|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 966 fasta sequence
[TTTACAAAACAAAAGTGCGGCAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAATGCTCGCAGGGAGGAGATTGTATAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCA-GACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCAGCTTAACCGGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGATGAGCGTTTGTTGAAACAACTTAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG]
[+] EMBL CNS092ZO [TTTACAAAACAAAAGTGCGGCAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAATGCTCGCAGGGAGGAGATTGTATAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCA GACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGCGGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCACTTTAACCGGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGATGAGCGTTTGTTGAAACAACTTAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG]
[+] EMBL CNS09QRS [ TAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAGTGCTCGCAGGGAGGAGATTGTACAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCA GACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCA CTTAACCGGCATCGACGACAGTATTTGAACTACGT TTTATGCACACGAACGTCAGCGCGGATATTAGCAAAATACCGGCCATCTTTGTA ]
[-] EMBL CNS09QRT [ CAAGCCGAAAAAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGAACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAGTGCTCGCAGGGAGGAGATTGTACAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCAGGACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGGAG TGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACC ]
[-] EMBL CNS092ZP [ acaaaAAAGGGCTGGAAAATTACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGAACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAATTACATTAAGGGCTATCGGTACGAAATCTTCTGCATGAGCAAAAACGCCCGTACGACCCAGTGCACGGTACACTGTGCCATGACGGTTGAGCAGCGAAATGCTCGCAGGGAGGAGATTGTATAGAGTTCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAACCGCAGGACACGAGCCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGATGG GGTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGGCCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGCAGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGATACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCAGCTTAACCGGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGATGAGCGTTTaat ]
[+] EMBL BX614727 [ GGAAGTCCCAGCGAACATGAGCGTGGCGCAGCTGAACCGGCATCGGCGAAAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTAGCAAAATACCGGCCATCTT ]
consensusID : consensus_7503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[TGGCCAAGGAATTGCCACGACGGTTGAACAGCGCTAACAACTCATCTCTAACTCTCCAGCAAAAATGCTCTTCTCATCGTAATCACCTGGCCTGCCATGCGCAGTGGGAAAACAAGCCGCGCCTAAAGAGCTGGAAAAATTACTTTACCTGAGGCTGGGTAAAGGGCCCGGTGCCACCATCGTGTTCGAAGGTCGGAACTTGCGATCCGCCTCCGAGCTCCCCGCGGGTTGCCGTGGCGTGCAAAGCGGAAGCAGGCCTTTCAACCGGGAACAACGGGGGAAACACAGGGAAACACAAGCAACAATTCCCGGTTGGCCCAAGGCCCTTGAACAACTTCGGGACAGGCCCGNATGAAACTCCTGGCGTCACACCCAAAGGTTACAGAAACCNGACTTGGGTACCAATCAACTTGGNACCCGGGGTACNANCTCGACACATTTTACCATTTTACAAGGGCGNCTCTTTAAATTCCCGCGAGGCTACGCCAGGANCAACAACTTACCTTTTCCCTTTGGGCAAAATTTGGNAAACGGCCCAGACGAAAAACAACCTNGCCACCCCCCNGGGTGTAACCGGGAAAGNCCAGCAAAAGGAGTTTATGGCCGACACTCGGGCGCNTCAACACCANACCTTGGGGTTGGCACACANATTGGGNAGCANCGTGTGGGTTNTGNGAAACCCCACAGGCTGGCACACAAGACATCTTGGCCTTTTCCCCGNCCCATATGTGCTGNGAAGNGAGGCAACGCAAATTTACTGGGTAACCGCAAAGCCAACANTTTNCA]
