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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 695 fasta sequence
[ATACGAAATTCCGTAGCCGTGCCCTGCGACAACGCGTTCCAGAAAAATCCCACAGCTCAAGGTGACGAAACCGTAACACGCCTGCCACATA---TCGT-GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAGGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCG-ACCGCAAACAGTCCGCACTGGAAGATTGCACCAAAGCGCTAGAGTACAATCCCCACTAC]
[+] EMBL CNS08XG0 [ATACGAAATTCCGTAGCCGTGCCCTGCGACAACGCGTTCCAGAAAAATCCCACAGCTCAAGGTGACGAAACCGTAACACGCCTGCCACATA TCGT GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAAAGGCCAGGGCCATCCTGTACGCGAATCGTGCCG ]
[+] EMBL BM622872 [ CCG GCCCTGCGA CGTTCCAGAAAAGTCCCACATCTCGAGGTGACGAAACCGTAACACGCCTGCAACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCCGTCCGGAGGCCACCCGACTCGGACGCGGAAGAGTTTGTCGACTGTGTGAATGGACCGGAGGTGCCGCAATCCCAAAACAAACCGACGACAGCAGAGCAAGAGAATGAGTCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGATTCACCACCCGAGGACGATCTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAAGCGAACAAAACCAAAGCGGATGAGCTGAAGCAGCAGGGCAATGAGCTGTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCGCTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAGGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCG ACCGCAAACAGTC ]
[+] EMBL BX620629 [ TGCCCTGCGACAACGCGTTCCAGAAAACTCCCACAGCTCAAGGTGACGAAACCGTAGCACGCCTGCCACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGAAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTGTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAGGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCG ACCGCAAACAGTCCGCACTGGAAGATTGCACCAAAGCGCTAGAGTACAATCCCCACTAC]
[+] EMBL BX604817 [ ACGAAACCGTAACACGCCTGCCACATA TCGT GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGA TTAATAGA ]
[+] EMBL CNS08O6Y [ GAAACCGTAACACGCCTGCCACATA TCGT GCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGACTGTCGGTCCGGAGGCCACCCGACTCGGACGCGGTAGAGTTTGTCGACTGCGTGAATGGGCCGGAGGTGTCGCAATCCCAAAAGAAACCGACGACAGCAGGGGAAGAGAATGAATCATGTCGACAGGTAGCGGGAACGTCGGAAGAGGAATCACCACCCGAGGACGATTTAATAGACGAAGACTCCCAGCGGGACTACGAGTGTGGCCTGTCGGAGGAGGAACTGGAGGCGAACAAAACCAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCGCTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAAGGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAA CTCGTACCGCAAACAGT ]
consensusID : consensus_7676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[AGGCAGAATTGCCCGAGGTNATAGAAATTCCGTAGTCGTGCCCTGCGACAACGCGTTCCAGAAAACTCCCACAGCTCAATGGTGACGAAACCTGTAGCACTGCCTGCCACATATACTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGGAAAAGGTGACTGGGACTGTCGGTCCGGAGGCCACCGACTACGGACGCGGAAGCAGTATGTACGACTGCGTGAATGGGCCGGAGGTTGTCGGCGAATACCCAAATGAAACCGANGACAGCAGNGTGAAGCAGAGACTGCACTCATGTCGGACAGGTTACGCNGGGAACGTCGGAAGAGGCNATCAGCCAACCCGAGGACCGAGTTNTACTAGACGAAAGACTCCCAGCGGTGACTTACGAGCTTGTTGGGCACTGGTCCGGCAGGAGGGAACTTGGCAGCGCCTGGAACCNAAANAACCAAAAGCNGGACGGAAGGCTTGCCACGCA]
