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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence
[CCGCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGGGCTTTTTAAGGATATATTACATGCACGGTGGTGCGCGGATGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGGTTCAGTTCTGCTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGTTGGTAGGATTACACAAACACATAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACGCACACACACACACAC]
[+] EMBL BM594746 [CCGCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAA ]
[+] EMBL BM630191 [ ccgAACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGGGCTTTTTAAGGATATATTACATGCACGGTGGTGCGCGGATGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGGTTCAGTTCTGC ]
[+] EMBL BM606237 [ ccgCGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACTACGCGACGCGCGAAGAGAACAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGG ]
[+] EMBL BX607754 [ GCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGTAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATTACAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACGACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACGGGCTTTTTAAGGATATGTTACATGCACGGTGGTGCGCGGTTGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGTTTCAGTTCTGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGTTGGTAGGATTACACAAACACATAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACGCACACACACACACAC]
consensusID : consensus_7369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CCGACCACACCGTCCACCGATATCTCGCCGCCGTCGGCCACCTCCATGCTGCAGTCGCCCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGCCGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACAACCACCAGCACCGCCGGCAACACGACCAGCAGTTCCGCGACGGAAAAGATCCACTCGATGACGGCGGACGAGCTGTGGCAGCATTACGACGCGACGCGTGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGAAGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGACGAACAACCGTCGGCAAAGGAGAAAAATAACGAACCGAACACGTACCCAAAAGTGAAAACTTAATCAAAA]
[+] EMBL BM643352 [CCGACCACACCGTCCACCGATATCTCGCCGCCGTCGGCCACCTCCATGCTGCAGTCGCCCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGCCGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACAACCACCAGCACCGCCGGCAACACGACCAGCAGTTCCGCGACGGAAAAGATCCACTCGATGACGGCGGACGAGCTGTGGCAGCATTACGACGCGACGCGTGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGAAGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGACGAACAACCGTCGGCAAAGGAGAAAAATAACGAACCGAACACGTACCCAAAAGTGAAAACTTAATCAAAA]
consensusID : consensus_7369#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[CCGCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACGGGCTTTTTAAGGATATTACATGCACGGTGGTGCGCGGTTGTTACAGCTTGTGCTTTTCGTTTTCGTTTTGCTGATCGTTTCAGTTCTGCTTCTTCTTCTTTCTGCCTAACACTAGCGGGAGCGGTTGCTACACCAGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGGTAGTAGGATTACACAAACACAAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACACACACACATACACTCACATATATACACAAGCAAACCGATGGTTGGCAAACAATTAGACTGCTGCTGTTGTTGGTTTTAAACACAATATTATGTTATTTTCATCGGTTCGTTAGTTTTTCCGTAAGTTTGGAATG]
[+] EMBL BM601975 [CCGCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACGGGCTTTTTAAGGATATTACATGCACGGTGGTGCGCGGTTGTTACAGCTTGTGCTTTTCGTTTTCGTTTTGCTGATCGTTTCAGTTCTGCTTCTTCTTCTTTCTGCCTAACACTAGCGGGAGCGGTTGCTACACCAGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGGTAGTAGGATTACACAAACACAAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACACACACACATACACTCACATATATACACAAGCAAACCGATGGTTGGCAAACAATTAGACTGCTGCTGTTGTTGGTTTTAAACACAATATTATGTTATTTTCATCGGTTCGTTAGTTTTTCCGTAAGTTTGGAATG]
consensusID : consensus_7369#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[GAATGCCCCGAGGGTNAGAAACGACGGCACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGCAGCGCCTGGGTGCTGCGGCTCGTGCGGGCATTTGAACGCATGCCGGGCCGGTTT]
[+] EMBL AL934784 [GAATGCCCCGAGGGTNAGAAACGACGGCACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGCAGCGCCTGGGTGCTGCGGCTCGTGCGGGCATTTGAACGCATGCCGGGCCGGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7369#1 CCGACCACACCGTCCACCGATATCTCGCCGCCGTCGGCCACCTCCATGCTGCAGTCGCCC 60
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 --------------------------------------------------------CCGC 4
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGCCG 120
consensus_7369#3 ----------------------------------------------------GAATGCC- 7
consensus_7369#0 ACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGGCG 64
consensus_7369#2 ------------------CCGCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACG 42
*
consensus_7369#1 GCGG--CAGACGATTCCGAAGAAACGACGGCAA-CGACGAACACAAC----CACCAGCAC 173
consensus_7369#3 ------CCGAGGGTN----AGAAACGACGGCA--CGACGAACAC-------CACCAGCAC 48
consensus_7369#0 G-----CAGACGATTCCGAAGAAACGACGGCAA-CGACGAACAC-------CACCAGCAC 111
consensus_7369#2 GGCTTTTTAAGGATATTACATGCACGGTGGTGCGCGGTTGTTACAGCTTGTGCTTTTCGT 102
