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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1894 fasta sequence
[CCGCCCACGCGTCCGATAGAAGAGATTCTCAAAAAAGCGAAGATGAGGAAGACAATTCGTTTGTTCTTTTACTGACACATAAGGAACAAACGAAAAAAACAACAGCTGCTCAAGTTGGGTCGTATCGTTCAATTGACTGCCGAAGCATCTACGGTTGGAAAATCATCCAGTGAAAATGAGCACGAGGAAGAAAGCACAGAAGAGTCATGGGGAAGAAAATTTAATATCAGCTTGTTGGATCAACACACTGAACTTAAAAAGATAGCAGAAGCTAAGAAAATTAGCGCAGTAGAAAAACAATTGAAAGAGGAGGAGAAAATCCTCGAAAGTGTCGCTGAAAAAAAAGCACTCATGGGTGTTGCTGAGTTGGCCAAGGGAATACAGTATGAAGATCCTATCAAAACCAGCTGGACGCCTCCAAGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATACTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCAAAAGCCGTGTTAGCA-GCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATA-CCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCGGGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCTAAATCTGCTTTAGTAAAACCAGTTACAATCAACGTTGGACGTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGCAGGAGGCAAAAGTTGTGTATTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAGTACTGATATTTGCTGAGAAAAAGCAAGATGTCTACGGAATTCATGAATATTTATTAATTAAAGGGGTAGAAGCAGTAGCTATCCACGGAGGAAAAGATCAAGAAGAGCGATATCGGTCGGTCGAGTCATTTAGAAATCAAGAGAAGGACGTGCTAGTTGCCACTGACGTCGCATCTAAAGGTTTGGATTTTCCGGATGTGCAGCATGTAATTAATTATGATATGCCAGACGATATCGAAAACTACGTACATCGAATTGGTCGTACTGGTCGATCTGGATCAAAAGGTTTAGCGACAACATTTATCAATAAGGCGACAGAGCAGTTTGTACTATTGGATTTGAAACATCTTTTGATTGAAGCTCAACAAAAAGTTCCTCCGTTCTTGGGTGAACTATGCTCGGAAACAGAGAAATACGCAGATCTCGGTGATGGCTGTAGTTATTGTGGTGGTTTAGGTCACCGCATCACGGAATGTCCTAAACTTGAAGCCGTGCAAAGCAAACAAGCTTCTAATATTGGACGCAGAGATTATTTATCGAACACTGCTGCTGATTATTAATGTAGTTTCAGTACAGTAGCACTGCAGATGCACTATCTTATCTACAGCATTTATGATT]
[+] EMBL BM580428 [CCGCCCACGCGTCCGATAGAAGAGATTCTCAAAAAAGCGAAGATGAGGAAGACAATTCGTTTGTTCTTTTACTGACACATAAGGAACAAACGAAAAAAACAACAGCTGCTCAAGTTGGGTCGTATCGTTCAATTGACTGCCGAAGCATCTACGGTTGGAAAATCATCCAGTGAAAATGAGCACGAGGAAGAAAGCACAGAAGAGTCATGGGGAAGAAAATTTAATATCAGCTTGTTGGATCAACACACTGAACTTAAAAAGATAGCAGAAGCTAAGAAAATTAGCGCAGTAGAAAAACAATTGAAAGAGGAGGAGAAAATCCTCGAAAGTGTCGCTGAAAAAAAAGCACTCATGGGTGTTGCTGAGTTGGCCAAGGGAATACAGTATGAAGATCCTATCAAAACCAGCTGGACGCCTCCAAGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATACTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCAAAAGCCGTGTTAGCA GCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATACCCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGG ]
[+] EMBL BM616759 [ ccgCAGCTGGACGCCTCCAAGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATACTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCAAAAGCCGTGTTAGCA GCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATA CCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCGGGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTGCTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATT ]
[+] EMBL BX620210 [ CAAAAGCCGTGTTAGCATTCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTGCAAGGTATA CCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCGGGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCTAAATCTGCTTTAGTAAAACCAGTTACAATCAACGTTGGACGTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGC ]
[+] EMBL BX624917 [ TATGTTCTGTTTAGAGCAAGAATTACGGCTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTAGCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATGCCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATCATTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCTAAATCTGCTTTAGTAAAACCAGTTACAATCAACGTTGGACGTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGCAGGAGGCAAAAGTTGTGTATTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAGTACTGATATTTGCT ]
[+] EMBL BX614833 [ aAGTTACAATCAACGTTGGAAGTGCGGGTGGCGCTTCAATGAACGTAACTCAAGAAGTGGAATACGTAAAGCAGGAGGCAAAAGTTGTGTATTTGTTAGAGTGTTTGCAGAAAAAACTATGTCTAGTACTGATATTTGCTGAGAAAAAGCAAGATGTCTACGGAATTCATGAATATTTATTAATTAAAGGGGTAGAA ]
[+] EMBL BX623191 [ GTGCGGGTGCCGCTTCAATGAACGTAACTCAAGACGTGGAATACGTAAAGCAGGAGGCAAAAGTTGNGTATTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAGTACTGATATTTGCTGAGAAAAAGCAAGATGTCGACGCAATTCATGAATATTTATTACTTAAAGGGGTAGAAGCAGTAGCTATCCACGGAGGAAAAGATCAAGAAGAGCGATATCGGTCGGTCGAGTCATTTAGAAATCAAGAGAAGGACGTGCTAGTTGCCACTGACGTCGCATCTAAAGGTTTGGATTTTCCGGATGTGCAGCATGTAATTAATTATGATATGCCAGACGATATCGAAAACTACGTACATCGAATTGGTCGTACTGGTCGATCTGGATCAAAAGGTTTAGCGACAACATTTATCAATAAGGCGACAGAGCAGTTTGTACTATTGGATTTGAAACATCTTTTGATTGAAGCTCAACAAAAAGTTCCTCCGTTCTTGGGTGAACTATGCTCGGAAACAGAGAAATACGCAGATCTCGGTGATGGCTGTAGTTATTGTGGTGGTTTAGGTCACCGCATCACGGAATGTCCTAAACTTGAAGCCGTGCAAAGCAAACAAGCTTCTAATATTGGACGCAGAGATTATTTATCGAACACTGCTGCTGATTATTAATGTAGTTTCAGTACAGTAGCACTGCAGATGCACTATCTTATCTACAGCATTTATGATT]
consensusID : consensus_7558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[GCNTAGCAGAATNGCCCCGAGGTTTTGCNAGGGGCACACATCATGGTTGCACGCCGGGTCNACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGGCGTAAAATCTGCGTTTAGTANAAACCAGTTAACAATCAACGTTGGACCGTGCGGGGGTGCCCGCGTTCAATGAACGTTAACCTCAAGACGTTGGGAATACGGTAAAGCAGGCAGGCAACAAGTTCGTGGTATTCTGGTTCACGAAGGTTGTTCTGCAGGAAAACACNACCAACCTCCCAG]
[+] EMBL AL693912 [GCNTAGCAGAATNGCCCCGAGGTTTTGCNAGGGGCACACATCATGGTTGCACGCCGGGTCNACTAATGGATATGTTGGATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAATGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAACGACAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGGCGTAAAATCTGCGTTTAGTANAAACCAGTTAACAATCAACGTTGGACCGTGCGGGGGTGCCCGCGTTCAATGAACGTTAACCTCAAGACGTTGGGAATACGGTAAAGCAGGCAGGCAACAAGTTCGTGGTATTCTGGTTCACGAAGGTTGTTCTGCAGGAAAACACNACCAACCTCCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7558#0 CCGCCCACGCGTCCGATAGAAGAGATTCTCAAAAAAGCGAAGATGAGGAAGACAATTCGT 60
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 TTGTTCTTTTACTGACACATAAGGAACAAACGAAAAAAACAACAGCTGCTCAAGTTGGGT 120
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CGTATCGTTCAATTGACTGCCGAAGCATCTACGGTTGGAAAATCATCCAGTGAAAATGAG 180
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CACGAGGAAGAAAGCACAGAAGAGTCATGGGGAAGAAAATTTAATATCAGCTTGTTGGAT 240
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CAACACACTGAACTTAAAAAGATAGCAGAAGCTAAGAAAATTAGCGCAGTAGAAAAACAA 300
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 TTGAAAGAGGAGGAGAAAATCCTCGAAAGTGTCGCTGAAAAAAAAGCACTCATGGGTGTT 360
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 GCTGAGTTGGCCAAGGGAATACAGTATGAAGATCCTATCAAAACCAGCTGGACGCCTCCA 420
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 AGATATATCTTATCCAAACCGGAATCCCGTCACGAGAAAATTCGCGAAAAGCTCCGTATA 480
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CTGACGGAAGGAGAAAATGTACCACCGCCATTGCGTACGTTTCGTGAAATGAAGCTCCCA 540
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 AAAGCCGTGTTAGCAGCCTTGGCGAAAAGAAACATAAAGAAACCTTCTCCTATTCAAGTG 600
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CAAGGTATACCTGCAGTTCTGGCTGGACGAGACTTGATCGGGATCGCATTTACTGGCTCG 660
