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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1415 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAATTTGTGCGAGCTGCTTCACTTTCTCCTGCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCACCAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGGGTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAA-TATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAG-CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG-AGCGGGAACAAGCGAATGC-GACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAG-CGATTCTGAG-ATCGAGCGCAGGCGCAACCTGCTGAAAGCGAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAACCAAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAGCAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGCTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGTGCGCAACAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACGACGTGTACAAGCAGGACTTCTCGGCCCCGACGCTGGAGGACCATTTCGACAAGACGATCCTGCCGAAGGTGATGCAGGTGAAGAACTTTGGCCGTGCGGTCGCACCAAGTACACGCATCTGGTCGACCAGGACACCGCCAAGTTCGACTCGC]
[+] EMBL BM614654 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAATTTGTGCGAGCTGCTTCACTTTCTCCTGCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCACCAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGGGTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAA TATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAG CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG AGCGGGAACAAGCGAATGC GACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAG CGATTCTGAG ATCGAGCGCAGGCGCAACC ]
[+] EMBL BM611323 [ ccgagTTTTGCGAGTTGCTTCACTTTCTCCTGCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCACCAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGGGTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAA TATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAG CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTCGAACGAGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG AGCGGGAACAAGCGAATGC GACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAGCCGATTCCGAGAATCGAGCG ]
[+] EMBL BX619156 [ CAGAANTATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAGNCACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATGAAGCGGGAACAAGCGAATGCNGACCTCC CCGGCc ]
[+] EMBL CNS09FH4 [ AGAGTCGGAAGACGACGATTTCCTGGAG CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAGTCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG AGCGGGAACAAGCGAATGC CACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAG CGATTCTGAG ATCGAGCGCAGGCGCAACCTGCTGAAAGCGAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAACCAAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAA ]
[-] EMBL CNS09FH5 [ TGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCCGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAAGCCAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAGCAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGCTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGTGCGCAACAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACGACGTGTACAAGCAGGACTTCTCGGCCCCGACGCTGGAGGACCATTTCGACAAGACGATCCTGCCGAAGGTGATGCAGGTGAAGAACTTTGGCCGTGCGGTCGCACCAAGTACACGCATCTGGTCGACCAGGACACCGCCAAGTTCGACTCGC]
consensusID : consensus_7635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence
[CAGAATCGGCCACGAGGATCGAGCGCAGGCGCAACCTGCTGAAAGCAAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGAGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAAGCCAACCGCCAGAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAACAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGTTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGCTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGCTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGCTGCGCAAGCAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACCGACGTGTACAAGCAGGACTTCTCGGGCCCGGACGCTTGAGGGACCATTTTCGACAAGACGATCCTNCCGAAAGGTGATGCCAGGTGAGAAACTTTGGGCGGTGCGGTCAGGACCAAAGGTNCACNCGGCCATTTCTGGGTTCGGANACACANGGGGACACACCGGGACCCAAAGTTTCCGGAACTCTTNGGCCGCAGTGCGGGTTAAGCGGACACAACAGGNGCCAAACTAGGCGNAGCNANTTCTTTCCCCACTCCCCGANAGCTGGGACCACGGNTGGGCATGAANGNCAGGGGTTTCCGGNAAAAGCCNT]
[+] EMBL BX467386 [CAGAATCGGCCACGAGGATCGAGCGCAGGCGCAACCTGCTGAAAGCAAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGAGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAAGCCAACCGCCAGAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAACAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGTTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGCTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGCTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGCTGCGCAAGCAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACCGACGTGTACAAGCAGGACTTCTCGGGCCCGGACGCTTGAGGGACCATTTTCGACAAGACGATCCTNCCGAAAGGTGATGCCAGGTGAGAAACTTTGGGCGGTGCGGTCAGGACCAAAGGTNCACNCGGCCATTTCTGGGTTCGGANACACANGGGGACACACCGGGACCCAAAGTTTCCGGAACTCTTNGGCCGCAGTGCGGGTTAAGCGGACACAACAGGNGCCAAACTAGGCGNAGCNANTTCTTTCCCCACTCCCCGANAGCTGGGACCACGGNTGGGCATGAANGNCAGGGGTTTCCGGNAAAAGCCNT]
consensusID : consensus_7635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 86 fasta sequence
[CCCNNTTTTCAGTGACGAAGAGTCGGNAGACGANGATTCCTGAGCACGTCGAGCGAACGAAGAGCAGCAGCACGGGAAGAATCAGA]
