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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1463 fasta sequence
[CACAGTTTCAATGATACAAGTTTGCATTTATTTGACTAATCGAAATATCTTTCCGACACGATGACATACAAGTTTTACCTGGCTTTATGCTAAAGTCACATTTCATTGGAATATTTTGCGAATTACGCCAAAGTCCTTGACATGTTCGTGCGTGTATCTGCATCTCCCATACTACTTACAATAAAACACATTTATAATATTCCAAACATGTTGGTTCTACTGGGTTCAAACATTTAACTACCGTATCGCAGCAGCGTGAATTTATCCTCCTGGAACTCATCCTGGTCGATCGACCAGATCATTGCTCCGCCAAGACCTTCGCTGTTGATGAATTCACATTTCTTTTGAATACTTTGCGGATTATCGTAGCTAACCCACTGATCGCCGCTAACCGCATAAGGAACGTGCTGCTCGCTATC-CCACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATGCCTGCTTCATCTGTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTGGAGGTCAGTGTGAACGTACGTCCAT-TTTCGGCTAAGCGCGACGATCAGTTTCGACTTTGGGGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTCGGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGC-GTCCCACTTGCCGTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTTTTTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCACATTGACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAA-AGTAATGAGTACGAGTGCTTTGACTCCTCAACTGATACTGACTACGTTCGTCGACGCTGATTGTTCGTTCTAGTAAGACACGTAATCCAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTACGAGCTCTTTGCGGACGCGTGGGCGG]
[+] EMBL CNS08U5V [CACAGTTTCAATGATACAAGTTTGCATTTATTTGACTAATCGAAATATCTTTCCGACACGATGACATACAAGTTTTACCTGGCTTTATGCTAAAGTCACATTTCATTGGAATATTTTGCGAATTACGCCAAAGTCCTTGACATGTTCGTGCGTGTATCTGCATCTCCCATACTACTTACAATAAAACACATTTATAATATTCCAAACATGTTGGTTCTACTGGGTTCAAACATTTAACTACCGTATCGCAGCAGCGTGAATTTATCCTCCTGGAACTCATCCTGGTCGATCGACCAGATCATTGCTCCGCCAAGACCTTCGCTGTTGATGAATTCACATTTCTTTTGAATACTTTGCGGATTATCGTAGCTAACCCACTGATCGCCGCTAACCGCATAAGGAACGTGCTGCTCGCTATC CCACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATGCCTGCTTCATCTGTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTGGAGGTCAGTGTGAACGTACGTCCAT TTTCGGCTAAGCGCGACGATCAGTTTCGACTTTGGGGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTCGGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGC GTCCCACTTGCCGTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTTTTTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCA ]
[-] EMBL CNS08U5U [ TCGCTATCTCTACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATTCCTGCTTCATCTGTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTGGAGGTCAGTGTGAACGTACGTCCATAAAGCGGCTAAGC CGACGATCAGTTTCGACTTTGGGGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTCGGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGCGGTCCCACGTGCCGTTGTTATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGAAAAATCGTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCACATTGACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGATCAGTAAGAGTAATGAGTAC ]
[-] EMBL BX604521 [ CCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAGCCATACTGTATACAGAAGCCACGCACATTGACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGC ]
[-] EMBL BM616024 [ ccaAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGCATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAA AGTAATGAGTACGAGTGCTTTGACTCCTCAACTGATACTGACTACGTTCGTCGACGCTGATTGTTCGTTCTAGTAAGACACGTAATCCAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTACGAGCTCTTTGCGGACGCGTGGGCGG]
[-] EMBL AL696355 [ tcGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCNTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCC GGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAA AGTAATGAGTACGAGTGCTTTGACTCCTCAACTGATACTGAGTACGTTCGTCGACGGTAATTGTTCGTTCTAGTAAGACACGTAATCTAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTTNCACCTCTgcgatc ]
consensusID : consensus_7398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence
[GGCCAGTGTAGCAGTCCCACGTGCCGTTGTAATCGTAGCTCATCAGGAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTACTCTTTGTTAACACCCACCGATGTGGTTAAGATCAGGTCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGTATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACGCAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGCTGTCCATAACATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAATAAAGTAATGAGTACGAGTGCTTTGACCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM589524 [GGCCAGTGTAGCAGTCCCACGTGCCGTTGTAATCGTAGCTCATCAGGAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTACTCTTTGTTAACACCCACCGATGTGGTTAAGATCAGGTCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGTATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACGCAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGCTGTCCATAACATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAATAAAGTAATGAGTACGAGTGCTTTGACCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM625521 [ GTGCCGTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTACTCTCTGTTAACACCCACCGATGTAGTTAAGATCAGGTCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGCATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAAAGTAATGAGTACGAGTGCTTTGACCGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7398#0 CACAGTTTCAATGATACAAGTTTGCATTTATTTGACTAATCGAAATATCTTTCCGACACG 60