* * * * *** ** ** ** *
consensus_7369#1 CGCCGGCAACACGACCAG--CAGTTCCGCGACGGAAAAGATCCACTCGATGACGGCGGAC 231
consensus_7369#3 CGCCGGTAACACGACCAG--CAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGAC 106
consensus_7369#0 CGCCGGTAACACGACCAG--CAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGAC 169
consensus_7369#2 TTTCGTTTTGCTGATCGTTTCAGTTCTGCTTCTTCTTCTTTCTGCCTAACACTAGCGGGA 162
** ** * ****** ** * ** * * ** *
consensus_7369#1 G-AGCTGTGGCAGCA-TTACGACGCGACGCGTGAAGAGAAGAAGGAGCTGCGCCGCACGA 289
consensus_7369#3 G-AGCTGTGGCAGCA-TTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGA 164
consensus_7369#0 G-AGCTGTGGCAGCA-TTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGA 227
consensus_7369#2 GCGGTTGCTACACCAGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAG 222
* * ** ** ** ** * * * * * * * * *** *
consensus_7369#1 TCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAA--GATGCTGAAATCGGA 347
consensus_7369#3 TCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAA--GATGCTGAAATCGGA 222
consensus_7369#0 TCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAA--GATGCTGAAATCGGA 285
consensus_7369#2 ATGAGAAGCTAGAATATCGAAG-AAGGCATTGAAAATGCGAAATAGGTAGTAGGATTACA 281
** * * ** * * *** ** *** ** * * * ** *
consensus_7369#1 CCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCT 407
consensus_7369#3 CCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCT 282
consensus_7369#0 CCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCT 345
consensus_7369#2 CAAACACAAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTC 341
* * * * **** ** * * ** **** * * * ** *
consensus_7369#1 GATCGATGCGCT--CTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGG-AGCGCCTGG 464
consensus_7369#3 GATCGATGCGCT--CTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGCAGCGCCTGG 340
consensus_7369#0 GATCGATGCGCT--CTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGG-AGCGCCTGG 402
consensus_7369#2 AACACACACACATACACTCACATATATACACAAGCAAACCGATGGTTGGCAAACAATTAG 401
* * * * * * * * * * ***** * * ** * * * *
consensus_7369#1 GTGCTGCGG-TCGTGCGGG-ATTTGAACG--ATGCCGGGCCGGTTTTGGTATTATTGTTT 520
consensus_7369#3 GTGCTGCGGCTCGTGCGGGCATTTGAACGC-ATGCCGGGCCGGTTT-------------- 385
consensus_7369#0 GTGCTGCGG-TCGTGCGGG-ATTTGAACG--ATGCCGGGCCGGTTTTGGTATTATTGTTT 458
consensus_7369#2 A--CTGCTGCTGTTGTTGG-TTTTAAACACAATATTATGTTATTTTC------ATCGGTT 452
**** * * ** ** *** *** ** * ***
consensus_7369#1 TGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGAAGATCATAAC 580
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 TGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAAC 518
consensus_7369#2 CGTTAGTTTTTCCGTAAGTTTGGAATG--------------------------------- 479
consensus_7369#1 ACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGACGAACAACC--------- 631
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 ACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAA 578
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ----GTCGGCAAAGGAGAAAAATAACGAACCGAACACGTACCCAAAAGTGAAAACTTAAT 687
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 AACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAAT 638
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 CAAAA------------------------------------------------------- 692
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 CAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGGGCTTTTTAAGGATATATTAC 698
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ------------------------------------------------------------
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 ATGCACGGTGGTGCGCGGATGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGGT 758
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ------------------------------------------------------------
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 TCAGTTCTGCTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAA 818
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ------------------------------------------------------------
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 GCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGTTGGTAGGATTACACAAACACA 878
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ------------------------------------------------------------
consensus_7369#3 ------------------------------------------------------------
consensus_7369#0 TAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACGCAC 938
consensus_7369#2 ------------------------------------------------------------
consensus_7369#1 ------------
consensus_7369#3 ------------
consensus_7369#0 ACACACACACAC 950
consensus_7369#2 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||