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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1300 fasta sequence
[CCGCCCACGCGTCCGTGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTTTACAGCTGTGACTATCGGCGATGCATCAAAATGTTGGAAGAAATTCTGAAAAACGATCCCTATCACAAACGATCGCTTACGGTGCAGATTGGATGTTTGATGGAGATGAAAGACTTCAATCGGCTTTTCTATGTTGCTCACAAGCTTGTTGATTTTTATCCGGACGATGCCATCTCATGGTATGCCGTGGGGTGCTACTATGATTTGATCGGTAAAAGTGATCCAGCGCGTCGTTATCTTTCCAAAGCAACCTCTCTCGACCGCCTGTACGGTCCGGCTTGGTTGGCATACGGCCATTCGTTCGCAAAGGAAAACGAGCATGATCAGGCAATGGCAGCTTATTTTAAGGCCACACAACTGATGCGCGGATGCCATCTGCCACTGCTGTACATCGGAGTTGAATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGG-AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTGAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAAC-GGGATGACGTGTTTACCA-CTACTGTACTGAAGTA-CGTTATCGAAGATCTGACAGAGGTGCAATCGCTTCCTTTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAGCAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGTCACCGAAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCAATTTTGACGAATGGTACACAAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGAGCATTGATATTTAGATTGAAGGCAAACAAGCTTTGGAACGGTTTTGATAAAATAAGCTCTATTTGAATAATAAGGGTATACAAATTTGCAAAATTGGCATCAGCTACTTTACTGT]
[+] EMBL BM606908 [CCGCCCACGCGTCCGTGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTTTACAGCTGTGACTATCGGCGATGCATCAAAATGTTGGAAGAAATTCTGAAAAACGATCCCTATCACAAACGATCGCTTACGGTGCAGATTGGATGTTTGATGGAGATGAAAGACTTCAATCGGCTTTTCTATGTTGCTCACAAGCTTGTTGATTTTTATCCGGACGATGCCATCTCATGGTATGCCGTGGGGTGCTACTATGATTTGATCGGTAAAAGTGATCCAGCGCGTCGTTATCTTTCCAAAGCAACCTCTCTCGACCGCCTGTACGGTCCGGCTTGGTTGGCATACGGCCATTCGTTCGCAAAGGAAAACGAGCATGATCAGGCAATGGCAGCTTATTTTAAGGCCACACAACTGATGCGCGGATGCCATCTGCCACTGCTGTACATCGGAGTTGAATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGGCAGCCATT ]
[+] EMBL BM597578 [ ccGGAAAACGAGCATGATCAGGCAATGGCAGCTTATTTTAAGGCCACACAACTGATGCGCGGATGCCATCTGCCACTGCTGTACATCGGAGTTGAATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGG AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTGAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAACGGGGATGACGTGTTTACCACCTACTGTACTGAAGTACCGTTATCGAAGATCTGACA ]
[+] EMBL BX625172 [ ATGTCCATCGCTCCCCTGGACGTGTTCGTTTTGCACGAGCTAGGCGTGATCAAGTACGAGTGTGAGCATTACGAATGTGCAGAGGAAGTTTTCCGCAGCACGTTGGAAATGGTGCGCAATATGGTGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGG AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTAAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAAC GGGATGACGTGTTTACCA CTACTGTACTGAAGTA CGTTATCGAAGATCTGACAGAGGTGCAATCGCTTCCTTTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAGCAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGTCACCGAAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCAATTTTGACGAATGGTACACAAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGAGCATTGA ]