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 GGTAAAACGTTGGTTTTTGTTTTACCAATCATTATGTTCTGTTTAGAGCAAGAATTACGG 720
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CTACCATTCATTAAACGTGAAGGGCCGTACGGATTGATCATTTGTCCTTCTCGGGAGCTA 780
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 GCGAAACAAACACATGACATAATTCAGTACTATTGTCGCCATCTTCAGGAAGCTGGTATG 840
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CCAGAAATTCGCACTGTTCTCGCAATTGGCGGAGTCCCTGTAAATGACGCCATTGCAATC 900
consensus_7558#1 -----------------------------------------GCNTAGCAGAATNGCCCCG 19
* * ** **
consensus_7558#0 A--TTCAGCAAGGGGCACACATCATGGTTGCCACGCCGGGTCGACTAATGGATATGTTGG 958
consensus_7558#1 AGGTTTTGCNAGGGGCACACATCATGGTTGC-ACGCCGGGTCNACTAATGGATATGTTGG 78
* ** ** ********************* ********** *****************
consensus_7558#0 ATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAA 1018
consensus_7558#1 ATAAAAAATTGGTAACTCTAGATGTATGCCGTTACCTGTGCATGGATGAAGCTGATCGAA 138
************************************************************
consensus_7558#0 TGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAAC 1078
consensus_7558#1 TGATTGACATGGGTTTTGAGGAAGACGTCCGCACAATATTTTCCTATTTTAAGGGACAAC 198
************************************************************
consensus_7558#0 GACAAACTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGCT---AAAT 1135
consensus_7558#1 GACAA-CTCTTTTATTCTCGGCAACCATGCCAAAAAAGATTCAAAATTTTGGCGTAAAAT 257
***** ********************************************* ****
consensus_7558#0 CTGC-TTTAGTAAAA-CCAGTTA-CAATCAACGTTGGAC-GTGCGGGTG---CCGC-TTC 1187
consensus_7558#1 CTGCGTTTAGTANAAACCAGTTAACAATCAACGTTGGACCGTGCGGGGGTGCCCGCGTTC 317
**** ******* ** ******* *************** ******* * **** ***
consensus_7558#0 AATGAACGTAA--CTCAAGACGT--GGAATACG-TAAAGCAGG-AGGCAAAAGTTGTGTA 1241
consensus_7558#1 AATGAACGTTAACCTCAAGACGTTGGGAATACGGTAAAGCAGGCAGGCAACAAGTTCGTG 377
********* * ********** ******** ********* ****** * * **
consensus_7558#0 TTTGTTAGAGTGTTTGCAGAAAACACCACCTCCAG-TACTGATATTTGCTGAGAAAAAGC 1300
consensus_7558#1 GT-ATTCTGGTTCACGAAGGTTGTTCTGCAGGAAAACACNACCAACCTCCCAG------- 429
* ** ** * ** * * * ** * * **
consensus_7558#0 AAGATGTCTACGGAATTCATGAATATTTATTAATTAAAGGGGTAGAAGCAGTAGCTATCC 1360
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 ACGGAGGAAAAGATCAAGAAGAGCGATATCGGTCGGTCGAGTCATTTAGAAATCAAGAGA 1420
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 AGGACGTGCTAGTTGCCACTGACGTCGCATCTAAAGGTTTGGATTTTCCGGATGTGCAGC 1480
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 ATGTAATTAATTATGATATGCCAGACGATATCGAAAACTACGTACATCGAATTGGTCGTA 1540
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 CTGGTCGATCTGGATCAAAAGGTTTAGCGACAACATTTATCAATAAGGCGACAGAGCAGT 1600
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 TTGTACTATTGGATTTGAAACATCTTTTGATTGAAGCTCAACAAAAAGTTCCTCCGTTCT 1660
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 TGGGTGAACTATGCTCGGAAACAGAGAAATACGCAGATCTCGGTGATGGCTGTAGTTATT 1720
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 GTGGTGGTTTAGGTCACCGCATCACGGAATGTCCTAAACTTGAAGCCGTGCAAAGCAAAC 1780
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 AAGCTTCTAATATTGGACGCAGAGATTATTTATCGAACACTGCTGCTGATTATTAATGTA 1840
consensus_7558#1 ------------------------------------------------------------
consensus_7558#0 GTTTCAGTACAGTAGCACTGCAGATGCACTATCTTATCTACAGCATTTATGATT 1894
consensus_7558#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||