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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1128 fasta sequence
[GCAGAATCGCCACGAGGTNCAGAATAGCCCCCGCTTGATACGCGCGATTCTGTCTTTGTACGGCGTGTCATTTGGAGTTGTTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCA-CGTCACCGTCATTGGTGGCGGTGTGATGGGTTCC-GGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGC-GCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTGGTTCGACAGCCGCCCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGATGATGCGGCTGATCGAGGTGGTGCGCACGAAAGACACATCAGACGCGACGCACGAAGCGTTGCTGGCGTTTGGGAAAAGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTGCTGTTTCCGGTGATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGGGACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATGGACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCGGCGGACGAGGGAACGCGGCCGAGCGAACTGCTCGAGCGGATGGTGGTGCGGGAGAAGAAGCTGGGGGTGAAGTCGGGCGAAGGGTTTTACAGCTACAAATAAAAGAGAGGCGGGTGGATGGGTGGTGGTGGGTTTACGTTTGACCTGTGTTTGATCATTCGAAGAAATATACTT]
[+] EMBL BX468755 [GCAGAATCGCCACGAGGTNCAGAATAGCCCCCGCTTGATACGCGCGATTCTGTCTTTGTACGGCGTGTCATTTGGAGTTGTTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCAGCGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCAGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGGCCAGGTGGAGAAa ]
[+] EMBL CNS08IWG [ CCCCTTGATACGCGCGATTCTGTCTTTGTACGGCGGGTCATTTGGAGTTGTTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCA CGTCACCGTCATTGGTGGCGGTGTGATGGGTTCC GGCATTGCGATGATAACAGCCGCCAACGGGTA CGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGC GCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTGGTTCGACAGCCGCCCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGATGATGCGGCTGATCGAGGTGGTGCGCACGAAAGACACATCAGACGCGACGCACGAAGCGTTGCTGGCGTTTGGGAAAAGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTGCTGTTTCCGGTGATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGGGACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATGGACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCGGCGGACGAGGGAACGCGGCCGAGCGAACTGCTC ]
[-] EMBL CNS08IWH [ TATTAAGCA CGTCACCGTCATTGGTGGCGGTGTGATGGGTTCC GGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGC GCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCATTCTCACCAGCAACACCTCTTGGCTGTCGATCGGCGAGATTGGTTCAACAGCCGCCCGCAAAGATCGCATCGGTGGGCTAAACTTCTTCAACCCCGTGCCGATGATGCGGCTGATCGAGGTGGTGCGCACGAAAGACACATCAGACGCAACGCACGAAGCGTTGCTGGCGTTTGGGAAAAGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTGCTGTTTCCGGTAATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGGGACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATGGACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCGGCGGACGAGGGAACGCGGCCGAGCGAACTGCTCGAGCGGATGGTGGTGCGGGAGAAGAAGCTGGGGGTGAAGTCGGGCGAAGGGTTTTACAGCTACAAATAAAAGAGAGGCGGGTGGATGGGTGGTGGTGGGTTTACGTTTGACCTGTGTTTGATCATTCGAAGAAATATACTT]
consensusID : consensus_7520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 656 fasta sequence
[CCCCGAGGTTAACGGCTGCGAGTACGGGCAGCC-TTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCG-ATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCG-CCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGCATGATGCGGCTGATCGAGGTGGTGCGCACAAGGGACACATCAGACGGGACGCACGAAGCGTTGCTGGCCGTCGGGAAAAGTTTGCGCAAAACGTGCATCACCTG]
