
consensus_7346#1 AATCACACTTGTACATTACNACNGGCCCACGCACCCAANAAAACAAACAAACAA-AC-GC 279
consensus_7346#3 AATCACACTTGTACATTAAAAGGAAAAGAAA-----AAAAAAACAAACAAACNA-AC-TC 317
consensus_7346#0 CTCCATAGC-ATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTC 535
consensus_7346#2 CTCCATAGC-ATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTC 253
** * *** ** * * * ******* ** * * ** *
consensus_7346#1 AGAACGTTACAACAGAAGGAAAGCTATCAACAGTTGCTGCACAACCAGAAAACAGGAACA 339
consensus_7346#3 NGAACGT----------------------------------------------------- 324
consensus_7346#0 TGCACATATTTATTGAAAAAAA--TAACGACGAAAACAAAAACAACTGCAACAAGTGTGT 593
consensus_7346#2 TGCACATATTTATTGAAAAAAA--TAACGACGAAAACAAAAACAACTGCAACAAGTGTGT 311
* ** *
consensus_7346#1 ANCAACGCCTAAATGAACAAAGTTTGTAAGGATGGCAATATTAGGCGCCGAGAAGAGCCG 399
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 GATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACG 653
consensus_7346#2 GATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACG 371
consensus_7346#1 TTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAA 459
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 TAA-GTAACGTATTTATTTCTAACAAAAATGAAC-------------------------- 686
consensus_7346#2 TAA-GTAACGTATTTATTTCTAACAAAAATGAACGACGATAAGCAAAAAGAAAACAAAAA 430
consensus_7346#1 AATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCA 519
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 ------------------------------------------------------------
consensus_7346#2 AAAGAAGCGAAACAAGAATCAGTGGAGAAGGAAGAGTGTGTTGTGTAAACGAATTAGAAA 490
consensus_7346#1 GAGTTATTGCTGCTTTCGGTTATGGCGTAGCATTCGAGCAACGTTCTCCGAACAAGACTT 579
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 ------------------------------------------------------------
consensus_7346#2 AGAATACCCGTGTCCCAGGGTAGCAGGGAAATGAAATTGAGAGCATAAAAT--------- 541
consensus_7346#1 CGTAAAACACACATAANATCAACAACAACTNTTAATCAAATCGAACATTTTACAGNTTCT 639
consensus_7346#3 ------------------------------------------------------------
consensus_7346#0 ------------------------------------------------------------
consensus_7346#2 ------------------------------------------------------------
consensus_7346#1 GCAAACNGCAACTGGACACTNTCAGCAAAAGTGTACATGACACTT 684
consensus_7346#3 ---------------------------------------------
consensus_7346#0 ---------------------------------------------
consensus_7346#2 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||