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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1582 fasta sequence
[TGAAAATGTAATTTAATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCCA----CCTCCCCCCCGGGG---TAGATTGATAAAGCTGTTTCATTTTAATACTCCAGCGTAATTCGTGCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATGTACCCAAAGAAGAGATCGGTTATTAAGAAAATCTGCGCGGTGCAGAAAATCAACGTCACGCCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGACCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAAGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAATACCAAAACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCATCCATCAGAAAGCTGCCGAAGTAATTAACTCCTAAAAATAGCGCCACAAACAACGCACTGCTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCGCCCGGGGC-GA-GCAGAACAA-ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAGGCGAACCCCACGGACATCGGCACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTGTCCTTTGCGTAGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCCAGCAGGAGAAGGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGGGGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGTCGCCATCGTACGGATTTACTCCGTTCGCGTACAGATAGGCACCTTCCTCGACCCTCTTCCACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGTTCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCA-TTTTTACCTTAT-GCCCTTGGTCCGAGTTCAGCTCCAACGAGACAGTTCCAGCGCTCTGTGATGTATTGTTTAACATGTAAACCTAATGTTCAAGCTCGCAATTCACAATTCCAGCCTCGCAATAGTCACATATCAATCCACATTCTCGTCAATTTTGGATACAAGCCCGGT]
[-] EMBL BX619034 [TGAAAATGTAATTTAATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCCACCCGCCTCCCCCCCGGGGAGCTAGATTGATAAAGCTGTTTCATTTTAATACTCCAGCGTAATTCGTGCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATGTACCCAAAGAAGAGATCGGTTATTAAGAAAATCTGCGCGGTGCAGAAAATCAACGTCACGCCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGACCAACATTGTCGCGCCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAAGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATA ]
[+] EMBL CNS098RZ [ AATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCCA CCTCCCCTGATGGG TAGATTGATAAAACTGTTTCATTTTAATACTCCAGCGTAATTCGTGCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATGTACCCAAAGAAGAGATCGGTTATTAGGAAAATCTGCGCGGTGCAGAAAATCAACGTCACGCCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGGCCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAGGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAATACCAAAACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCATCCATCAGAAAGCTGCCGAAGTAATTAACTCCTAAAAATAGCGCCACAAACAACGCACTGCTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCGCCCGGGGG GA CCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGGGTGACAGCCCGTAGAAGAAC ]
[-] EMBL BX624615 [ AGAAANTCAACGTCACGCCAAAGTAAAAGTTGGAGTTGNCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGCGCAAGCACGCTCGTGACCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATAGAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGTCTCCGATGCAAGGATACGAGCGAAAGACGGCCCCCAGACCGATCAGCATCGTCGCAAGCATGATCGGTTCCTTGTGCAGCTTGAACGTGAGCGGAAACAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACAGCGTCCGGAAGTGATCGAACATCTCGGTAAAGAAGTACCAAAACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGCCTAAAAATAGCGCCACAAACAACACACTGCTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGC GA GCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAGGCGAACCCCACGGACATCGGCACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTG ]
