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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence
[CCCGTGCAGTTCGCTTTTCCAGCTGCTTGCGCGAGAAAACATACGAAAAAGTGTCGATCTTTCTCTTTGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCCCGTGACATTCTCTACGAATGCGTTGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCGCCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGACAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTATATCCCGCGCCCGAAGATGCAGGTGTGCGTGCTCGGTGACCAGCAGCATTGCGATGAGGCGAAGGCCAACGACATCCCGTTCATGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGTTCAAGCAGATCCCGCGTCTGCTCGGTCCCGGTCTGAACAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCCCAGAACGTGCATCTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAACGTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTGTGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAATACAAATTTGTTCTCAAATGGAAAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCTTTGTTGTG]
[+] EMBL CNS09NVX [CCCGTGCAGTTCGCTTTTCCAGCTGCTTGCGCGAGAAAACATACGAAAAAGTGTCGATCTTTCTCTTTGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCCCGTGACATTCTCTACGAATGCGTTGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCGCCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGACAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTATATCCCGCGCCCGAAGATGCAGGTGTGCGTGCTCGGTGACCAGCAGCATTGCGATGAGGCGAAGGCCAACGACATCCCGTTCATGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGATCAAGCAGATCCCGCGTCTGCTCGGTCCCGGTCTGAACAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCCCAGAACGTGCATCTTGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAACGTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTGTGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAATACAAATTTGTTCTCAAATGGAA ]
[+] EMBL CNS08P4D [ ccGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCCCGTGACATTCTCTACGAATGCGTCGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCGCCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGACAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTACATCCCGCGCCCGAAGATGCAGGTGTGTGTGCTCGGTGATCAGCAGCATTGCGATGAGGCGAAGGCCAACGACATCCCGTTCATGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGTTTAAGCAGATCCCGCGTCTGCTCGGTCCCGGTCTGAACAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCCCAGAGCGTGCATCTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAACGTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTGTGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAATACATATTTGTTCTCAAAAGGACAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCTTTGTTGTG]
[-] EMBL CNS08V4R [ AAGAACAAAAAGCTGGTGAAGAAGCTGGCGAAGAAGTACGACGCCTTCCTGGCCTCCGAGTCGCTGTTAAAGCAGTTCCCGCGTCTGTTCGGTCCCGGTCTGAAAAAGGCCGGCAAGTTCCCGGGTCTGCTCGGCCACGGCGAATCGACGGTGCAGAAGATCGACGAGGTGAAGGCCCCCATCAAGTTCCAGATGAAGAAGGTGCTGTGCCTGTCGGTCGCGGTGGGTCACGTCAAGTTGTCCCCCGACGGGCTGGCCCAGAACGTGCTTTTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAA ]
consensusID : consensus_7560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 773 fasta sequence
[CCGGCCGCGGTGGAAGGTCCGATTCGCGCAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACGTACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAA-----TTCTAACCATACGAAGTGGTGGCAACGGGGAACGAAACGTGCCGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAAACAAGAAACGAAACGAGC-AAAAAAAAAACGATACGTTTCCATATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAAGAAGTACATCCGTGATCTGGATTCGGTGATACAGCGCGCAAAGGATTCCGGCGTACAAAAGATCATGGTCCCCGGGACGTCGGTAAAATCGAGCAAGGAAGCACTACGGCTAACGCGCATCTACCCCGGCATCATCTACTCGACCGCCGGCATACACCCGCACGATTCGAAATCGATCATC]
