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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1612 fasta sequence
[CCATGCCACCGCCGTCGTCCAATCCGACGAATCCGTTCACTGGCGCCGCCACCGAGAGCACGGGGCTGAACACGGGCAATCAACCAATCTACACGCCAGGCCACTAAAATGCATCTCGATTTGGAATTCGATAACCAGCTTCTGCTATTACAAAAACGTTACACACAAAAAAGCAAAACAAAAACAAAACAAAAAACAATAAGAATATGGTATGAAGTGAGCGTATTATTCGTCGCCATCAATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGCGCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCATCCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAATATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGCATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATCCGTACATAAGCAACGGGCAGCAGAGGAGCGAAGAAACAAAACTATCTTTTTAGGGTATATTTATACGTTTAAGTAATGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGACACGCGCTCAAGTCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCACAATCACACACACCATTAACGTTATCGCACTCATTTGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGCAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGCACACACACACAGGGGGACGGTGCACCACGCGGAGACAGTGACGGAACAGTTCATTATTATAATCCGGTGTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTTATGTTGTGTGAGTGTGTG-TGTGTGTATCTAGGGGTACAACGTGCATGCCCTCCTCTCCTGCATATGCCACAACACTGTGCAGATAGTTATTGTACTGTACGAACGACCGTAGAACGAGATGATGTATGATGATGATGAAGACAAAGAGTAAAAGATGCA]
[+] EMBL BX607225 [CCATGCCACCGCCGTCGTCCAATCCGACGAATCCGTTCACTGGCGCCGCCACCGAGAGCACGGGGCTGAACACGGGCAATCAACCAATCTACACGCCAGGCCACTAAAATGCATCTCGATTTGGAATTCGATAACCAGCTTCTGCTATTACAAAAACGTTACACACAAAAAAGCAAAACAAAAACAAAACAAAAAACAATAAGAATATGGTATGAAGTGAGCGTATTATTCGTCGCCATCAATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGCGCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCATCCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAATATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGCATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATCCGTACATAAGCAACGGGCAGCAGAGGAGCGAAGAAACAAAAC ]
[+] EMBL BX624693 [ GCGTATTATTCGTCGCCATCAATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGCGCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCATCCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAATATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGCATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATCCGTACATAAGCAAGGGGCAGCAGAGGAGCGAAGAAACAAAAGTATCTTTTTAGGGTATATTTATACGTTTAAGTAATGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATG TGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAA AGGAAG ACCAAATC AAACCATTTAAGAAGCTAACAATAATACTTT ]
[+] EMBL CNS08MAI [ TGGCAAATAACAACAGTTAGTAGAAG CCCCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGACACGCGCTCAAGTCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCACAATCACACACACCATTAACGTTATCGCACTCATTTGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAA ]
[+] EMBL CNS08YGL [ AATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAAAAAAAACCTTTTCGGTGACACGCGCTCAAGTCGTCAAACAGGCAACAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCACAATCACACACACCATTAACGTTATCGCACTCATATGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGCAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGCACACACACACAGGGGGACGGTGCACCACGCGGAGACAGTTACGGAACAGTTCATTATTATAATCCGGTGTCACATCCCGTA GACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTCATGTTGTGTGAGTGTGTG TGTGTGTATCTAGGGGTACAACGTGCATGCCCTCCTCTCCTGCATATGCCACAACACTGTGCAGATAGTTATTGTACTGTACGAACGACCGTAGAACGAGATGATGTATGATGATGATGAAGACAAAG ]
[-] EMBL CNS08YGM [ CCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGAAACGCGCTCAAGTCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAAAAAACACACTAACAGAGAGCCACAATTACACACACCATTAACGTTATCGCACTCATTTGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGGACACACACACAGGGGGACGGTGCACCACGCGGAGACAGTGATTTTTTATTTTATTATTATAATCCGGTGTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTTATGTTGTGTGAGTGTGTG TGTGTGTATCTAGGGGTACAACGTGCATGCCCTCCTCTCCTGCATATGCCACACCACTGTGCAGATAGTTATTGTACTGTACGAACGACCGTAGGACGAGATGATGTATGATGATGATGAAGACAAAGAGTAAAAGATGCA]
[-] EMBL CNS08MAJ [ GGGACGGTGCACCACGCGGAGACAGTGACGGAACAGTTCATTATTATAATCCGATGTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTTATGTTGTGTGAGTGTGTGATATGTGTATCTAag ]
consensusID : consensus_7383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAAAAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCATTTCGGTGACACGCGCTCAAGTAAAACAGTAAACATTAACAGAGAGCCACAATCACACACAGCATTAACGTTATCGCAACTCATTTGGAAGACTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAG]
[+] EMBL BM590122 [CCGGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAAAAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCATTTCGGTGACACGCGCTCAAGTAAAACAGTAAACATTAACAGAGAGCCACAATCACACACAGCATTAACGTTATCGCAACTCATTTGGAAGACTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7383#0 CCATGCCACCGCCGTCGTCCAATCCGACGAATCCGTTCACTGGCGCCGCCACCGAGAGCA 60