[-] EMBL CNS08LM1 [ GCAATATGGTGAAGCATAATAATGAACAGTTGACCGCCCGGTGGG AGCCATTGTTGAACAATTTGGGACACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTTCTCTGAAGCCGTTAAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGGGTCAATTATACGATGCAGTAGATTCATTCCACAAAAGTTTGTCTCTGAAAC GGGATGACGTGTTTACCA CTACTGTACTGAAGTA CGTTATCGAAGATCTGACAGAGGTGCAATCGCTTCCATTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAGCAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGCCACCGAAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCAATTTTGACGAATGGTACACGAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGAGCATTGATATTTAGATTGAAGGCAAACAAGCTTTGGAACGGTTTTGATAAAATAAGCTCTATTTGAATAATAAGGGTATACAAATTTGCAAAATTGGCATCAGCTACTTTACTGT]
consensusID : consensus_7592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1154 fasta sequence
[CCGGCTGGAACGATGGAACAAGAGATGATCGACATTGAAAGTTATCGTAAAACGGTGAAAAATTTTATTGATTTGCGTCGGTACCAGACAGCACTGTTTTGGGCCGAAAAAGTAACAGTTCTAAGCAATGGCGATCCGCGTGATGTTTACTGGGAGGCGCAGTGTATGTTTCTGCTGCGGGAATTTCACCGGGCAGCGCACACCATTCGAAGCCGATCGCTGGAGAAAACGAACCTGCTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGCACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAACTGGATCACATTCGTCCAGCATGAAGGACGATTCTACGACGGACGAGAGCTACGACGGAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTTTTGAAGGGCAAAATACTGGAGTCGATGGATAATCGCAGCCTGGCAATGGACTGTTATGTTCAAGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACATGCTGATGGCTTGGGAGGAGAAAGAATTGATGCAACATATTCCAATGGCGCA-CAGTGCACAGAGCCAGAAAGAAAGGTTCTCAAGCGTCTGTACGAGAGTAAGCTGAAGAAATATTACGAATCGATCGCAATGCAAACTAACCTGGATGATCCACCCGTATCTTCGATGAACACTAGTTTATGGCATGAATTAAAGGAGAAGATGAAAAATTGTAAAAACAACGAGACAAGCAAATCATCAGTATCCAAAAGTTTCACTCCAGCTCCCCGCACAAAACAAAAGCAGAGGGAGATAATGTCACCGGCAAACAAAATTCTGGAGGACCTTAAAAACAATCCCTCCTATCTGATTCATACATCGTTGACTAGAGCATCACTGCTTGGTACAAGCCTAACAGGTGGCTCAACAATGCTCAGCGTAGGCGGGGCAAATAATTCTCGGCAGGAGACGCCTTTTAGAATCAATCGTCCCAAGCCAAATCCTGGCGCATCGGTAGTTTCGTACGAACAGTGCATGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTT]
[+] EMBL BM576735 [CCGGCTGGAACGATGGAACAAGAGATGATCGACATTGAAAGTTATCGTAAAACGGTGAAAAATTTTATTGATTTGCGTCGGTACCAGACAGCACTGTTTTGGGCCGAAAAAGTAACAGTTCTAAGCAATGGCGATCCGCGTGATGTTTACTGGGAGGCGCAGTGTATGTTTCTGCTGCGGGAATTTCACCGGGCAGCGCACACCATTCGAAGCCGATCGCTGGAGAAAACGAACCTGCTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGCACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAACTGGATCACATTCGTCCAGCATGAAGGACGATTCTACGACGGACGAGAGCTACGACGGAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTTTTGAAGGGCAAAATACTGGAGTCGATGGATAATCGCAGCCTGGCAATGGACTGTTATGTTCAAGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACATGCTGATGGCTTGGGAGGAGAA ]
