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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1790 fasta sequence
[TTACACTCCTCCGCCCCAGCTGCAAGGGTCTCGCGGGCGCCAAGATGCCACGGAAGTTGCTGAAATTTCTCATCCTCTTCGACAACACGTCGCTGCTGTACTTCCCGGGCCAGTTTCTGTCCGGGCGGGTGCTGCTCGAGCTCCACGTCCTCCCACCGGTGCTGGGACTTCATTTCCATGTCGTTGGCGAGTGTGTCGTGCGCGTGCGCTCGACGCGCCACGAGCGATCGTACGATAAGGAAAACTATATCGACTTCCGGATGCGCCTGCTGGGCGATTCCGACAACCAAGGGCCCACAGCTTTTCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGGCTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAACCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTGAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTTACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTACAGAGACGATACAGTATTTTGCACGCGATAAGGTGATGCAGACGGAGAAACGAGAGCTGGCAGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCTTTACGTGCCACCGCTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGGATCCAGTACGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCCGATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCATCCGAGCAGCCGGGTTTGGAGGATAGTTGGCTGGTAGAAACGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATA-TTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTGCCTTGTTTCAGCAGATTTACCAGCTCTTCATAGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGAAGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACAATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAACTCCGTTTGTGGCACCAGCGCTACCAATTTCGGACGCGTGGGCGG]
[+] EMBL CNS08DDY [TTACACTCCTCCGCCCCAGCTGCAAGGGTCTCGCGGGCGCCAAGATGCCACGGAAGTTGCTGAAATTTCTCATCCTCTTCGACAACACGTCGCTGCTGTACTTCCCGGGCCAGTTTCTGTCCGGGCGGGTGCTGCTCGAGCTCCACGTCCTCCCACCGGTGCTGGGACTTCATTTCCATGTCGTTGGCGAGTGTGTCGTGCGCGTGCGCTCGACGCGCCACGAGCGATCGTACGATAAGGAAAACTATATCGACTTCCGGATGCGCCTGCTGGGCGATTCCGACAACCAAGGGCCCACAGCTTTTCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGGCTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAACCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTGAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTTACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTACAGAGACGATACAGTATTTTGCACGCGATAAGGTGATGCAGACGGAGAAACGAGAGCTGGCAGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCTTTACGTGCCACCGCTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGGATCCAGTACGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCCGATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACA ]
[+] EMBL CNS08QXQ [ tTGCGCCTGCGGGGCGATTCCGACAACCAAGGGCCCACAGCTTCCCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGGCTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAACCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTGAAGTGTAAAAACATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTT ]
[+] EMBL BX611163 [ TCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGCGGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCATCGTAAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGATCACGGCGACGGTAACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTACAGAGACGATACAGTATTTTGCACGCGATAAGGTAATGCAGACGGAGAAACGAGAGCTGGCAGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCTTTACGTGCCACCACTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGTATCCAGTACGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTCCAGCTGCCGATCACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACGATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCAT ]
[-] EMBL BX612124 [ atttgcagTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCCGATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGCCGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTGGTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCATCCGAGCAGCCGGGTTTGGAGGATAGTTGGCTGGTAGAAACGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATA TTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTGCCTTGTTTCAGCAGATTTACCAGCTCTTCATAGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAG ]
[-] EMBL BM636838 [ TTTGTCAGTTGCGATATTTCCGCGCACGCCCTGTCTCTGCAGGTAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTGCCTTGTTTTAGCAGATTTACCAGCTCTTCATCATTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTACGACGTCGTTTCGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGATCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGAAGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACAATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAACTCCGTTTGTGGCACCAGCGCTACCAATTTCGGACGCGTGGGCGG]
consensusID : consensus_7536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[TTTTTGAAAG-AGCAATACAATTCATCTGAATAATTATTTTACCGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTTGTTTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGACGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACCATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAATTCCGTTTGCGGCA]
[+] EMBL CNS08ELZ [TTTTTGAAAG AGCAATACAATTCATCTGAATAATTATTTTACCGTAAACCACAATTGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACTGCCCACTTTTGTTTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGACGACGGATCCTCAAAGTGGGTGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGTCTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAGCGAAAGGAATAAAATCAACGCGGAAGCCACCATGTCGATCCGCTTCGCCCAGCGGATCATGCGCCAATTCCGTTTGCGGCA]