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 ATGACATACAAGTTTTACCTGGCTTTATGCTAAAGTCACATTTCATTGGAATATTTTGCG 120
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 AATTACGCCAAAGTCCTTGACATGTTCGTGCGTGTATCTGCATCTCCCATACTACTTACA 180
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 ATAAAACACATTTATAATATTCCAAACATGTTGGTTCTACTGGGTTCAAACATTTAACTA 240
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 CCGTATCGCAGCAGCGTGAATTTATCCTCCTGGAACTCATCCTGGTCGATCGACCAGATC 300
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 ATTGCTCCGCCAAGACCTTCGCTGTTGATGAATTCACATTTCTTTTGAATACTTTGCGGA 360
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 TTATCGTAGCTAACCCACTGATCGCCGCTAACCGCATAAGGAACGTGCTGCTCGCTATCC 420
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 CACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATGCCTGCTTCATCT 480
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 GTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTG 540
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 GAGGTCAGTGTGAACGTACGTCCATTTTCGGCTAAGCGCGACGATCAGTTTCGACTTTGG 600
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 GGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTC 660
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 GGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGC-GTCCCACTTGCC 719
consensus_7398#1 -----------------------------------GGCCAGTGTAGCAGTCCCACGTGCC 25
************ ******* ****
consensus_7398#0 GTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATC 779
consensus_7398#1 GTTGTAATCGTAGCTCATCAGGAGGATATAGTCAACATGTCGGGCAATTCCGGATACATC 85
********* *********** **************************************
consensus_7398#0 GTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTTTTTAGCTCAGA 839
consensus_7398#1 GTACTCTTTGTTAACACCCACCGATGTGGTTAAGATCAGGTCGTGACTGTGTAGCTCAGA 145
*** *** ******************************* ******** * *********
consensus_7398#0 TGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTC 899
consensus_7398#1 TGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTC 205
************************************************************
consensus_7398#0 CCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCACATTGACTGC 959
consensus_7398#1 CCAATCAATATCCGCTCCATTGAAACCATACCGTATACAGAAGCCACGCACATTTACTGC 265
******************************* ********************** *****
consensus_7398#0 AAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATT 1019
consensus_7398#1 AAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACGCAGATTTATCACAATT 325
******************************************* * **************
consensus_7398#0 GGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAA 1079
consensus_7398#1 GGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAA 385
************************************************************
consensus_7398#0 GTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGG 1139
consensus_7398#1 GCTGTCCATAACATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGG 445
* * ****** *************************************************
consensus_7398#0 CTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCA 1199
consensus_7398#1 CTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCA 505
************ *********************************** ***********
consensus_7398#0 TCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCT 1259
consensus_7398#1 TCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCT 565
************************************************************
consensus_7398#0 CGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAAAGTAATGAGT 1319
consensus_7398#1 CGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAATAAAGTAATGAGT 625
************* ******************************** *************
consensus_7398#0 ACGAGTGCTTTGACTCCTCAACTGATACTGACTACGTTCGTCGACGCTGATTGTTCGTTC 1379
consensus_7398#1 ACGAGTGCTTTGACCGGACGCGTGG-GCGGAC-GCGTGGGCGG----------------- 666
************** * ** * *** *** * *
consensus_7398#0 TAGTAAGACACGTAATCCAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTACG 1439
consensus_7398#1 ------------------------------------------------------------
consensus_7398#0 AGCTCTTTGCGGACGCGTGGGCGG 1463
consensus_7398#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||