[+] EMBL BM629749 [CCGGCCGCGGTGGAAGGTCCGATTCGCGCAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACGTACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAA TTCTAACCATACGAAGTGGTGGCAACGGGGAACGAAACGTGCCGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAAACAAGAAACGAAACGAGC AAAAAAAAAACGATACGTTTCCATATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAA ]
[+] EMBL BM650144 [ ccGGTCCGATTCGCGCAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACGTACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAA TTCTAACCATACGGAGTAGTGGCAACGGGGAACGAAACGTGCTGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAGTAGAAACCCCCAACACGAAACAAACAAGAAACGAAACGAGCAAAAAAAAAAACGATACGGTTCCACATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAAGAAGTACATCCGTGATCTGGATTCGGTGATACAGCGCGCAAAGGATTCCGGCGTACAAAAGATCATGGTCCCCGGGACGTCGGTAAAATCGAGCAAGGAAGCACTACGGCTAACGCGCATCTAC ]
[+] EMBL BM640015 [ ccgGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAAGTACGTTCTAACCATACGAAGTGGTGGCAACGGGGAACGAAACGTGCCGTAACCGACACAACATTTGTAAAGAAAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACCGGGCTGGCGGCTGCTGGAATACATTGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTAAGGGTGGAGGGAAACCTGCGTCTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCCAGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAAACAAGAAACGAAACGAGC AAAAAAAAAACGATACGTTTCCATATTCCCCGTATACCAATAAACGACGCGACCGCGACCTACAATCATGGCCAACATGCACGAGGACGAAATGAAGCACTGCTACGAGAACCTGATCGTGGTCGACGTCGGTGCGAACCTCACCAACAAGAAGTACATCCGTGATCTGGATTCGGTGATACAGCGCGCAAAGGATTCCGGCGTACAAAAGATCATGGTCCCCGGGACGTCGGTAAAATCGAGCAAGGAAGCACTACGGCTAACGCGCATCTACCCCGGCATCATCTACTCGACCGCCGGCATACACCCGCACGATTCGAAATCGATCATC]
consensusID : consensus_7560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[GGCAAGAATTCNGCACGATGGAGCACGAGAAGAACTCGGACTTCTACTCGCACAACACGGTGCGCGGTTGTTCGTACTTCTACAGCTACAAGGCGTGCTGTGATTTCCTGCAGAACAATAAGCTGCTCTCCATTATCCGGGCGCACGAGGCGCAGGACGCCGGCTACCGCATGTACCGGAAGAGCTCGACCACCGGCTTCCCCTCGCTGATCACCATCTTCTCCGCGCCGAACTATCTCGACGTCTACAACAACAAGGCGGCGGTGCTCGAGTACGAGAACAACGTCATGAACATCCGGCAGTTCAACTGCTCGNNCCNACGCCGTACTGGCTTCCGGAACTTCAGTGGACNGTCGTTCAGCGTGGTCAGCATGCCGTGNCGTCGGNGAGAAGGGTAGACCGAGG]
[+] EMBL BX468190 [GGCAAGAATTCNGCACGATGGAGCACGAGAAGAACTCGGACTTCTACTCGCACAACACGGTGCGCGGTTGTTCGTACTTCTACAGCTACAAGGCGTGCTGTGATTTCCTGCAGAACAATAAGCTGCTCTCCATTATCCGGGCGCACGAGGCGCAGGACGCCGGCTACCGCATGTACCGGAAGAGCTCGACCACCGGCTTCCCCTCGCTGATCACCATCTTCTCCGCGCCGAACTATCTCGACGTCTACAACAACAAGGCGGCGGTGCTCGAGTACGAGAACAACGTCATGAACATCCGGCAGTTCAACTGCTCGNNCCNACGCCGTACTGGCTTCCGGAACTTCAGTGGACNGTCGTTCAGCGTGGTCAGCATGCCGTGNCGTCGGNGAGAAGGGTAGACCGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7560#0 CCCGTGCAGTTCGCTTTTCCAGCTGCTTGCGCGAGAAAACATACGAAAAAGTGTCGATCT 60
consensus_7560#1 -------------------------------------------CCGGCCGCGGTGGAAGG 17
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 TTCTCTTTGTAATCGTCGACGAGTGCAGTCGCGTCTGGTGCAATGGCGTCTAAAGTGTCC 120
consensus_7560#1 TCCGATTCGCG-----CAACGACACGACGCATACTTGGTGCGGATTTGTGTGCGGATACG 72
consensus_7560#2 -------------------------GGCAAGAATTCNGCACGATGGAGCACGAGAAGAAC 35
* * *