[-] EMBL CNS098RY [ CCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCCCCCGGGGC GA CCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCAAGCAGGAAATTGCTCCAAACGGTCGTCGTCTGCCCAACGCAGTTCAGGATGGTGTAGGGATCGAACAGGTAGGCGAACCCCACGGACATCGGCACCGTGTGCATGTCCGTCTCGACAAGATGCAGCTCCTCCGTGTCCTTTGCGTAGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCCAGCAGGAGAAGGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGGGGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGTCGCCATCGTACGGATTTACTCCGTTCGCGTACAGATAGGCACCTTCCTCGACCCTCTTCCACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGTTCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCA TTTTTACCTTAT GCCCTTGGTCCGAGTTCAGCTCCAACGAGACAGTTCCAGCGCTCTGTGATGTATTGTTTAACATGTAAACCTAATGTTCAAGCTCGCAATTCACAATTCCAGCCTCGCAATAGTCACATATCAATCCACATTCTCGTCAATTTTGGATACAAGCCCGGT]
[-] EMBL BM646839 [ CCTGGTTGGCAATGTGTAGGGCGCCCGGGGC GA GCAGAACAA ACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAAGCGAACCCCACGGACATCGGTACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTGTCCTTTGCGTAGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCTAGCAGGAGAACGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGGGGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGTCGCCATCGTACGGATTCACTCCGTTCGCATACAGATAGGCACCTTCCTCGACCCTCTTCCACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGTTCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCATTTTTTCCCCTATCGCCCTTGGTCCGAGTTCAGCTCCAACGAGACcgg ]
[-] EMBL BX619846 [ CCGGGGGCGGAGGCAGAACAANACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATGGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGNACAGGTAGGCGAACCCCACGGACA ]
consensusID : consensus_7547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[ACGTGCTCCGATGCCAAGAATACGGAGCGATAAGTACCGNCCCCCCAGGACCGATNCAGGCATCGTTCGGCAAGNCATGGATCGGTTCCCTTGTGCCAGCTTGAACCGTGAGNCGGGAATACCAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACCAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAGTACCAAANACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGCCTAAAAATAGCGCCACAAACAACACACTGGTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCAGAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCATAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGTAAACCTCGGG]
[-] EMBL AL929946 [ACGTGCTCCGATGCCAAGAATACGGAGCGATAAGTACCGNCCCCCCAGGACCGATNCAGGCATCGTTCGGCAAGNCATGGATCGGTTCCCTTGTGCCAGCTTGAACCGTGAGNCGGGAATACCAGATACAGCAGCGTGGCGTTGATCTGGAACGAGTACAGGAACCAGCGTCCGGAAGTGATCGAACATCTCGGTGAAGAAGTACCAAANACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCATACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGCCTAAAAATAGCGCCACAAACAACACACTGGTGCTCGCTATGCTACGAAACCGACTGCCAGCGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCAGAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACCGCTGACGGCGTGACAGCCCATAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCGTCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGTAAACCTCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7547#0 TGAAAATGTAATTTAATTTATTTGTTTGTTCTAAGCTTTTCTTTACAGCTGCTCTTATCC 60
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 ACCTCCCCCCCGGGGTAGATTGATAAAGCTGTTTCATTTTAATACTCCAGCGTAATTCGT 120
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 GCCTCCTTTCCGTCCACGAGCACACGAATGCCGTGCTTCAGACAGAACTCTCGCTTGATG 180
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 TACCCAAAGAAGAGATCGGTTATTAAGAAAATCTGCGCGGTGCAGAAAATCAACGTCACG 240
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 CCAAAGTAAAAGTTGGCGTTGGCCGAATTGTTGTAGATCCACAGATGCCACACGGTGGGC 300
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 GCAAGCACGCTCGTGACCAGCATTGTCGCACCGACGATAAAATTGTTCTTCATGAACATA 360
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 GAGATCGATTTCCACAGCGGTATGAGGGCGAGATAGAAGCTAACGT-CTCCGATGC-AAG 418
consensus_7547#1 ------------------------------------------ACGTGCTCCGATGCCAAG 18
