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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1933 fasta sequence
[TTTTTTCTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTCAAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAATTCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACAATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACCACCGCCATCGGGAGATCGCTCGAACCGTCCGGCGCCGGCACACCGATCACGCACACCTGCTTCACCCCGTCCATGCGCTGTATGATGCACTCCAGATCGGACGGCGACACCTGGTAGTTGTTGTACTTGATGATGTCCTTGATGCGATCGACCACGTACAGGCTGCCGTCCGCATCGATGTACCCGATGTCGCCGCTCCGGAAGAACCCGTCCTCGGTCAGTGCGTTCGCGGTCGCTTCCGGATTGTGCAGGTAACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGGCGAACGCTGCTCAGATCGGCCCGGTCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGCTACAATATGGAAACGGAGCGGTCGATTAGAATCTTATTAGATTATTAACGGAGCAAAGACTTACGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGATGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCACTCCTTCCCCGTCGATCGGTTCCAGCAGCTCGTCCACCGACCGATGAACCCCCTCCGCTGCCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCTGGGCCGCACCACGCCCGCATTGGCCGGATCGCAAAACACCAGCCCCGATTGCGTTTGCTTCATCATGTGCACAAAGTCGGCCTTCTCGAACACGGGCGCAAGGGGATTGACGGCCAGCCCCAGTACCCAGCAGCCGATCAGCACCGGCACAACCTGCTCGCCGTTGCCGCAGGCAAGGCTGACAAAGTCACCGCGCCGGTAACCAAGGCGACGCAGGTGCAGTGCGACCCGAACGATGCGCCGCCTCATCTCGCCGCACGTCGTTTGCCGGCCCGTGTCGGCATTGATCTGGATGACGCGGTCGGGCGAGCGGGCGAGCACATCGAGCACGATGCGGCCAATACCGGCGGCCGGATTTAGCACGGACGGTAAGCTTTCACCGTACCACGTCTGTTCGGTTGGGTTGTAATGACTTTGCATCGTTTTGTTTTTTGTTTTTGCTAGGGAGAGCGCACACTGGTTTGGATGGACACACACTTTAACGACCGGACACAGCGACCGG]
[+] EMBL AGA283361 [TTTTTTCTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTCAAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAATTCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACAATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACCACCGCCATCGGGAGATCGCTCG ]
[-] EMBL BM651721 [ CTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTCAAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAATTCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGcgg ]
[-] EMBL BX610102 [ CACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACAATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACCACCGCCATCGGCAGATCGCTCGAACCGTCCGGCGCCGGCACACCGATCACGCACACCTGCTTCACCCCGTCCATGCGCTGTATGATGCACTCCAGATCGGACGGCGACACCTGGTAGTTGTTGTACTTGATGATGTCCTTGATGCGATCGACCACGTACAGGCTGCCGTCCGCATCGATGTACCCGATGTCGCCGCTCCGGAAGAACCCGTCCTCGGTCAGTGCGTTCGCGGTCGCTTCCGGATTGTGCAGGTAACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGA ]
[+] EMBL BM589761 [ ccgCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGGCGAACGCTGCTCAGATCGGCCCGGTCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGCTACAATATGGAAACGGAGCGGTCGATTAGAATCTTATTAGATTATTAACGGAGCAAAGACTTACGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGATGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCACTCCTTCCCCGTCGATCGGTTCCAGCAGCT ]
[-] EMBL AGA284653 [ TGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGATGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCACTCC TCCCCGTCGATCGGTTCCAGCAGCTCGTCCACCGACCGATGAACCCCCTCCGCTGCCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCTGGGCCGCACCACGCCCGCATTG ]
[-] EMBL BM601835 [ CCGACCGATGAACCCCCTCCGCTGCCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCT TCCCGCACCACGCCCGCATTGGCCGGATCGCAAAACACCAGCCCCGATTGCGTTTGCTTCATCATGTGCACAAAGTCGGCCTTCTCGAACACGGGCGCAAGGGGATTGACGGCCAGCCCCAGTACCCAGCAGCCGATCAGCACCGGCACAACCTGCTCGCCGTTGCCGCAGGCAAGGCTGACAAAGTCACCGCGCCGGTAACCAAGGCGACGCAGGTGCAGTGCGACCCGAACGATGCGCCGCCTCATCTCGCCGCACGTCGTTTGCCGGCCCGTGTCGGCATTGATCTGGATGACGCGGTCGGGCGAGCGGGCGAGCACATCGAGCACGATGCGGCCAATACCGGCGGCCGGATTTAGCACGGACGGTAAGCTTTCACCGTACCACGTCTGTTCGGTTGGGTTGTAATGACTTTGCATCGTTTTGTTTTTTGTTTTTGCTAGGGAGAGCGCACACTGGTTTGGATGGACACACACTTTAACGACCGGACACAGCGACCGG]
consensusID : consensus_7646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[ACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGCCGAACGCTGCTCAGATCGGCCCGGGCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGCCCGGTCGT]
[-] EMBL BX614667 [ACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGCCGAACGCTGCTCAGATCGGCCCGGGCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGCCCGGTCGT]
consensusID : consensus_7646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence
[ATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAGCTGTCCACGAACCGCACCCCGCCCCGCAGTCGCTTAAAGTCCGCCACTTGCCCCGCGACATGCCGCACAATGTCCTCCTCCCGCAGCGGCGTCACGCCGCCCACTTTCCGCTCGACCACCGCCATCGGCAGATCGCTAGAACCGTCCGGCGCCGGCACACCGATCACG]
[-] EMBL BM618229 [ATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAGCTGTCCACGAACCGCACCCCGCCCCGCAGTCGCTTAAAGTCCGCCACTTGCCCCGCGACATGCCGCACAATGTCCTCCTCCCGCAGCGGCGTCACGCCGCCCACTTTCCGCTCGACCACCGCCATCGGCAGATCGCTAGAACCGTCCGGCGCCGGCACACCGATCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7646#0 TTTTTTCTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTC 60
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 AAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAAT 120
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATC 180