consensus_7560#0 CGTGACATTCTCTACGAAT-GCGTTGCCGAAGTGTTGAAGGGCGCTGAAACGAAGCGCCG 179
consensus_7560#1 TACAGCGTGTTAGAGAGATTGTGCTGCTGCTGCTTGCTTCCTTGCTAAATTCTAACCATA 132
consensus_7560#2 TCGGAC-TTCTACTCGCACAACAC----GGTGCGCGGTTGTTCGTACTTCTACAGCTACA 90
* * * * * * * * *
consensus_7560#0 CCGCTTCCTGGAGACGGTGGAACTCCAGATCGGTCTGAAGAACTACGATCCCCAGAAGGA 239
consensus_7560#1 CGAAGTGGTGGCAACGGGGAA---CGAAACGTGCCGTAACCGACACAACATTTGTAAAGA 189
consensus_7560#2 AGGCGTGCTGTGATTTCCTG-----CAGAACAATAAGCTGCTCTCCATTATCCGGGCGCA 145
* ** * * * *
consensus_7560#0 CAAGCGTTTCTCCGGCACCGTCAAGCTGAAGTATATCCCGCGCCCGAAGATGCAGGTGTG 299
consensus_7560#1 AAAGGTGCCTTTTGCTTCCGTTTGCTTCGTCTTTGACC-GGGCTGGCGGCTGCTGGAATA 248
consensus_7560#2 CGAGGCGC---AGGACGCCGGCTACCGCATGTACCGGAAGAGCTCG--ACCACCGGCTTC 200
** * *** * * ** * * ** *
consensus_7560#0 CGTGCTCGGTGAC-CAGCAGCATTGCGATGAGGCGAAGGCCAA--CGAC-ATCCCGTTCA 355
consensus_7560#1 CAT--TGAGTGAAATAGGAAAAGAACGATCCGCCAGCACGCAATACGACCGTTCTGTGTA 306
consensus_7560#2 CCC--TCGCTGAT-CACCATCTTCTC--CGCGCCGAA--CTATCTCGAC-GTCTACAACA 252
* * *** * * * * * * **** * *
consensus_7560#0 TGGATGCCGAGGCGCTGAAGAAGCTGAACAAGAACAAGAAGCTGGTGAAGAAGC-TGGCG 414
consensus_7560#1 AGGGTGGAGGGAAACCTGCGT--CTGCGTCGGAACATTGTCATCGTAGTAAAGCATTGCC 364
consensus_7560#2 ACAAGGCGGCGGTGCTCGAGTACGAGAAC---AACGTCATGAACATCCGGCAGTTCAACT 309
* * * * * * *** * ** *
consensus_7560#0 AAGAAGTACGACGCCTTCCTGGC-CTCCGAGTCGCTGTTCAAGCAG--ATCCCGCGTCTG 471
consensus_7560#1 AGCAGTAGCAGCAGCAGCTTTGTGCTCCAAAGTGAAATAGAAATACCCAACACGAAACAA 424
consensus_7560#2 GCTCGNNCCNACGCCGTACTGGCTTCCGGAACTTCAGTGGACNGTCGTTCAGCGTGGTCA 369
* * * * * * * * * **
consensus_7560#0 CTCGGTCCCGGTCTGAACAAGGC-----CGGCAAGTTCCCGGGTCTGCTCGGCCACGGCG 526
consensus_7560#1 ACAAGAAACGAAACGAGCAAAAAAAAAACGATACGTTTCCATATTC-CCCGTATACCAAT 483
consensus_7560#2 GCATGCCGTGNCGTCGGNGAGAA-----GGGTAGACCGAGG------------------- 405
* * * * *
consensus_7560#0 AATCGATGGTGCAGAAGATCGACGAGGTGAAGGCCACCAT---CAAGTTCCAGATGAAGA 583
consensus_7560#1 AAACGACGCGACCGC-GACCTACAA--TCATGGCCAACATGCACGAGGACGAAATGAAGC 540
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 AGGTGCTGTGCCTGTC-GGTCGCGGTCGGTCACGTCAAGATGTCGCCCGACGAGCTGGCC 642
consensus_7560#1 AC-TGCTACGAGAACCTGATCGTGGTCG---ACGTCGGTGCGAACCTCACCAA------- 589
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 CAGAACGTGCATCTGGCCATCAACTTCCTGGTGTCGCTGCTGAAGAAGCACTGGCAGAAC 702
consensus_7560#1 CAAGAAGTACATCCG--------TGATCTGGATTCGGTGATAC---AGCGCGCAAAGGAT 638
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 GTCCGCTCGCTCCACATCAAATCGTCCATGGGTGCCGCCCAGCGACTGTACTAAGGTGTG 762
consensus_7560#1 TCCGGCGTACAAAAGATCA--TGGTCCCCGGG---------ACGTCGGTAAAATCGAGCA 687
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 TGGGTGTGTGGTGGGTAATGCGTTTATTTGCATTATCTGAGGCAATTTAACTTGTGAAAT 822
consensus_7560#1 AGGAAGCACTACGGCTAACGCG--CATCTACCCCGGCATCATCTACTCGACCGCCGGCAT 745
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 ACAA--ATTTGTTCTCAAATGGAAAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAGGGC 880
consensus_7560#1 ACACCCGCACGATTCGAAATCGATCATC-------------------------------- 773
consensus_7560#2 ------------------------------------------------------------
consensus_7560#0 CCTTTGTTGTG 891
consensus_7560#1 -----------
consensus_7560#2 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||