[+] EMBL CNS08LM0 [ ttTGATGCGGGAATATAACCGGGCAGCGCACACCATTCGAAGCCGATCGCTGGAGAAAACGAACCTGTTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGCACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAACTGGTTCACATTCGTCCAGCATGAAGGACGATTCTACAACGGACGAGAGCTACGACGGAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTTTTGAAGGGCAAAATACTGGAGTCAATGGATAATCGCAGCCTGGCAATGGACTGTTATGTTCAAGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACATGCTGATGGCTTGGGAGGAGAAAGAATTGATGCAACATATTCCAATGGCGCA CAGTGCACAGAGCCAGAAAGAAAGGTTCTCAAGCGTCTGTACGAGAGTAAGCTGAAGAAATATTACGAATCGATCGCAATGCAAACTAACCTGGATGAT ]
[+] EMBL BM652744 [ cCGCAGCAGTGCACAGAGCCAGAAAGAAAGGTTCTCAAGCGTCTGTACGAGAGTAAGCTGAAGAAATATTACGAATCGATCGCTATGCAAACCAACCTGGATGATCCACCCGTATCTTCGATGAACACTAGTTTATGGCATGAATTAAAGGAGAAGATGAAAAATTGTAAAAACAACGAGACAAGCAAATCATCAGTATCCAAAAGTTTCACTCCAGCTCCCCGCACAAAACAAAAGCAGAGGGAGATAATGTCACCGGCAAACAAAATTCTGGAGGACCTTAAAAACAATCCCTCCTATCTGATTCATACATCGTTGACTAGAGCATCACTGCTTGGTACAAGCCTAACAGGTGGCTCAACAATGCTCAGCGTAGGCGGGGCAAATAATTCTCGGCAGGAGACGCCTTTTAGAATCAATCGTCCCAAGCCAAATCCTGGCGCATCGGTAGTTTCGTACGAACAGTGCATGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGAGCTGAACAGTATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7592#0 -CCGCCCACGCGTCCGTGGAAAAGCTTGAATCAAGCATAGACCTAATGATCGCACGA-GC 58
consensus_7592#1 CCGGCTGGAACGATGGAACAAGAGAT--GATCGACATTGAAAGTTATCGTAAAACGGTGA 58
* ** ** * ** ** * *** * * * * ** * *** *
consensus_7592#0 TGAACAGTATT--TTTACAGCTGTGACTATCGGCGATGCATCAAAATGTTGGAAGAAATT 116
consensus_7592#1 AAAATTTTATTGATTTGCGTCGGTACCAGACAGCACTGTTTTGGGCCGA-AAAAGTAACA 117
** **** *** * * ** * * ** ** * * *** **
consensus_7592#0 CTGAAAAACGATCCCTATCACAAACGATCGCTTACGGTGCAGATTGGATGTTTGATGGAG 176
consensus_7592#1 GTTCTAAGCAATGGCGATC-CGCGTGAT-GTTTACTG-GGAGGCGCAGTGTATGTTTCTG 174
* ** * ** * *** * *** * **** * * ** *** ** * *
consensus_7592#0 ATGAAAGACTTCAATCGGCTTTTCTATGTTGCTCACAAGCTTGTTGATTTTTATCCGGAC 236
consensus_7592#1 CTGCGGGAATTTCACCGGGCAGCGCACACCATTCG-AAGCCGATCGCTGGAGAAAACGAA 233
** ** ** * *** * ** **** * * * * **
consensus_7592#0 GATGCCATCTCATGGTATG-CCGTGGGGTGCTACTATGATTTGATCGG-TAAAAGTGATC 294
consensus_7592#1 CCTGCTGTGTCACTATTTGGCCGCAGAGTGCTTGAATGAGGCGAAGGAATATCAATCAGC 293
*** * *** * ** *** * ***** **** ** * ** * * * *
consensus_7592#0 CAGCGCGTCGTTATCTTTCCAAAGCAACCTCTCTCGACCGCCTGTACGGTCCGGCTTGGT 354
consensus_7592#1 ACTGGAGATCCTAAATTCGGTGGACTGCGAAACGCTATCGTATGCATTAAGTGGCAAAAC 353
* * ** ** * * * * * ** ** * ***
consensus_7592#0 TGGCATACGGCCATTCGTTCGCAAAGGAAAACGAGCATG-ATCAGGCAATGGCAGCT-TA 412
consensus_7592#1 TGGATCA----CATTCGTCCAGCATGAAGGACGATTCTACGACGGACGAGAGCTACGACG 409
*** * ******* * * * * **** * * * * * ** *
consensus_7592#0 TTTTAAGGCCACACAACTGATGCGCGGATGCCATC-TGCCACTGCTGTACATCGGAGTTG 471
consensus_7592#1 GAAGCATGTATGAGGATCCGTTCAAAAACGATATCATTGCATCGGTGTATTTT----TTG 465
* * * * * * * * *** * ** * **** * ***