[+] EMBL AL929887 [CCCCGAGGTTAACGGCTGCGAGTACGGGCAGCC TTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCG ATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAANACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCG CCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGCATGATGCGGCTGATCGAGGTGGTGCGCACAAGGGACACATCAGACGGGACGCACGAAGCGTTGCTGGCCGTCGGGAAAAGTTTGCGCAAAACGTGCATCACCTG]
[+] EMBL BX603213 [ aacCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCG ATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCG CCcg ]
[+] EMBL BX627626 [ AAGTGCTAAATTCTTGTGTGCGTATGGCAGCGGCAACGGTGAATATTNAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCATTGCGATGATAACAGCCGCCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGGCCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCAAGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACAGCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAAATCTCNAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCNCACAATTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCGCCCGCAAAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCG ATGATGCGGCTGATCGAGGTGG ]
consensusID : consensus_7520#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[CAGAATTCGGCACGAGGTGTNTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTCCCGGCAATTTGCGATAATTAACAGCCGGCCAACGGGTACCGGGGTGAACCGGTGGTTCGAAGGTTGAAGCGAANGGATTGCGGGCCGGGACGTTCCGAANGGCGGCCCAAGGTTGGAGAAAAGAATCTTGCGCCCGGAATTGGGGCCCAAACCAACGGTTCNAGCAAGGGGCCAACCGNAGGCAAGCGGAAGGGGTTAAAGGTTTCTTTCAACCGGACAACCGGCCGGCCCCGGCTTTTGGGCGGTTACAGCTTTGCAAGCTTAGAAGGGAAGGGTTCTGTTGCCGGGGCACCCGGAT]
[+] EMBL BX468675 [CAGAATTCGGCACGAGGTGTNTGTGCGCGAAGAACCGGCTGCGAGTACGGGCAGCCTTTTTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAACGGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTCCCGGCAATTTGCGATAATTAACAGCCGGCCAACGGGTACCGGGGTGAACCGGTGGTTCGAAGGTTGAAGCGAANGGATTGCGGGCCGGGACGTTCCGAANGGCGGCCCAAGGTTGGAGAAAAGAATCTTGCGCCCGGAATTGGGGCCCAAACCAACGGTTCNAGCAAGGGGCCAACCGNAGGCAAGCGGAAGGGGTTAAAGGTTTCTTTCAACCGGACAACCGGCCGGCCCCGGCTTTTGGGCGGTTACAGCTTTGCAAGCTTAGAAGGGAAGGGTTCTGTTGCCGGGGCACCCGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7520#0 GCAGAATCGCCACGAGGTNCAGAATAGCCCCCGCTTGATACGCGCGATTCTGTCTTTGTA 60
consensus_7520#1 ------------------------------------------------------------
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 CGGCGTGTCATTTGGAGTTGTTGTGCGCGAAGA-ACCGGCTGCGAGTACGGGCAGCCTTT 119
consensus_7520#1 ------------------------CCCCGAGGTTAACGGCTGCGAGTACGGGCAGCCTTT 36
consensus_7520#2 CAGAATTCGGCACGAGGTGTNTGTGCGCGAAGA-ACCGGCTGCGAGTACGGGCAGCCTTT 59
* *** * * ************************
consensus_7520#0 TTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAAC 179
consensus_7520#1 T-CGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAAC 95
consensus_7520#2 TTCGGTCCCATTTGGTGTTTGCAGAAGTGCTAAATTCTTGTGTGCGATGGCAGCGGCAAC 119
* **********************************************************
consensus_7520#0 GGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCA--TTGCG 237
consensus_7520#1 GGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTTCCGGCA--TTGCG 153
consensus_7520#2 GGTGAATATTAAGCACGTCACCGTCATTGGTGGCGGTGTGATGGGTCCCGGCAATTTGCG 179
********************************************** ****** *****
consensus_7520#0 ATGAT-AACAGCCG-CCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGG 295
consensus_7520#1 ATGAT-AACAGCCG-CCAACGGGTACCGGGTGACCGTGGTCGAGGTGAGCGAGGATGCGG 211
consensus_7520#2 ATAATTAACAGCCGGCCAACGGGTACCGGG-----GTGAACCGGTGGTTCGAAGGTTGAA 234
