cluster # 7428

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7428 cluster # 7428 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7428#0 length = 810 sequences # 5

consensus_7428#1 length = 533 sequences # 2

consensusID : consensus_7428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 810
fasta sequence

                              [CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC-GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA-CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA-CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAG-ACAGAGTGTTGTTTTGAATTCGAACGAAA]

[+] EMBL BX624593             [CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTANGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAG ACAGAGTGTTGTTTTGAATTCGAACGAAA]
[-] EMBL CNS08P56             [           tATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGG TTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTA                                                                                                                                                        ]
[-] EMBL CNS08V8V             [                                                                                                                                                                                                                       GGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTCTGTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAACCGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCACCGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAGAACAGA                        ]
[+] EMBL BX615278             [                                                                                                                                                                                                                                                                                   CTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACTTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGTAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAAGAACAGAGTGTTGTTTTGA            ]
[+] EMBL BX618696             [                                                                                                                                                                                                                                                                                   CTCTTCGGGCTCAAGCTCTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTC GTGATGGGTTGGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAA CGCGACCGGCTGGAAGCACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCA CGCAACCGTTCGATGAGGCCTAGGCGCCGTGTTCAACACACAGCCCCct                                                                                                                             ]




>consensus_7428#0
CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCC
GGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGT
TACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCG
AAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATA
ATGGGTGTAACGTTTAAAACCGACGGTAAGTCCTCCTCTTCGGGCTCAAGCTCTAGCAGC
GACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCTCCAATTCA
TCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCCGCGATCAA
GAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACCGAAAGGAG
CGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTCGTGATGGGTTGGTTCGTG
TACTACACGCACCAACAGACGAACGCACAGTTCGAACGCGACCGGCTGGAAGCACTCGAA
CGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCACGCAACCGTTCGATGAGGCCTAG
GCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCAACGATTGT
TAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGTCAACAGAA
GACAGAGTGTTGTTTTGAATTCGAACGAAA

consensusID : consensus_7428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence

                              [CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACAGGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCGGAGCCACAGGAGCTGACGGACATTGTGCGTGAGGCGCTGAAAGATCGTAAGCCCCTTCCTACGTCGAGCGCTGAGGAACCGGCGGCCACGCCAAAGACGAAAGAAGAGGAGGAAGCGGCCAAGACGCGTAGCAGCAATTAGAGTAGCTTAAAGCGGTAACACACAGTTTAGGGAAAGATAA]

[+] EMBL BM602359             [CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACAGGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCGGAGCCACAGGAGCTGACGGACATTGTGCGTGAGGCGCTGAAAGATCGTAAGCCCCTTCCTACGTCGAGCGCTGAGGAACCGGCGGCCACGCCAAAGACGAAAGAAGAGGAGGAAGCGGCCAAGACGCGTAGCAGCAATTAGAGTAGCTTAAAGCGGTAACACACAGTTTAGGGAAAGATAA]
[+] EMBL BX615498             [                        GGACGTGCACACGGACGCGAATATTTCCCTCTCACAGGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAATTACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGTGAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCTTACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGGACAGATAATGGGTGTAACGTTTAA                                                                                                                                                                                                                 ]




>consensus_7428#1
CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACA
GGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAAT
TACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGT
GAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCT
TACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGG
ACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCGGAGCCACA
GGAGCTGACGGACATTGTGCGTGAGGCGCTGAAAGATCGTAAGCCCCTTCCTACGTCGAG
CGCTGAGGAACCGGCGGCCACGCCAAAGACGAAAGAAGAGGAGGAAGCGGCCAAGACGCG
TAGCAGCAATTAGAGTAGCTTAAAGCGGTAACACACAGTTTAGGGAAAGATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7428#0      ------------------------------------------------------------
consensus_7428#1      CCGCTATTTCCGCCGGGACGGTGCGGACGTGCACACGGACGCGAATATTTCCCTCTCACA 60
                                                                                  

consensus_7428#0      -------CTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAAT 53
consensus_7428#1      GGCAATACTCGGTGGCACGATACGCGTGCAGGGTGTGTACGAGGATCAGACGATACAAAT 120
                             *****************************************************

consensus_7428#0      TACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGT 113
consensus_7428#1      TACGCCCGGTACCTCGTCGCACACGCGAATAACGCTCACCGGGAAGGGACTGAAGCGGGT 180
                      ************************************************************

consensus_7428#0      GAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCT 173
consensus_7428#1      GAATAGTTACGGTAGCGGAAATCATTATGTACATTTGAAGATTCAAATTCCAACCAAGCT 240
                      ************************************************************

consensus_7428#0      TACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGG 233
consensus_7428#1      TACACCGAAGCAAAAAGCCCTTATACAGGCTTACGCTGAACTGGAGGACGATACACCCGG 300
                      ************************************************************

consensus_7428#0      ACAGATAATGGGTGTAACGTTTAAAACCGACGGTA-AGTCCTCCTCTTCGGGCTCAAGCT 292
consensus_7428#1      ACAGATAATGGGTGTAACGTTTAAAACCGACGGTGGAAAAGTGTGCTACGCG---GAGCC 357
                      **********************************  *    *   ** ** *    *** 

consensus_7428#0      CTAGCAGCGACTCCTTCACATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCATCCTCCT 352
consensus_7428#1      ---ACAGGAGCTGACGGACATTGT-----GCGTGAGGCGCTGAAAGATCGTAAGCCCCTT 409
                          ***   **     ****  *      * *    * *        * * * ** * *

consensus_7428#0      CCAATTCATCCTCCACCTGGTCCTCATCGAACGTTTCCGACAAGCACACGCAAGGGGCCC 412
consensus_7428#1      CC--TACGTCGAGCGCTGAGGAACCGGCGGCCACG-CCAAAGACGAAAGAAGAGGAGGAA 466
                      **  * * **   * *   *    *  **  *    ** *  *  * *    *** *   

consensus_7428#0      GCGATCAAGAAGGCTACGACACGTACAAACCGCACGATCCGACCGACACACACGAGTACC 472
consensus_7428#1      GCGGCCAAGACGCGTAGCAGCAATTAGAGTAGCTTAAAGCGGT-AACACACA-GTTTAGG 524
                      ***  ***** *  **  *    *   *   **   *  **    ******* *  **  

consensus_7428#0      GAAAGGAGCGGTTCGATTCTCGATTTTACTACGCGCTCGGCGCATTGCTCGTGATGGGTT 532
consensus_7428#1      GAAAGATAA--------------------------------------------------- 533
                      *****                                                       

consensus_7428#0      GGTTCGTGTACTACACGCACCAACAGACGAACGCACAGTTCGAACGCGACCGGCTGGAAG 592
consensus_7428#1      ------------------------------------------------------------
                                                                                  

consensus_7428#0      CACTCGAACGGCAGCGGGTAGCCCGCGGCGGCTACAAGGACGTCACGCAACCGTTCGATG 652
consensus_7428#1      ------------------------------------------------------------
                                                                                  

consensus_7428#0      AGGCCTAGGCGCCGTGTTCAACACACAGCCCCTACTAACTTCCAACCATCCAAGCAAGCA 712
consensus_7428#1      ------------------------------------------------------------
                                                                                  

consensus_7428#0      ACGATTGTTAAGTGGTGCTGTGGTGTAGGGAGTATGCGTTTGTTATTGGTGAAATAGGGT 772
consensus_7428#1      ------------------------------------------------------------
                                                                                  

consensus_7428#0      CAACAGAAGACAGAGTGTTGTTTTGAATTCGAACGAAA 810
consensus_7428#1      --------------------------------------