[+] EMBL AL696120 [AGGCAGAATTGCCCGAGGTNATAGAAATTCCGTAGTCGTGCCCTGCGACAACGCGTTCCAGAAAACTCCCACAGCTCAATGGTGACGAAACCTGTAGCACTGCCTGCCACATATACTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGGAAAAGGTGACTGGGACTGTCGGTCCGGAGGCCACCGACTACGGACGCGGAAGCAGTATGTACGACTGCGTGAATGGGCCGGAGGTTGTCGGCGAATACCCAAATGAAACCGANGACAGCAGNGTGAAGCAGAGACTGCACTCATGTCGGACAGGTTACGCNGGGAACGTCGGAAGAGGCNATCAGCCAACCCGAGGACCGAGTTNTACTAGACGAAAGACTCCCAGCGGTGACTTACGAGCTTGTTGGGCACTGGTCCGGCAGGAGGGAACTTGGCAGCGCCTGGAACCNAAANAACCAAAAGCNGGACGGAAGGCTTGCCACGCA]
consensusID : consensus_7676#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[CCGAGGTTAAAAAACTGTAAATACGAAATTCGTAGCCGTGCCCTGCGACGTTCCAGAAAAGTCCACATCTCGAGGTGACGAAACCGTAACACGCCTGCAACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGAGNTGTGCTCCCGCTTCCCGCGCACGCGCCCCACCCCCCGCACCCTCGCGCCACCGCCCGCGCCANCGCACGCCTCCCGCTCCCACCCTGCTGCTGCANCTGGCACCCGCGGCCACGCCGGCTTGGCCCCCGGGCCGAACACACNTCGCCCCCAAGTAACAATCACGCCCAANATGANGCCCCCCGGGAAAGCCGGCAAACGCNAGATGGTCCAAGAGGGCAAAGCGTCCGACAACGGGCAACGGGCAAAGANCAGCTTGGAANGGNTTTCGCAGCTGGGGGCTTCNCGGAAAACCAAGGGGGGGT]
[+] EMBL AL933331 [CCGAGGTTAAAAAACTGTAAATACGAAATTCGTAGCCGTGCCCTGCGACGTTCCAGAAAAGTCCACATCTCGAGGTGACGAAACCGTAACACGCCTGCAACATATCCTCGTCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGACGAAGTTATCGAAAAGGTGATGGGAGNTGTGCTCCCGCTTCCCGCGCACGCGCCCCACCCCCCGCACCCTCGCGCCACCGCCCGCGCCANCGCACGCCTCCCGCTCCCACCCTGCTGCTGCANCTGGCACCCGCGGCCACGCCGGCTTGGCCCCCGGGCCGAACACACNTCGCCCCCAAGTAACAATCACGCCCAANATGANGCCCCCCGGGAAAGCCGGCAAACGCNAGATGGTCCAAGAGGGCAAAGCGTCCGACAACGGGCAACGGGCAAAGANCAGCTTGGAANGGNTTTCGCAGCTGGGGGCTTCNCGGAAAACCAAGGGGGGGT]
consensusID : consensus_7676#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[CAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGNACGAAGTTATCGAAAAGGTGATGGGACTGTCCGTCCGGAAGGGCCCAACCCCCTGTAACATTCCTGGNGGAACACGCCCGTGGCAAAGGNGAAGCGNTCTCTTCCCTCATGGGGAGTTCCTCCGAAAACCTTTGGGNTTGAGGTTTTTTGTCACAACTTTNGTGGGTAACCCCCTGGGTGGAAAATGGGCTTTTTGAGTCCCCCTGGNGCCACAAAATTACCCTCCCCCAATAAATAGAAGCTTATAATAAGATGCCCGGTAAACCGGCTAAAAACATGGGCCTAAGGCGNAAGGGCCCTAAGGCAACGGAAAATTTTGGGACCGTTT]
[+] EMBL AL695797 [CAAAGTGCTTCCAGAGGTTTCCAAAAGCGACGACGAACAAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGNACGAAGTTATCGAAAAGGTGATGGGACTGTCCGTCCGGAAGGGCCCAACCCCCTGTAACATTCCTGGNGGAACACGCCCGTGGCAAAGGNGAAGCGNTCTCTTCCCTCATGGGGAGTTCCTCCGAAAACCTTTGGGNTTGAGGTTTTTTGTCACAACTTTNGTGGGTAACCCCCTGGGTGGAAAATGGGCTTTTTGAGTCCCCCTGGNGCCACAAAATTACCCTCCCCCAATAAATAGAAGCTTATAATAAGATGCCCGGTAAACCGGCTAAAAACATGGGCCTAAGGCGNAAGGGCCCTAAGGCAACGGAAAATTTTGGGACCGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7676#0 --------------------ATACGAAATTCCGTAGCCGTGCCCTGCGACAACGCGTTCC 40