consensus_7592#0 AATGTGGGTTGACCAAAAACCATGCAATGGCTGAAAAATTTTTCTACCAAGCTATGTCCA 531
consensus_7592#1 AAGGGCAAAATACTGGAGTCGATG-GATAATCGCAGCCTGGCAATGGACTGTTATGTTCA 524
** * ** * * *** ** * * * * * ***** **
consensus_7592#0 T-CGCTCCCCTGGACGTGTTCGTTTTGC-ACGAGCTAGGCGTGATCAAGTACGAGTGTGA 589
consensus_7592#1 AGCGCTACACAAATCGGTTTACTGCTCCGAAGCGCTAGATGCTTTGGTGCAACACGACAT 584
**** * * ** ** * * * * * ***** * * * * *
consensus_7592#0 GCATTACGAATGTGCAGAGGAAGTTTTC-CGCAGCACGTTGGAAATGGTGCGCAATATGG 648
consensus_7592#1 GCTGATGGCTTGGGAGGAGAAAGAATTGATGCAACATATTCCAA-TGGCGCACAGTGCAC 643
** * ** * *** *** ** *** ** ** ** *** ** ** *
consensus_7592#0 TGAAGCAGAATAATGAACAGTTGACCGCCCGGTGGGAGCCATTGTTGAACAATTTGGGAC 708
consensus_7592#1 AGAGCCAGAAAGAAAGGTTCTCAAGCGTCTG-TACGAG---------AGTAAGCTGAAGA 693
** ***** * * * ** * * * *** * ** **
consensus_7592#0 ACTGTTGCCGGAAAAATAAAAAGTACGAGGAAGCTCTGGAGTTCCACCGATGGGCTCTTT 768
consensus_7592#1 AATATTAC-GAATCGATCGCAA-TGCAAACTAACCTGGATGATCCACCCGTA---TCTTC 748
* * ** * * * ** ** * * * * * * * ****** * ****
consensus_7592#0 CTCTGAAGCCGTTGAATGCTGCCACGTACACAGCTATCGGATTTGTGCAAGCGTTAATGG 828
consensus_7592#1 GATGAACACTAGTTTATGGCATGAATTAAAGGAGAAGATGAAAAATTGTAAAAACAACGA 808
* * * *** * ** * * ** * * ** *
consensus_7592#0 GTCAATTATACGATGCAGTAGATTCA--TTCCACAAAAGTTTGTCTC-TGAAACGGGATG 885
consensus_7592#1 GACAAGCAAATCAT-CAGTATCCAAAAGTTTCACTCCAGCTCCCCGCACAAAACAAAAGC 867
* *** * * ** ***** * ** *** ** * * * **** *
consensus_7592#0 ACGTGTTTACCACTACTGTACTGAAGTACGTTATCGAAGATCTGACAGAGGTGCAATCGC 945
consensus_7592#1 AGAGGGAGATAATGTCACCGGCAAACAAAATTCTGGAGGACCTTAAAAA----CAATC-C 922
* * * * * ** * ** * ** ** ** * * * ***** *
consensus_7592#0 TTCCTTTCTATGCTGCGGAGGATGCCGAGGAAGATTGCGGCGATAAGGAAGGAGATCAAG 1005
consensus_7592#1 CTCCTATCT--GATTCATACATCGTTGACTAGAGCATCACTGCTTGGTAC--AAGCCTAA 978
**** *** * * * * * ** * * * * * * * * *
consensus_7592#0 CAGAAAAGTCTAGGGACGAGAGTAAAACTTTAGACAAACTGAATACTTGCAATGTCACCG 1065
consensus_7592#1 CAGGTGGCTC----AACAATGCTCAG--CGTAGGCGGGGCAAATAATT-------CTCGG 1025
*** ** ** * * * *** * **** ** * * *
consensus_7592#0 AAGGTGACAGCGAAGATGTTAGAGATAGTGCTCCACGACCTACCTTGCGCATGCAACTCA 1125
consensus_7592#1 CAGGAGACGCC-----TTTTAGAATCAATCGTCCCAAGCCAAATCCTGGCGCATCGGTAG 1080
*** *** * * ***** * * *** ** * ** *
consensus_7592#0 ATTTTGACGAATGGTACACAAAAACGTCCCCCATGAGCGATACTAGTGCGGATGATATGA 1185
consensus_7592#1 TTTCGTACGAACAGTGCATGGAAAAG-CTTGAATCAAGCATAGACCTAATGATCGCACGA 1139
** ***** ** ** *** * * ** * *** * *** * **
consensus_7592#0 GC--ATTGATATTTAGATTGAAGGCAAACAAGCTTTGGAACGGTTTTGATAAAATAAGCT 1243
consensus_7592#1 GCTGAACAGTATTTT--------------------------------------------- 1154
** * *****
consensus_7592#0 CTATTTGAATAATAAGGGTATACAAATTTGCAAAATTGGCATCAGCTACTTTACTGT 1300
consensus_7592#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||