**** ********* ***
consensus_7547#0 GATACG-AGCGAAAGA---CGGCCCCC--AGACCGATC--AGCATCGTC--GCAAGC-AT 467
consensus_7547#1 AATACGGAGCGATAAGTACCGNCCCCCCAGGACCGATNCAGGCATCGTTCGGCAAGNCAT 78
***** ***** * ** ***** ******* ******* ***** **
consensus_7547#0 G-ATCGGTTCC-TTGTGC-AGCTTGAAC-GTGAGCGGAAA----CAGATACAGCAGCGTG 519
consensus_7547#1 GGATCGGTTCCCTTGTGCCAGCTTGAACCGTGAGNCGGGAATACCAGATACAGCAGCGTG 138
* ********* ****** ********* ***** * * ****************
consensus_7547#0 GCGTTGATCTGGAACGAGTACAGGAAC-AGCGTCCGGAAGTGATCGAACATCTCGGTGAA 578
consensus_7547#1 GCGTTGATCTGGAACGAGTACAGGAACCAGCGTCCGGAAGTGATCGAACATCTCGGTGAA 198
*************************** ********************************
consensus_7547#0 GAAATACCAAAA-CAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCAT 637
consensus_7547#1 GAAGTACCAAANACAGCCCAATGTTAGGCTGCAAGCTGCGGCAGTTGATAATGAAACCAT 258
*** ******* ***********************************************
consensus_7547#0 ACGTTGCATCTAGGAAACTCCAGTCGCCATCCATCAGAAAGCTGCCGAAGTAATTAACTC 697
consensus_7547#1 ACGTTGCATCTAGGAAACTCCAGTCGCCACCCATCAGAAAGCTGCCGAAGTAATTAACGC 318
***************************** **************************** *
consensus_7547#0 CTAAAAATAGCGCCACAAACAACGCACTGCTGCTCGCTATGCTACGAAACCGACTGCCAG 757
consensus_7547#1 CTAAAAATAGCGCCACAAACAACACACTGGTGCTCGCTATGCTACGAAACCGACTGCCAG 378
*********************** ***** ******************************
consensus_7547#0 CGCTGCCCCCGTTCTCCCTCAGCTCCCGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCA 817
consensus_7547#1 CGCTGCCCCCGTTCTCCCTCAGCTCCTGGTTGGCAATGTGTAGGGCGCCCGGGGCGAGCA 438
************************** *********************************
consensus_7547#0 GAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACC 877
consensus_7547#1 GAACAAACGGATACAGATTGATCTGTGTTTCGAGAGCAAGCGCCAAAAAACTAAGCAACC 498
************************************************************
consensus_7547#0 GCTGACGGCGTGACAGCCCGTAGAAGAACGCGGCCAGCAGGAAATTGCTCCACACGGTCG 937
consensus_7547#1 GCTGACGGCGTGACAGCCCATAGAAGAATGCGGCCAGCAGGAAATTGCTCCACACGGTCG 558
******************* ******** *******************************
consensus_7547#0 TCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAGGTAGGCGAACCCCACGG 997
consensus_7547#1 TCGTCTGTCCAACGCAGTTCAGGATGGTGTAGGGATTGAACAG-----TAAACCTCGGG- 612
******************************************* **** * *
consensus_7547#0 ACATCGGCACCGTGTGCATGTCCGTCTCGACTAGATGTAGCTCCTCCGTGTCCTTTGCGT 1057
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 AGCTATCCTTTTCTTTTCGTTGTTTTTCGTACATTTCGCGGATGAATACACGCGCTGCCA 1117
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 GCAGGAGAAGGATGCCGGTCGCTACGTCTAGCAGGATGAACAGGGACGGTATGGCACTGG 1177
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 GGACGTTATCGAGCAGCCAGCGGGAGGCATGCAGTATGAGCGGGTTTTTGTGGTACACGT 1237
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 CGCCATCGTACGGATTTACTCCGTTCGCGTACAGATAGGCACCTTCCTCGACCCTCTTCC 1297
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 ACGAGTTGATGGGTGTGGACACCTCCACCCGGTTCTGTATCCCGTGGGAATAGCGGGAGT 1357
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 TCATAAGCAGGAACCGCACGGCCGCGGCCACTCCTACACTTATTGCTAGTTTCATTTTTA 1417
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 CCTTATGCCCTTGGTCCGAGTTCAGCTCCAACGAGACAGTTCCAGCGCTCTGTGATGTAT 1477
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 TGTTTAACATGTAAACCTAATGTTCAAGCTCGCAATTCACAATTCCAGCCTCGCAATAGT 1537
consensus_7547#1 ------------------------------------------------------------
consensus_7547#0 CACATATCAATCCACATTCTCGTCAATTTTGGATACAAGCCCGGT 1582
consensus_7547#1 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||