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 CGGGGCTGAACACGGGCAATCAACCAATCTACACGCCAGGCCACTAAAATGCATCTCGAT 120
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 TTGGAATTCGATAACCAGCTTCTGCTATTACAAAAACGTTACACACAAAAAAGCAAAACA 180
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 AAAACAAAACAAAAAACAATAAGAATATGGTATGAAGTGAGCGTATTATTCGTCGCCATC 240
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 AATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGC 300
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 GCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCAT 360
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 CCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAAT 420
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 ATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGC 480
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 ATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATC 540
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 CGTACATAAGCAACGGGCAGCAGAGGAGCGAAGAAACAAAACTATCTTTTTAGGGTATAT 600
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 TTATACGTTTAAGTAATGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCA 660
consensus_7383#1 --------------CCGGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCA 46
*******************************************
consensus_7383#0 TATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTG 720
consensus_7383#1 TATATGT--GTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTG 104
******* ***************************************************
consensus_7383#0 GATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAA 780
consensus_7383#1 GATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAAAAGGAAGAA 164
************************ ************************ ********
consensus_7383#0 CAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGC 840
consensus_7383#1 CAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGC 224
************************************************************
consensus_7383#0 TAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGACACGCGCTCAAG 900
consensus_7383#1 TAGTATCCGTATGCTCTACATACTACTAAATCCCATCCATTTCGGTGACACGCGCTCAAG 284
************************************** *********************
consensus_7383#0 TCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCAC 960
consensus_7383#1 TA---AAACAG----------------------------TAAACATTAACAGAGAGCCAC 313
* ****** * *** **************
consensus_7383#0 AATCACACACACCATTAACGTTATCGCA-CTCATTTGGAAGAGTCCATAAATTAGCGAAT 1019
consensus_7383#1 AATCACACACAGCATTAACGTTATCGCAACTCATTTGGAAGACTCCATAAATTAGCGAAT 373
*********** **************** ************* *****************
consensus_7383#0 GTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCG 1079
consensus_7383#1 GTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCG 433
************************************************************
consensus_7383#0 TAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATAT 1139
consensus_7383#1 TAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATAT 493
************************************************************
consensus_7383#0 ATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGCAACGTGTTT 1199
consensus_7383#1 ATA--CATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTT 551
*** ********************************************* *********
consensus_7383#0 CCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGT 1259
consensus_7383#1 CCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGT 611
************************************************************
consensus_7383#0 GTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGCACACACAC 1319
consensus_7383#1 GTGAAACCCGTTATGCATATTACGATACTAAG---------------------------- 643
********************************
consensus_7383#0 ACAGGGGGACGGTGCACCACGCGGAGACAGTGACGGAACAGTTCATTATTATAATCCGGT 1379
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 GTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAAT 1439
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 TAATTGCGCAAGTTATGTTGTGTGAGTGTGTGTGTGTGTATCTAGGGGTACAACGTGCAT 1499
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 GCCCTCCTCTCCTGCATATGCCACAACACTGTGCAGATAGTTATTGTACTGTACGAACGA 1559
consensus_7383#1 ------------------------------------------------------------
consensus_7383#0 CCGTAGAACGAGATGATGTATGATGATGATGAAGACAAAGAGTAAAAGATGCA 1612
consensus_7383#1 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||