[-] EMBL BM628650 [ GAAAGTTTCAATACAATTCATCTGAATAATTATTTTACCGTAAACCACAA TGGTAGCTTAAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTGCGATATTCCGCGCACGCCCTGTCTCTGCAGGTAATCCTTCAGCACGGGTATGGTTAAACTGCCCAC TTTGCCTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCCTCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAGGTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCTTGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGTCGAACACCAGCGACTCGATGTTGcgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7536#0 TTACACTCCTCCGCCCCAGCTGCAAGGGTCTCGCGGGCGCCAAGATGCCACGGAAGTTGC 60
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 TGAAATTTCTCATCCTCTTCGACAACACGTCGCTGCTGTACTTCCCGGGCCAGTTTCTGT 120
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CCGGGCGGGTGCTGCTCGAGCTCCACGTCCTCCCACCGGTGCTGGGACTTCATTTCCATG 180
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 TCGTTGGCGAGTGTGTCGTGCGCGTGCGCTCGACGCGCCACGAGCGATCGTACGATAAGG 240
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 AAAACTATATCGACTTCCGGATGCGCCTGCTGGGCGATTCCGACAACCAAGGGCCCACAG 300
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CTTTTCGTTCAAGCTCGGCCTGCCCGTCGATCTGCCGTCGACCTTTCTCGGGCGGTACGG 360
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CTGGGTGCAGTACTTCTGCAAGGCCGGGCTGCGCGAACCGTCCGGCCTGATACACAAGAA 420
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CCACCAGGTGTTCATCGTGATGAATCCGATCGATCTCAACCTTGAGCAGCCTTATCTGGC 480
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 GGATCCTTTTAAATGCAACATTGAGCATAATCTCGGGATGGCTTGCGTCGGCGGAGGCAT 540
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CGTGAAGTGTAAAATCATACTCGATCGTGGCGGATACGTGCCGGGCGAGTCGATCATGAT 600
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CACGGCGACGGTTACGAATGCGAGCAGTGTGACGATCAAATCGACCAAAGCTGCACTTAC 660
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 AGAGACGATACAGTATTTTGCACGCGATAAGGTGATGCAGACGGAGAAACGAGAGCTGGC 720
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 AGTGATAGCCCGGGGCAAGATACGGGCCGGTCACAGGGACGAATGGCAGAACGAGTCCCT 780
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 TTACGTGCCACCGCTGCCACCGACCAATCTGCGCGGCTGTCATCTAATACGGATCCAGTA 840
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CGACGTTTGTTTCTTAATAGAACCGAAATCGTTGGAAAAACAGATCAAACTACAGCTGCC 900
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 GATTACGCTCGGCACGTACCCGTTCAAGACGGCGGACGGTGACGACACGAACGAGTGGGC 960
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 CGAAACAATCTACAAGCCGGAAACGCACTACCCGTCCACGCTGCCCATCTTTCGGCCCTG 1020
consensus_7536#1 ------------------------------------------------------------
consensus_7536#0 GTTACACGAGAAAAACGATCAAAAGTAACACACATCTGACGATCCCTGCGATGAGCATCC 1080
consensus_7536#1 ---------------------------------------------------TTTTTGAAA 9
*
consensus_7536#0 GAGCAGCCGGGTTTGGA-GGATAGTTGGCTGGTAGAAACGTAAACCACAATTGGTAGCTT 1139
consensus_7536#1 GAGCAATACAATTCATCTGAATAATTATTTTAC-----CGTAAACCACAATTGGTAGCTT 64
***** ** * *** ** * **********************
consensus_7536#0 AAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTG 1199
consensus_7536#1 AAATGTTTAATCTGCTTGCATAGCTAAAATCTGATCTACAAGGCCTGATTTTGTCAGTTG 124
************************************************************
consensus_7536#0 CGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACT 1259
consensus_7536#1 CGATATTCCGCGCACGCCCTGTCTCTGCAGGAAATCCTTCAGCACGGGTATGGTTAAACT 184
************************************************************
consensus_7536#0 GCCCACTTT-GCCTTGTTTCAGCAGATTTACCAGCTCTTCATAGTTGACCGGTGCGACCC 1318
consensus_7536#1 GCCCACTTTTGTTTTGTTTCAGCAGATTTACCAGCTCTTCATCGTTGACCGGTGCGACCC 244
********* * ***************************** *****************
consensus_7536#0 TCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAG 1378
consensus_7536#1 TCGGGCCTTTCGTTCGCGGTTCGCCATCATGGTCCGTTCCCTCATTGCGACGTCGTTTAG 304
************************************************************
consensus_7536#0 GTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCT 1438
consensus_7536#1 GTGCTTCCTCGACATCCTCCCCAAACAGGCGCTCCATATCGGTCAGAATTGGTTCCAGCT 364
************************************************************
consensus_7536#0 TGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGT 1498
consensus_7536#1 TGGTATCGATCCGGTCGCAATCGGGTCGCGTAGAATCGAACAGTTCGGCATCTTCCACGT 424
************************************************************
consensus_7536#0 CGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGAAGACGGATCCTCAAAGTGGG 1558
consensus_7536#1 CGAACACCAGCGACTCGATGTTGATGAACAGATTTTGCGACGACGGATCCTCAAAGTGGG 484
**************************************** *******************
consensus_7536#0 TGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGT 1618
consensus_7536#1 TGGGATGAAATTTGAACTTCACCTTTTTGATCATCTTTTTAAACAGATCGGTCTGCTCGT 544
************************************************************
consensus_7536#0 CTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAG 1678
consensus_7536#1 CTGTGACTTCCGGGGCGGTGGCTGACTCCTCCAGGAAGGGAAGCTTTCTGATGTCACCAG 604
************************************************************
consensus_7536#0 CGAAAGGAATAAAATCAACGCGGAAGCCACAATGTCGATCCGCTTCGCCCAGCGGATCAT 1738
consensus_7536#1 CGAAAGGAATAAAATCAACGCGGAAGCCACCATGTCGATCCGCTTCGCCCAGCGGATCAT 664
****************************** *****************************
consensus_7536#0 GCGCCAACTCCGTTTGTGGCACCAGCGCTACCAATTTCGGACGCGTGGGCGG 1790
consensus_7536#1 GCGCCAATTCCGTTTGCGGCA------------------------------- 685
******* ******** ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||