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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 906 fasta sequence
[CGAGCGAACAAACATGACATTACATGAAAGTGGCGAAAACT---A--TCGTAGTGC-ACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAA-GTGCGCCCAGTGGGC-CCGGTGCTGCGTCA-CTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA]
[+] EMBL CNS0998S [ GCGAAAACT A TCGTAGTGC ACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAA GTGCGCCCAGTGGGC CCGGTGCTGCGTCA CTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAAAGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAACGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA]
[+] EMBL AL932616 [cgagcgaacaaacatgacattacatgaaagtgGCGAAAACTTAAATTTCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAG ]
[-] EMBL CNS0998T [ ATACCGACGAGCCACAAACCGAGGGCT GCGGTGCCAAAGCCGACAAGAAGCAGGAGGAAAATGCCGCCCCCGCCACCGAGAACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGAAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGTTCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGTTCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACAACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGGTG GCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAG TGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGAGACGACGCAGACTGATTACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTTTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTT GGGGGGAAAGCCCACAGGCAAGGAAGAGAAATAAACTGGCAGACAAACAATAATTACCCAGCCGTTAGTGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGAAATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTT ]
consensusID : consensus_7617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 723 fasta sequence
[CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAAGCC]
[+] EMBL BM615605 [CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGA ]
[+] EMBL BX615741 [ TAGCAATGAGTGGCGAAAACTATCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGC ]
[+] EMBL BX618370 [ TCGTAGTGCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAACCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACCGAGGACAGCTTGCCGTAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGACCAGTGGGCGAAGGGCACGCTGCCGGAATAGCTGGAAGCCCTGATCTACCGCCTGTCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTGTGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTCCTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTGTAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGGCCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGGAAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGAAAGCC]
[+] EMBL BX614970 [ GGAGATGATCGGCCAGATACGGACCGTGTTCGATGGGTACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTGTACGAACAGTGGGCGAAGGGCACGCTGCGGGAACAGCTGGAAGCTTTGATCTACTGCTTGTCGGCTGCTATGCTCGATGAGGACGAAGTGCGTGCGAACGTGCTGCACTGCACGATCGTGTGTGATCACGCTGGCAAGTGCGCATAGTGGGCGCTGGgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7617#0 ----------CGAGCGAACAAACATGAC-ATTACATGAAAGTGGCGAAAACTATCGTAGT 49
consensus_7617#1 CCGATCCGAGCGAACCAAAAACCATGACCATTAGCAATGAGTGGCGAAAACTATCGTAGT 60
*** * ** ** ****** **** *********************
consensus_7617#0 GCA-CGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA 108
consensus_7617#1 GCAACGAAATCACACGATCCGGGCTGGAACGATCCGCCCCCGATACCGACGAGCCACAAA 120
*** ********************************************************
consensus_7617#0 CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC 168
consensus_7617#1 CCGAGGGCTGGCGGTGCCAAAGCCGACAAGAAGCAGGAGGAGAATGCCGCCCCCGCCACC 180
************************************************************
consensus_7617#0 GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG 228
consensus_7617#1 GAGGACAGCTTGCCGGAGCGGGAGGAGATGATCGGCCAGATACGGACCGTGTTCGATGGG 240
************************************************************
consensus_7617#0 TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG 288
consensus_7617#1 TACGTGCAGCAGCTGGAGGAGTCACGCCGGGCGAATGTGCAAAAGCGTATCGATCTGCTG 300
************************************************************
consensus_7617#0 TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG 348
consensus_7617#1 TACGACCAGTGGGCGAAGGGCACGCTGCCGGAACAGCTGGAAGCCCTGATCTACCGCCTG 360
************************************************************
consensus_7617#0 TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG 408
consensus_7617#1 TCCGCTGCCCTGCTCGATGAGGACGACGTGCGTGCGAACGTGCTGCACCGCACGATCGTG 420
************************************************************
consensus_7617#0 TGTGATCACGCCGGCAAGTGCGCCCAGTGGGC-CCGGTGCTGCGTCA-CTGATCTTTGTC 466
consensus_7617#1 TGTGATCACGCCGGCAAGTGCGCCCAGTGGGCGCCGGTGCTGCGTCAGCTGATCTTTGTC 480
******************************** ************** ************
consensus_7617#0 CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG 526
consensus_7617#1 CTGCAGCTGCGCAACGAGCAGACGAAACCCGTCGTCGCCGACCAGATCGTGCAGCCGCTG 540
************************************************************
consensus_7617#0 TAGCGGGAAAG-------------AGACGACGCAGACTGATAACGGGCAGGGATGAATGG 573
consensus_7617#1 TAGCGGGAAAGGCAGCCGTGAGAGAGACGACGCAGACTGATAACGGGCAGGGATGAATGG 600
*********** ************************************
consensus_7617#0 CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG 633
consensus_7617#1 CCCCCAGCTCAAGCCGGTGAGATCAGGAAGTATGTTTAATTGTTTCACGTATAGGATAGG 660
************************************************************
consensus_7617#0 AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGGGAA 693
consensus_7617#1 AAAAGTACATTATGATGCAGAGCATGATATAGGCATATAGTATGCAATTTTGGGGGG-AA 719
********************************************************* **
consensus_7617#0 AGCCCACAGGCAAGGAAGAGAAATACACTGGCAGACAAACAATAATTACCCAGCCGTTAG 753
consensus_7617#1 AGCC-------------------------------------------------------- 723
****
consensus_7617#0 TGCGAAATGCGAAGAGTGAAAGAATTAGAGTGTCGAAGCGGTCTCCGCAATAGATGACGA 813
consensus_7617#1 ------------------------------------------------------------
consensus_7617#0 AATGTTCTATTCCAGCGAACAAAATTACAGTTGACTGAGCAAACTGGACGAGCTTGCCAA 873
consensus_7617#1 ------------------------------------------------------------
consensus_7617#0 CGACAGTACCCTTTTCCAAAAAAAAAAAAAAAA 906
consensus_7617#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||