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 ATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACG 240
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 AACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACA 300
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 ATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACC 360
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 ACCGCCATCGGGAGATCGCTCGAACCGTCCGGCGCCGGCACACCGATCACGCACACCTGC 420
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TTCACCCCGTCCATGCGCTGTATGATGCACTCCAGATCGGACGGCGACACCTGGTAGTTG 480
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TTGTACTTGATGATGTCCTTGATGCGATCGACCACGTACAGGCTGCCGTCCGCATCGATG 540
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TACCCGATGTCGCCGCTCCGGAAGAACCCGTCCTCGGTCAGTGCGTTCGCGGTCGCTTCC 600
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 GGATTGTGCAGGTAACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACT 660
consensus_7646#1 --------------ACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACT 46
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 CCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGC 720
consensus_7646#1 CCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGC 106
consensus_7646#2 -----ATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAGC 55
* * * ** ** * * * * * * *** ** ***
consensus_7646#0 GGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAG 780
consensus_7646#1 GGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAG 166
consensus_7646#2 TGTCCA--CGAACCGCACCCCGCCCCGCAGTCGCTTAAAGTCCGCCACTTGCCCCGCGAC 113
* ** *** ** * * ** * *** * ** ** * **
consensus_7646#0 CTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATT 840
consensus_7646#1 CTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATT 226
consensus_7646#2 ATGCCGCACA--------ATGTCCTCCTCCCGCAGCGGCGTC-----ACGCCGCCCACTT 160
***** * * *** * *** * *** ** ** *** * **
consensus_7646#0 TCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGGCGAACGCTGCT--CAGATCGGCCC 898
consensus_7646#1 TCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGCCGAACGCTGCT--CAGATCGGCCC 284
consensus_7646#2 TCCGCTCGACCACCGCCATCGGCAGATCGCTAGAACCGTCCGGCGCCGGCACACCGATCA 220
**** * * * * * * * ** * ** ** ** ** * ** *
consensus_7646#0 GGTCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCT 958
consensus_7646#1 GGGCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCT 344
consensus_7646#2 CG---------------------------------------------------------- 222
*
consensus_7646#0 CGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGA 1018
consensus_7646#1 CGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGA 404
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 GAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGA 1078
consensus_7646#1 GAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGA 464
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 ACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGCTACAATATGGAAACGGAG 1138
consensus_7646#1 ACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCG------------------- 505
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 CGGTCGATTAGAATCTTATTAGATTATTAACGGAGCAAAGACTTACGTGGAAAAGACCAT 1198
consensus_7646#1 ----------------------------------------------GTGGAAAAGACCAT 519
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGA 1258
consensus_7646#1 TCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGCCCGGTCGT------ 573
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCA 1318
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 CTCCTTCCCCGTCGATCGGTTCCAGCAGCTCGTCCACCGACCGATGAACCCCCTCCGCTG 1378
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 CCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCTGGGCCGC 1438
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 ACCACGCCCGCATTGGCCGGATCGCAAAACACCAGCCCCGATTGCGTTTGCTTCATCATG 1498
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TGCACAAAGTCGGCCTTCTCGAACACGGGCGCAAGGGGATTGACGGCCAGCCCCAGTACC 1558
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 CAGCAGCCGATCAGCACCGGCACAACCTGCTCGCCGTTGCCGCAGGCAAGGCTGACAAAG 1618
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TCACCGCGCCGGTAACCAAGGCGACGCAGGTGCAGTGCGACCCGAACGATGCGCCGCCTC 1678
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 ATCTCGCCGCACGTCGTTTGCCGGCCCGTGTCGGCATTGATCTGGATGACGCGGTCGGGC 1738
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 GAGCGGGCGAGCACATCGAGCACGATGCGGCCAATACCGGCGGCCGGATTTAGCACGGAC 1798
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 GGTAAGCTTTCACCGTACCACGTCTGTTCGGTTGGGTTGTAATGACTTTGCATCGTTTTG 1858
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 TTTTTTGTTTTTGCTAGGGAGAGCGCACACTGGTTTGGATGGACACACACTTTAACGACC 1918
consensus_7646#1 ------------------------------------------------------------
consensus_7646#2 ------------------------------------------------------------
consensus_7646#0 GGACACAGCGACCGG 1933
consensus_7646#1 ---------------
consensus_7646#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||