[+] EMBL AL696663 [TGGCCAAGGAATTGCCACGACGGTTGAACAGCGCTAACAACTCATCTCTAACTCTCCAGCAAAAATGCTCTTCTCATCGTAATCACCTGGCCTGCCATGCGCAGTGGGAAAACAAGCCGCGCCTAAAGAGCTGGAAAAATTACTTTACCTGAGGCTGGGTAAAGGGCCCGGTGCCACCATCGTGTTCGAAGGTCGGAACTTGCGATCCGCCTCCGAGCTCCCCGCGGGTTGCCGTGGCGTGCAAAGCGGAAGCAGGCCTTTCAACCGGGAACAACGGGGGAAACACAGGGAAACACAAGCAACAATTCCCGGTTGGCCCAAGGCCCTTGAACAACTTCGGGACAGGCCCGNATGAAACTCCTGGCGTCACACCCAAAGGTTACAGAAACCNGACTTGGGTACCAATCAACTTGGNACCCGGGGTACNANCTCGACACATTTTACCATTTTACAAGGGCGNCTCTTTAAATTCCCGCGAGGCTACGCCAGGANCAACAACTTACCTTTTCCCTTTGGGCAAAATTTGGNAAACGGCCCAGACGAAAAACAACCTNGCCACCCCCCNGGGTGTAACCGGGAAAGNCCAGCAAAAGGAGTTTATGGCCGACACTCGGGCGCNTCAACACCANACCTTGGGGTTGGCACACANATTGGGNAGCANCGTGTGGGTTNTGNGAAACCCCACAGGCTGGCACACAAGACATCTTGGCCTTTTCCCCGNCCCATATGTGCTGNGAAGNGAGGCAACGCAAATTTACTGGGTAACCGCAAAGCCAACANTTTNCA]
consensusID : consensus_7503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[AGAATCGCCACGAGGNGTAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCGTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAAGTTACAGTTAAGGGCTATCGGTACGAAAGTCGTTCTGCATGAGCNAAAACGCCCGTACGAGCCAGTGCACGGTACACTGTGCCATGACGGTTGAAGCAGCGGAAAATGCGTCGCAAGGAAGGAGATTTGTACCAGAGTTCC]
[+] EMBL BX469158 [AGAATCGCCACGAGGNGTAGGCTAAAACTCATCTCAATCTCCAGCAAAAATGCCTCTCATCGTAATCACCGGCCTGCCGCGCAGTGGGAAAACAAGCCGCGCCAAAGAGCTGGAAAAATACTTTACCGAGCTGGGTAAAGGGCCGGTGCACATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACCGACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCGTCACCAAGTCGACGCTGGTCATCATGGACGGAACGAAGTTACAGTTAAGGGCTATCGGTACGAAAGTCGTTCTGCATGAGCNAAAACGCCCGTACGAGCCAGTGCACGGTACACTGTGCCATGACGGTTGAAGCAGCGGAAAATGCGTCGCAAGGAAGGAGATTTGTACCAGAGTTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7503#0 -----------TTTACAAAACAAAAGTGCGGCAGGCTAA-AACTCATCTCAA--TCTCCA 46
consensus_7503#2 --------------AGAATCGCCACGAGGNGTAGGCTAA-AACTCATCTCAA--TCTCCA 43
consensus_7503#1 TGGCCAAGGAATTGCCACGACGGTTGAACAGC--GCTAACAACTCATCTCTAACTCTCCA 58
* * * ***** ********** * ******
consensus_7503#0 GCAAAAATGCC--TCTCATCGTAATCACC-GGCCTGCC--GCGCAGTGGGAAAACAAGCC 101
consensus_7503#2 GCAAAAATGCC--TCTCATCGTAATCACC-GGCCTGCC--GCGCAGTGGGAAAACAAGCC 98
consensus_7503#1 GCAAAAATGCTCTTCTCATCGTAATCACCTGGCCTGCCATGCGCAGTGGGAAAACAAGCC 118
********** **************** ******** ********************
consensus_7503#0 GCGCC-AAAGAGCTGGAAAAAT-ACTTTACC--GAGCTGGGTAAAGGGCC-GGTGCA--C 154
consensus_7503#2 GCGCC-AAAGAGCTGGAAAAAT-ACTTTACC--GAGCTGGGTAAAGGGCC-GGTGCA--C 151
consensus_7503#1 GCGCCTAAAGAGCTGGAAAAATTACTTTACCTGAGGCTGGGTAAAGGGCCCGGTGCCACC 178
***** **************** ******** *************** ***** *
consensus_7503#0 ATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACC 214
consensus_7503#2 ATCGTGTCCGAAGCGGACTGCATCGCTCGGTCCGGGTGCGGCGTGAAGGAGAGCTTCACC 211
consensus_7503#1 ATCGTGTTCGAAG---GTCGGAACTTGCGATCCGCCTCCGAGCTCCCCGCGGGTTGCCGT 235
