These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1415 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAATTTGTGCGAGCTGCTTCACTTTCTCCTGCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCACCAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGGGTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAA-TATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAG-CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG-AGCGGGAACAAGCGAATGC-GACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAG-CGATTCTGAG-ATCGAGCGCAGGCGCAACCTGCTGAAAGCGAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAACCAAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAGCAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGCTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGTGCGCAACAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACGACGTGTACAAGCAGGACTTCTCGGCCCCGACGCTGGAGGACCATTTCGACAAGACGATCCTGCCGAAGGTGATGCAGGTGAAGAACTTTGGCCGTGCGGTCGCACCAAGTACACGCATCTGGTCGACCAGGACACCGCCAAGTTCGACTCGC] [+] EMBL BM614654 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAATTTGTGCGAGCTGCTTCACTTTCTCCTGCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCACCAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGGGTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAA TATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAG CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG AGCGGGAACAAGCGAATGC GACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAG CGATTCTGAG ATCGAGCGCAGGCGCAACC ] [+] EMBL BM611323 [ ccgagTTTTGCGAGTTGCTTCACTTTCTCCTGCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCACCAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGGGTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAA TATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAG CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTCGAACGAGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG AGCGGGAACAAGCGAATGC GACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAGCCGATTCCGAGAATCGAGCG ] [+] EMBL BX619156 [ CAGAANTATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAGNCACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATGAAGCGGGAACAAGCGAATGCNGACCTCC CCGGCc ] [+] EMBL CNS09FH4 [ AGAGTCGGAAGACGACGATTTCCTGGAG CACCGTCGAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATGTCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGGAACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAGTCGGACGAAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG AGCGGGAACAAGCGAATGC CACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCGAATCGGAGGCCGAGCTGAG CGATTCTGAG ATCGAGCGCAGGCGCAACCTGCTGAAAGCGAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAACCAAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAA ] [-] EMBL CNS09FH5 [ TGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCCGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAAGCCAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAGCAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGCTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGTGCGCAACAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACGACGTGTACAAGCAGGACTTCTCGGCCCCGACGCTGGAGGACCATTTCGACAAGACGATCCTGCCGAAGGTGATGCAGGTGAAGAACTTTGGCCGTGCGGTCGCACCAAGTACACGCATCTGGTCGACCAGGACACCGCCAAGTTCGACTCGC] consensusID : consensus_7635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence [CAGAATCGGCCACGAGGATCGAGCGCAGGCGCAACCTGCTGAAAGCAAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGAGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAAGCCAACCGCCAGAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAACAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGTTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGCTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGCTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGCTGCGCAAGCAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACCGACGTGTACAAGCAGGACTTCTCGGGCCCGGACGCTTGAGGGACCATTTTCGACAAGACGATCCTNCCGAAAGGTGATGCCAGGTGAGAAACTTTGGGCGGTGCGGTCAGGACCAAAGGTNCACNCGGCCATTTCTGGGTTCGGANACACANGGGGACACACCGGGACCCAAAGTTTCCGGAACTCTTNGGCCGCAGTGCGGGTTAAGCGGACACAACAGGNGCCAAACTAGGCGNAGCNANTTCTTTCCCCACTCCCCGANAGCTGGGACCACGGNTGGGCATGAANGNCAGGGGTTTCCGGNAAAAGCCNT] [+] EMBL BX467386 [CAGAATCGGCCACGAGGATCGAGCGCAGGCGCAACCTGCTGAAAGCAAAAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGAGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAAAAGGAGCGCGAAGCCAACCGCCAGAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGAAACAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGTTGGAAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATGAGGCGTGGAAGCTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGCTGCGCAACATGACGGAAGAGGAACGCCGGCAGGAGCTGCGCAAGCAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACCGACGTGTACAAGCAGGACTTCTCGGGCCCGGACGCTTGAGGGACCATTTTCGACAAGACGATCCTNCCGAAAGGTGATGCCAGGTGAGAAACTTTGGGCGGTGCGGTCAGGACCAAAGGTNCACNCGGCCATTTCTGGGTTCGGANACACANGGGGACACACCGGGACCCAAAGTTTCCGGAACTCTTNGGCCGCAGTGCGGGTTAAGCGGACACAACAGGNGCCAAACTAGGCGNAGCNANTTCTTTCCCCACTCCCCGANAGCTGGGACCACGGNTGGGCATGAANGNCAGGGGTTTCCGGNAAAAGCCNT] consensusID : consensus_7635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 86 fasta sequence [CCCNNTTTTCAGTGACGAAGAGTCGGNAGACGANGATTCCTGAGCACGTCGAGCGAACGAAGAGCAGCAGCACGGGAAGAATCAGA] [+] EMBL AL929982 [CCCNNTTTTCAGTGACGAAGAGTCGGNAGACGANGATTCCTGAGCACGTCGAGCGAACGAAGAGCAGCAGCACGGGAAGAATCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7635#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAATTTGTGCGAGCTGCTTCACTTTCTCCT 60 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 -------------------------------------------------------CAGAA 5 consensus_7635#0 GCACAAAAACTCATTTTTTGGTATCGTAAGCAACAGAAAACAGACTAAACATGAGTCCAC 120 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TCGGCCACGAGGATCGAGCGCAGGCGCAACCTGCTGAAAGCAAAAATGCTGCAGCAGAAG 65 consensus_7635#0 CAACTACACAGTACGGTATACAAAGTACCGCCGGTGCAGTTCCAGTGAAAAACACAAAGG 180 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 CAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAGGCATGTCGGATTCGGAA 125 consensus_7635#0 GTGAAATATCTATGCAAAAGGTGAAAGTGCATCGATACGTGTCAGGAAAACGGCCAGAAT 240 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 GAGTCGGAGAGCTCCGAGTACGAGGAGGAAACGGAAAGCGACGAGGAGAACGAACCCCGG 185 consensus_7635#0 ATGCACAGTACGCCAGCAGTGACGAAGAGTCGGAAGACGACGATTTCCTGGAGCACCGTC 300 consensus_7635#2 -------CCCNNTTTTCAGTGACGAAGAGTCGGNAGACGANGATTCCT--GAGCAC-GTC 50 consensus_7635#1 CTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCATTGAA--AAGGAGCGCG 243 * *** ** ***** *** ** * * consensus_7635#0 GAGCGAACGAAGAGCAGCAGCAACGGGAAGAATCAGACGATAACGAACTGCCAGACGATG 360 consensus_7635#2 GAGCGAACGAAGAGCAGCAGCA-CGGGAAGAATCAGA----------------------- 86 consensus_7635#1 AAGCCAACCGCCAGAAGCAGCTCGAGTATGAGTCGAAAAAGATGGCCAAAGAACGACGGA 303 *** *** ** ****** * * ** ** * consensus_7635#0 TCGATGATCCCCGTATCCGACGCCTGCAAGCGATTAGGGCCGAAACGCAAGATGACCTGG 420 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 AACAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGTTGGAAAAGACGAAGGTTG 363 consensus_7635#0 AACGGGAGCGCAAAGAACGACACCGGACGATACACGAGCCGGAGCTGGTACAATCGGACG 480 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 AAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACGACGAGGTGGAGTATG 423 consensus_7635#0 AAGAGAATGACCGTAGCGATGCCAGCGAGGACAATCGCAGACAGCGGTACAGCGACGATG 540 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 AGGCGTGGAAGCTGCGCGAACTGAAACGCATCAAGCGGGACCGCGAAGAGAAGGAACAGA 483 consensus_7635#0 AGCGGGAACAAGCGAATGCGACCTCCCGCCGGCGACGCATCTCCCTTGGCTCCGAGTCCG 600 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TCGAGAAGGAAAAGCAGGAAATCGAGCGGCTGCGCAACATGACGGAAGAGGAACGCCGGC 543 consensus_7635#0 AATCGGAGGCCGAGCTGAGCGATTCTGAGATCGAGCGCAGGCGCAACCTGCTGAAAGCGA 660 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 AGGAGCTGCGCAAGCAACCCGAAACAGGTGACGAACAAGAACGTGAAGGGCAAGTACAAG 603 consensus_7635#0 AAATGCTGCAGCAGAAGCAACGCGAGGAGGAGGAATTGCTGCAGAAGCAGGAGGAGGAAG 720 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 TTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGGACCGACGTGTA 663 consensus_7635#0 GCATGTCGGATTCGGAAGAGTCGGAGAGCTCCGGGTACGAGGAGGAAACGGAAAGCGACG 780 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 CAAGCAGGACTTCTCGGGCCCGGACGCTTGAGGGACCATTTTCGACAAGACGATCCTNCC 723 consensus_7635#0 AGGAGAACGAACCCCGGCTAAAGCCGCTGTTCGTGCGCAAAAAGGACCGCACGACGATCA 840 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 GAAAGGTGATGCCAGGTGAGAAACTTTGGGCGGTGCGGTCAGGACCAAAGGTNCACNCGG 783 consensus_7635#0 TTGAAAAGGAGCGCGAACCAAACCGCCAAAAGCAGCTCGAGTATGAGTCGAAAAAGATGG 900 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 CCATTTCTGGGTTCGGANACACANGGGGACACACCGGGACCCAAAGTTTCCGGAACTCTT 843 consensus_7635#0 CCAAAGAACGACGGAAGCAGACGCTCCGGCTGGTGGAGGACAGCATTAAGAAGGAGCTGG 960 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 NGGCCGCAGTGCGGGTTAAGCGGACACAACAGGNGCCAAACTAGGCGNAGCNANTTCTTT 903 consensus_7635#0 AAAAGACGAAGGTTGAAAACGAACCGTCGCTGAACGACGTCAACACGGACGACGAGAACG 1020 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 CCCCACTCCCCGANAGCTGGGACCACGGNTGGGCATGAANGNCAGGGGTTTCCGGNAAAA 963 consensus_7635#0 ACGAGGTGGAGTATGAGGCGTGGAAGTGCGCGAACTGAAACGCATCAAGCGGGACCGCGA 1080 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 GCCNT------------------------------------------------------- 968 consensus_7635#0 AGAGAAGGAACAGATCGAGAAGGAAAAGCAGGAAATCGAGCGGTGCGCAACATGACGGAA 1140 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 GAGGAACGCCGGCAGGAGTGCGCAACAACCCGAAACAGGTGACGAACAAGAACGTGAAGG 1200 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 GCAAGTACAAGTTCCTGCAGAAGTACTACCATCGCGGCGCCTTCTACCTCGACGAGGAGG 1260 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 ACGACGTGTACAAGCAGGACTTCTCGGCCCCGACGCTGGAGGACCATTTCGACAAGACGA 1320 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 TCCTGCCGAAGGTGATGCAGGTGAAGAACTTTGGCCGTGCGGTCGCACCAAGTACACGCA 1380 consensus_7635#2 ------------------------------------------------------------ consensus_7635#1 ------------------------------------------------------------ consensus_7635#0 TCTGGTCGACCAGGACACCGCCAAGTTCGACTCGC 1415 consensus_7635#2 ----------------------------------- consensus_7635#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||