[+] EMBL AL929982 [CCCNNTTTTCAGTGACGAAGAGTCGGNAGACGANGATTCCTGAGCACGTCGAGCGAACGAAGAGCAGCAGCACGGGAAGAATCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7635#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAATTTGTGCGAGCTGCTTCACTTTCTCCT 60
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 -------------------------------------------------------CAGAA 5
consensus_7635#0 GCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCAC 120
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TCGGCCACGAGGATCGAGCGCAGGCGCAACCTGCTGAAAGCAAAAATGCTGCAGCAGAAG 65
consensus_7635#0 CAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGG 180
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 CAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAA 125
consensus_7635#0 GTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAAT 240
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 GAGTCGGAGAGCTCCGAGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGG 185
consensus_7635#0 ATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAGCACCGTC 300
consensus_7635#2 -------CCCNNTTTTCAGTGACGAAGAGTCGGNAGACGANGATTCCT--GAGCAC-GTC 50
consensus_7635#1 CTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAA--AAGGAGCGCG 243
* *** ** ***** *** ** * *
consensus_7635#0 GAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATG 360
consensus_7635#2 GAGCGAACGAAGAGCAGCAGCA-CGGGAAGAATCAGA----------------------- 86
consensus_7635#1 AAGCCAACCGCCAGAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGA 303
*** *** ** ****** * * ** ** *
consensus_7635#0 TCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGG 420
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 AACAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGTTGGAAAAGACGAAGGTTG 363
consensus_7635#0 AACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACG 480
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 AAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATG 423
consensus_7635#0 AAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG 540
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 AGGCGTGGAAGCTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGA 483
consensus_7635#0 AGCGGGAACAAGCGAATGCGACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCG 600
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TCGAGAAGGAAAAGCAGGAAATCGAGCGGCTGCGCAACATGACGGAAGAGGAACGCCGGC 543
consensus_7635#0 AATCGGAGGCCGAGCTGAGCGATTCTGAGATCGAGCGCAGGCGCAACCTGCTGAAAGCGA 660
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 AGGAGCTGCGCAAGCAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAG 603
consensus_7635#0 AAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAG 720
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACCGACGTGTA 663
consensus_7635#0 GCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACG 780
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 CAAGCAGGACTTCTCGGGCCCGGACGCTTGAGGGACCATTTTCGACAAGACGATCCTNCC 723
consensus_7635#0 AGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCA 840
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 GAAAGGTGATGCCAGGTGAGAAACTTTGGGCGGTGCGGTCAGGACCAAAGGTNCACNCGG 783
consensus_7635#0 TTGAAAAGGAGCGCGAACCAAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAAAAGATGG 900
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 CCATTTCTGGGTTCGGANACACANGGGGACACACCGGGACCCAAAGTTTCCGGAACTCTT 843
consensus_7635#0 CCAAAGAACGACGGAAGCAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGCTGG 960
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 NGGCCGCAGTGCGGGTTAAGCGGACACAACAGGNGCCAAACTAGGCGNAGCNANTTCTTT 903
consensus_7635#0 AAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACG 1020
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 CCCCACTCCCCGANAGCTGGGACCACGGNTGGGCATGAANGNCAGGGGTTTCCGGNAAAA 963
consensus_7635#0 ACGAGGTGGAGTATGAGGCGTGGAAGTGCGCGAACTGAAACGCATCAAGCGGGACCGCGA 1080
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 GCCNT------------------------------------------------------- 968
consensus_7635#0 AGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGTGCGCAACATGACGGAA 1140
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ------------------------------------------------------------
consensus_7635#0 GAGGAACGCCGGCAGGAGTGCGCAACAACCCGAAACAGGTGACGAACAAGAACGTGAAGG 1200
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ------------------------------------------------------------
consensus_7635#0 GCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGG 1260
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ------------------------------------------------------------
consensus_7635#0 ACGACGTGTACAAGCAGGACTTCTCGGCCCCGACGCTGGAGGACCATTTCGACAAGACGA 1320
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ------------------------------------------------------------
consensus_7635#0 TCCTGCCGAAGGTGATGCAGGTGAAGAACTTTGGCCGTGCGGTCGCACCAAGTACACGCA 1380
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ------------------------------------------------------------
consensus_7635#0 TCTGGTCGACCAGGACACCGCCAAGTTCGACTCGC 1415
consensus_7635#2 -----------------------------------
consensus_7635#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||