******* ***** * * * ** **** * ** * * * * * *
consensus_7503#0 GACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGC-T 273
consensus_7503#2 GACACGGGAAAGGAAAAGCAAATCCGTGCCAGCCTGAAATCGGAAGCGATGAAGCTGCGT 271
consensus_7503#1 GGCGTGC-AAAGCGGAAGCAGGCC--TTTCAACCGGGAA-CAACGGGGGAAACACAGGGA 291
* * * **** ***** * * ** ** * ** * * * * * *
consensus_7503#0 CACCAAGTCGACGCTGGTCATCATGGACGGAACGAA-TTACA-TTAAGGGCTA--TCGGT 329
consensus_7503#2 CACCAAGTCGACGCTGGTCATCATGGACGGAACGAAGTTACAGTTAAGGGCTA--TCGGT 329
consensus_7503#1 AACACAAGCAACAATTCCCGGTTGGCCCAAGGCCCTTGAACAACTTCGGGACAGGCCCGN 351
** * * ** * * * * * *** * *** * * *
consensus_7503#0 ACGAAATC--TTCTG-CATGAGCAAAAACGCCCGTA--CGACCCAGTGCACGGTACACTG 384
consensus_7503#2 ACGAAAGTCGTTCTG-CATGAGCNAAAACGCCCGTA--CGAGCCAGTGCACGGTACACTG 386
consensus_7503#1 ATGAAACTCCTGGCGTCACACCCAAAGGTTACAGAAACCNGACTTGGGTACCAATCAACT 411
* **** * * ** * ** * * * * * * * ** **
consensus_7503#0 TGCCATGACGGTTGA-GCAGCG--AAATGC--TCGCAGGGA-GGAGATT-GTAT-AGAGT 436
consensus_7503#2 TGCCATGACGGTTGAAGCAGCGGAAAATGCG-TCGCAAGGAAGGAGATTTGTACCAGAGT 445
consensus_7503#1 TGGNACCCGGGGTACNANCTCGACACATTTTACCATTTTACAAGGGCGNCTCTTTAAATT 471
** * ** * ** * ** * * * * * *
consensus_7503#0 TCCTCGAGCGGGGAACTTGATGCGGAAACGTTCGATGCTCTTTGCCAGCGGTACGAGGAA 496
consensus_7503#2 TCC--------------------------------------------------------- 448
consensus_7503#1 CCCGCGAGGCTACGCCAGGANCAACAACTTACCTTTTCCCTTTGGGCAAAATTTGGNAAA 531
**
consensus_7503#0 CCGCAGACACGAG---CCGCTGGGATCGACCCCTGTTTACCGTGTACGGTGGAGAGGAGA 553
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 CGGCCCAGACGAAAAACAACCTNGCCACCCCCCNGGGTGTAACCGGGAAAGNCCAGCAAA 591
consensus_7503#0 TGGAGCTGGCGCGCATCCACAGCGCACTGTACGAACAGGCCCCGCTGCCTCCGAATTTGG 613
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 AGGAGTTTATGGCCGACACTCGGGCGCNTCAACACCANACCTTGGGGTTGGCACACANAT 651
consensus_7503#0 CCACGCAAAATATGCCACTGAGTGCGACCAATTTTCTGTTCGAGCTGGACAAAAGTACGC 673
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 T---GGGNAGCANCGTGTGGGTTNTGNGAAACCCCACAGGCTGGC-ACACAAGACATCTT 707
consensus_7503#0 AGACGATCATCGATCAGATAGCGGCGGCAAGGAAAATTGGCCTGGACGGTCCGGTAGAGA 733
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 GGCCTTTTCCCCGNCCCATATGTGCTGNGAAGNGAGGCAACGCAAATTTACTGG--GTAA 765
consensus_7503#0 TACCGCAGGCGGGCATGCGTGCGGAAGTCCCGGCGAACATGAGCGTGGCGCAGCTTAACC 793
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 CCGCAAAGCCAACANTTTNCA--------------------------------------- 786
consensus_7503#0 GGCATCGACGACAGTTTTTGAACTACGTGAAAATGCACACGAACGTTAGCTCGGATATTA 853
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 ------------------------------------------------------------
consensus_7503#0 GCAAAATACCGGCCATCTTTGTACAGTTTCTCAACACAAATACAAATGGCGCTTAACGAT 913
consensus_7503#2 ------------------------------------------------------------
consensus_7503#1 ------------------------------------------------------------
consensus_7503#0 GAGCGTTTGTTGAAACAACTTAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG 966
consensus_7503#2 -----------------------------------------------------
consensus_7503#1 -----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||