** ** ******** *************** *** * * * *** * *
consensus_7520#0 CCGGACGTGCGAGGCGCCAGGTGGAGAAGGATCTGCGCCGGATGGCCCAACACGTCAGCA 355
consensus_7520#1 CCGGACGTGCGAGGCGCCAGGTGGAGAAAGATCTGCGCCGGATGGCCCAACACGTCAGCA 271
consensus_7520#2 GCGAANGGATTGCGGGCCGGGACG--------TTCCGAANGGCGGCCCAAGGT-TGGAGA 285
** * * * *** ** * * ** * ******* * *
consensus_7520#0 AGGGCAACGAGCAGGCGGAGGGTAAATTCTTCACCGACACCGCCGCCCGCTTGGCGTACA 415
consensus_7520#1 AGGGCAACGAGCAGGCGGAGGGTAAGTTCTTCACCGACACCGCCGCCCGCTTGGCGTACA 331
consensus_7520#2 AAAGAATCTTGCGCCCGGAAT-TGGGGCCCAAACCAACGGTTCNAGCAAGG-GGCCAACC 343
* * * * ** **** * * *** ** * * *** **
consensus_7520#0 GCGTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAA 475
consensus_7520#1 GCTTGCAGCTAGAGGAGGTCGTTGCCGGCACCGATCTTGTCATTGAAGCGATCGTGGAAA 391
consensus_7520#2 GNAGGCAAGCGGAAGGGGTTAAAGGTTTCTTTCAACCGGACAACCGGCCGGCCCCGGC-- 401
* *** ** * *** * * * * * ** ** * **
consensus_7520#0 ATCTCCAGCAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACCA 535
consensus_7520#1 ATCTCGAACAAAAGCAAACGCTCTTCAAACTGCTCGATCAGAAAGCACCCCCTCACACAA 451
consensus_7520#2 -TTTTGGGCGGTTACA---GCTTTGCAAGCT--TAGAAGGGAAGGGTTCTGTTGCCGGGG 455
* * * ** *** * *** ** * ** *** * * * *
consensus_7520#0 TTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTGGTTCGACAGCCGCCCGCA 595
consensus_7520#1 TTCTCACCAGCAACACCTCTTCGCTGTCGATCGGCGAGATTAGTTCGACGGCCGCC-GCA 510
consensus_7520#2 CACCCGGAT--------------------------------------------------- 464
* *
consensus_7520#0 AAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCG-ATGATGCGGCTGATCGAG 654
consensus_7520#1 AAGATCGCATCGGTGGGCTACACTTCTTCAACCCCGTGCCGCATGATGCGGCTGATCGAG 570
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 GTGGTGCGCACGAAAGACACATCAGACGCGACGCACGAAGCGTTGCTGGCGTTTGGGAAA 714
consensus_7520#1 GTGGTGCGCACAAGGGACACATCAGACGGGACGCACGAAGCGTTGCTGGCCGTCGGGAAA 630
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 AGTTTGCGCAAAACGTGCATAACCTGCCGGGATGTGCCGGGCTTCGTCGTCAATCGGTTG 774
consensus_7520#1 AGTTTGCGCAAAACGTGCATCACCTG---------------------------------- 656
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 CTGTTTCCGGTGATACACGAGGCGCTCGGGATGGTGGAGCGGGGCGATGCGACCCACCGG 834
consensus_7520#1 ------------------------------------------------------------
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 GACGTGGACGTGGCGATGAAGCTGGGGCTCGGCCATCCGATGGGCCCGTTCGAGCTGATG 894
consensus_7520#1 ------------------------------------------------------------
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 GACATTGTCGGGCTGGACACGGTGCGCTCGATACTGCACGAACGGCACGCGCGCAACCCG 954
consensus_7520#1 ------------------------------------------------------------
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 GCGGACGAGGGAACGCGGCCGAGCGAACTGCTCGAGCGGATGGTGGTGCGGGAGAAGAAG 1014
consensus_7520#1 ------------------------------------------------------------
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 CTGGGGGTGAAGTCGGGCGAAGGGTTTTACAGCTACAAATAAAAGAGAGGCGGGTGGATG 1074
consensus_7520#1 ------------------------------------------------------------
consensus_7520#2 ------------------------------------------------------------
consensus_7520#0 GGTGGTGGTGGGTTTACGTTTGACCTGTGTTTGATCATTCGAAGAAATATACTT 1128
consensus_7520#1 ------------------------------------------------------
consensus_7520#2 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||