These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1132 fasta sequence [GAATCGCCCGAGGTNAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCA-GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCCGAAAGTACGATACATCTGCGACGTCTGTCGAAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATGTCGCACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGTTGCAAGGATACTTTTGATACGGAGGATGCTTTTC-GGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACACGAACGGTGTAC-GGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGATCTAAAGGTACATCGCCGCACGCACACCAAAGAGAAGCCG-TTCCGATGTAATCTCTGCCCGGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCAAAGGTTCACGGAATAGAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAAAAAAAACCTCACGTGTAGCATGCTAAGCAGGAATAGAATGACCCATAATCGTACTGGAATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAATCATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACATCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AL693520 [GAATCGCCCGAGGTNAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACAATTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGGTGCAGCGTGTGCGAATTGTGTTTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGCTCGAAGAACCAGCCTCCGAAAGTACGCTACATCTGCGACGTCTGTCGAAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATGTCGCACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGTTGCAAGGATACTTTTGATACGGAGGATGCTTTTC GGCAGCATCTAAAGAC ] [+] EMBL CNS08CRB [ TGCGGGGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATTCTCA GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGCTGAACCAGTCTCCGAAAGCACGATACACCTGCGACGTCTGTCGGAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATGTCGCACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGATGCAAGGATACGTTTGAGACGGAGGATGCTTTTC GGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACACGAACGGTGTAC GGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGATCTAAAGGTACATCGCCGCACGCACACCAAAGAGAAGCCG TTCCGATGTAATCTCTGCCCGGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCAAAGGTTCACGGAATAGAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAAAAAAAACCTCACGTGTAGCATGCTAAGCAGGAATAGAATGACCCATAATCGTACTGGAATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAATCATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACATCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM585431 [ ccGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCA GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCTGAAAGCACGATACATCTGCGACGTCTGTCGAAAAGAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCTTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATATCGAACGCATGCATACGCACGAAAAGAAGTTCCACTGCGCACAGTGCGGTGAATCGTTTATCTACGCACGACAGCTACACACCCATCGGGAACGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAGATGCGCTCGTTGCAAGCATACTTTTGATACGGAGGATGCTTTTC GGCAGCACCTAAAGAAGAATGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACACGAACGGTGTACGGGGCACACGGTTGTGAGCACTGTTCGAAGCGATTTACACTTCCCGGCGATCTAAAGGTACATC ] [-] EMBL CNS08CRC [ ATGGCATCGGGACTACCATCGATCGCTGAACCAGTCTCCGTTTTTACGATACACCTGCCACCTCTGTCGGAAAAAATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGGGCACAAACCGTACCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGGCAACCGGCAGAAACATTTCGCACGCATGCAAACGCACGAAAAGAAGTTCCACTGCGCACAATGCGGTGAATCGTTTATCTACGCACCACAGCTAAACACCCATCGGGAGCGGAAACACGCAGAACATACCAAGAATACCAACGGTCTTTTCAAATGCGCTCGATGCAAGGATACGTTTGAGACGGAGGATGCTTTTCGGGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTTTGTGCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACAATCTGCTTACTCACACGAACGGTGTAC GGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGATCTAAAGGTACATCGCCGCACGCACACCAAAGAGAAGCCGCTTCCGATGTAATCTCTGCCCCGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCAAAGGTTCACGGAATAGAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAAATCAAACCTCACGTGTAGCATGCTAAGCAGGAATAGAATGACCCATAATCGTACTGGAATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAATCATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACAT ] [+] EMBL BX608318 [ GTGGTGAGCACTGTTCGAAGCGATTTACACTTCCCGGCGATCTAAAGGGACATCGCCGCACGCACACCAAAGAGAAGCCG TTCCGATGTAA ] consensusID : consensus_7420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 788 fasta sequence [CCGCCTCAGAAGATGGATAAATCCTACAGACGCGTCAACAAAAGAACATAAAAATGTGTCCACCAGAGATCGCTTCTACTGCACATCCCGCAACAGCGCGTTAATCGCCGAATAACGACCACAAAGCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATCATTATGCCGCCAGTCCTCGTCGAACCGTAGCCACTGGTTGGTGGCAGGATGTGTGCCGCCGGTCCGTGTTTCGATTGGTACGCCGATGCGGAGGGCGATGTGTGTGATATGTTGCCGCTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGATGCGGGTGAGTTTCTACCGCCTGCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTACGGCGATCATCGTCAGCTGTTTGCGGAGATTAGCGAAGAAAGCGGCGAGCCCCAATCGCACGAAGAAACGGCAGTTTCGTTGGAAAGTGTTTTAACTTGCAACGGGTGTAACGTGCGGTTTCAATGCAAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCCGCAGTGTGGGGAACAATTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCTGAAAGCACGATACATCTGCG] [+] EMBL BM628336 [CCGCCTCAGAAGATGGATAAATCCTACAGACGCGTCAACAAAAGAACATAAAAATGTGTCCACCAGAGATCGCTTCTACTGCACATCCCGCAACAGCGCGTTAATCGCCGAATAACGACCACAAAGCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATCATTATGCCGCCAGTCCTCGTCGAACCGTAGCCACTGGTTGGTGGCAGGATGTGTGCCGCCGGTCCGTGTTTCGATTGGTACGCCGATGCGGAGGGCGATGTGTGTGATATGTTGCCGCTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGATGCGGGTGAGTTTCTACCGCCTGCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTACGGCGATCATCGTCAGCTGTTTGCGGAGATTAGCGAAGAAAGCGGCGAGCCCCAATCGCACGAAGAAACGGCAGTTTCGTTGGAAAGTGTTTTAACTTGCAACGGGTGTAACGTGCGGTTTCAATGCAAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCCGCAGTGTGGGGAACAATTCCCA ] [+] EMBL BX602020 [ TTCTACTGCACATCCCGCAACAGCGGGTTAATCGCCGAATAACGACCACAAAGCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATCATTATGCCGCCAGTCCTCGTCGAACCGTAGCCGCTGGTTGGTGGCAGGATGTGTGCCGCCGGTCCGTGTTTCGATTGGTACGCCGATGCGGAGGGCGATGTGTGTGATATGTTGCCGTTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGAGGCGGGTGAGTTTCTATCGCCTTCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTACGGCGATCATCGTCAGCTGTTTGCGGAGATTAGCGAAGAAAGCGGTGAGCCCCAATCGCACGAAGAAA CGTTGGAAAGTGTTTTAACTTGCAACGGGTGTAACGTGCGCTTTCAATGCAAAACACACCGCACAAGGCATCAGCTTTTGCATCAC GGGGATGAGTTATCCAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACATTTCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCCTCTGAAAGCACGATACATCTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7420#0 GAATCGCCCGAGGTNAAACACACCACACAAGGCATCAGCTTTTGCATCACGGGGATGCGT 60 consensus_7420#1 ------------------------------------------------------------ consensus_7420#0 TAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCGGCAGTGTGGGGAACATT 120 consensus_7420#1 ------------------------------------------------------------ consensus_7420#0 TCCCATTGGCACGGCAGCTCGCAGATCATCTTGCAGCCCAACATCCTCAGTGCAGCGTGT 180 consensus_7420#1 ------------------------------------------------------------ consensus_7420#0 GCGAATTGTGTCTAGCAACATTCCGTGATCGTGCCTCACTCGAATGGCATCGGAACTACC 240 consensus_7420#1 ------------------------------------------------------------ consensus_7420#0 ATCGATCGAAGAACCAGCCTCCGAAAGTACGATACATCTGCGACGTCTGTCGA--AAAGA 298 consensus_7420#1 --------------CCGCCTCAGAAGATG-GATAAATCCTACAGACGCGTCAACAAAAGA 45 * ***** *** * **** *** * *** * ***** consensus_7420#0 ATGCAACAGTTCGAGTCATCTGCATCTACATCGGAAGATTCATCTGGAGCACAAACCGTA 358 consensus_7420#1 ACATAAAAATGTGT-CCACCAGAGATCGCTTCTACTGCACATCCCGCAACAGCGCGTTAA 104 * ** * * * ** * * * ** * * * * ** * consensus_7420#0 CCCCTGTACGTATGGCTGTAATCGTAGCTTCTCCTCGTCCGG----CAACCGGCAGAAAC 414 consensus_7420#1 TCGCCGAATA-ACGACCACAAA-GCAGAGGACGATGGTGTGAACCTCAAACGTGTCGATC 162 * * * * * * * ** * ** * ** * *** ** * * consensus_7420#0 ATGTCGCACGCATGCATACGCACGAAAAGAAGTT-CCACTGCGCACAATGCGGTGAATCG 473 consensus_7420#1 ATTATGC-CGCCAGTCCTCGT-CGAACCGTAGCCACTGGTTGGTGGCAGGATGTGTGCCG 220 ** ** *** * ** **** * ** * * * * * *** ** consensus_7420#0 TTTATCTACGCACGACAGCTACACACCCATCGGGAGCGGAAACACGCAGAACATACCAAG 533 consensus_7420#1 CCGGTCCGTGTTTCG-ATTGGTACGCCGATGCGGAG-GGCGATGTGTGTGATATGTTGCC 278 ** * * ** ** ** **** ** * * * ** consensus_7420#0 AATACCAACGGTCTTTTCAGATGCGCTCGTTGC----AAGGATACTTTTGATACGGAGGA 589 consensus_7420#1 GCTGATCACGGTCAACGATAATAGCGTTATCGCCACGGAGGTCACCTTTGATGCGGGTGA 338 * ****** ** * * ** *** ** ****** *** ** consensus_7420#0 TGCTTTTCGGCAGCATCTAAAGACGAGTGGCTGCCTAGAGCTTCGTGCGTTTGAGTGTGT 649 consensus_7420#1 -GTTTCT----ACCGCCTGCCGGCGAGGAATTACCGTACGCGACGGACTTTGCCCTGTAC 393 * ** * * * ** * **** * ** ** ** * ** *** consensus_7420#0 GCTGTGCGCAAAACGCTTCAAGCAAAGCACCCATCTGCGCAACCATCTGCTCACTCACAC 709 consensus_7420#1 GGCGATCATCGTCAGCTGTTTGCGGAG-----ATTAGCGAAGAAAGCGGCGAGCCCCAAT 448 * * * *** ** ** ** *** * * * ** * * * consensus_7420#0 GAACGGTGTACGGGCACACGGTTGTGAGCACTGTTAGAAGCGATTTACACTCCCCGGCGA 769 consensus_7420#1 ------CGCACGAAGAAACGGC----AGTTTCGTTGGAAAGTGTTTTAACTTGCAACGGG 498 * *** * **** ** *** *** *** *** * * consensus_7420#0 TCTAAAGGTACATCGCCGCACGCA-CACCAAAGAGAAGCCGTTCCGATGTAATCTCTGCC 828 consensus_7420#1 TGTAACGTGCGGTTTCAATGCAAAACACACCACACAAGGCAT-CAGCTTTTGCATCACGG 557 * *** * * * * * *** * * *** * * * * * * ** consensus_7420#0 CGGCTGGGTTCATTGTGGGCAAGCAATTAAATAAGCATCGTGCA-AAGGTTCACGGAATA 887 consensus_7420#1 GGGATGCGTTAGCTAGCACCAAGCAGTTCGCCAAATGCCGGATTCGATGTCCGCAGTGTG 617 ** ** *** * ****** ** ** ** * ** * * * * consensus_7420#0 GAGAGCACGCGTAAGGGATGAGGATAAGCGAGGAATTGGTCATAAACAGAAGACAATAAA 947 consensus_7420#1 GGGAACAATTCCCATTGGCACGG--CAGCTCGCAGATCATCTT-----GCAGCCCA---- 666 * ** ** * * ** *** * * * ** * * ** * * consensus_7420#0 AAAAAACCTCACGTGTAGCATG--CTAAGCAGGAATAG-AATGACCCATAATCGTACTGG 1004 consensus_7420#1 --ACATCCTCA-GTGCAGCGTGTGCGAATTGTGTCTAGCAACATTCCGTGATCGTGCC-- 721 * * ***** *** *** ** * ** * *** ** ** * ***** * consensus_7420#0 AATTACAGTTACAGTTACAAACGCGCCGTCAATTAAATTCAAAGCAATATGACAATAAAT 1064 consensus_7420#1 --TCACTCGAATGGCATCGGAACTACCATCGATCGAAGAACCAGCC-TCTGAAAGCACGA 778 * ** * * * * ** ** ** ** *** * *** * * consensus_7420#0 CATGAATGTAGTTGAGCCACGTGATTGTATGATCACAATGTACATCAAAAAAAAAAAAAA 1124 consensus_7420#1 TACATCTGCG-------------------------------------------------- 788 * ** consensus_7420#0 AAAAAAAA 1132 consensus_7420#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||