consensus_7676#1 AGGCAGAATTGCCCGAGGTNATA-GAAATTCCGTAGTCGTGCCCTGCGACAACGCGTTCC 59
consensus_7676#2 CCGAGGTTAAAAAACTGTAAATACGAAATTC-GTAGCCGTGCCCTGCGAC-----GTTCC 54
consensus_7676#3 ------------------------------------------------------------
consensus_7676#0 AGAAAAATCCCACAGCTCAA-GGTGACGAAACC-GTAACAC-GCCTGCCACATAT---CG 94
consensus_7676#1 AGAAAACTCCCACAGCTCAATGGTGACGAAACCTGTAGCACTGCCTGCCACATATACTCG 119
consensus_7676#2 AGAAAAGTCC-ACATCTCGA-GGTGACGAAACC-GTAACAC-GCCTGCAACATATCCTCG 110
consensus_7676#3 ------------------------------------------------------------
consensus_7676#0 TGCC-ATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 153
consensus_7676#1 TCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 179
consensus_7676#2 TCCCCATCTGTTTGGCTGGAATGGGCGACAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 170
consensus_7676#3 ----------------------------CAAAGTGCTTCCAGAGGTTTCCAAAAGCGACG 32
********************************
consensus_7676#0 ACGAACA-ATTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGA-CGA 211
consensus_7676#1 ACGAACA-GTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGA-CGA 237
consensus_7676#2 ACGAACA-GTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGA-CGA 228
consensus_7676#3 ACGAACAAGTTCGAGGATGCACAGAGCAAGGAAGATTTTAACGAGCGAACCGTCGNACGA 92
******* ********************************************** ***
consensus_7676#0 AGTTATCG-AAAAGGTGA-TGGGACTGTCGGTCCGGAGGCCACCC--GACTCGGACGCGG 267
consensus_7676#1 AGTTATCGGAAAAGGTGACTGGGACTGTCGGTCCGGAGGCCACCG--ACTACGGACGCGG 295
consensus_7676#2 AGTTATCG-AAAAGGTGATGGGAGNTGTGCTCCCGCTTCCCGCGCACGCGCCCCACCCCC 287
consensus_7676#3 AGTTATCG-AAAAGGTGA-TGGGACTGTCCGTCCGGAAGGGCCCA--ACCCCCTGTAACA 148
******** ********* ** *** *** * *
consensus_7676#0 TAG-AGTTTGT-CGACTGCGTGAATGGGCCGGAGGT----GTCGCAATCCCAAAAGAAAC 321
consensus_7676#1 AAGCAGTATGTACGACTGCGTGAATGGGCCGGAGGTTGTCGGCGAATACCCAAATGAAAC 355
consensus_7676#2 CGCACCCTCGCGCCACCGCCCGCGCCANC-GCACGCCTCCCGCTCCCACCCTGCTGCTGC 346
consensus_7676#3 TTCCTGGNGGAACACGCCCGTG-GCAAAGGNGAAGCGNTCTCTTCCCTCATGGGGAGTTC 207
* * * * * * * *
consensus_7676#0 CGACGACAGCAG-GG----GAAGAGAATGAA-TCATGTCG-ACAGGTAGCG---GGAACG 371
consensus_7676#1 CGANGACAGCAG-NGTGAAGCAGAGACTGCACTCATGTCGGACAGGTTACGCNGGGAACG 414
consensus_7676#2 ANCTGGCACCCGCGGCCACGCCGGCTTGGCCCCCGGGCCGAACACACNTCGC------CC 400
consensus_7676#3 CTCCGAAAACCT--------TTGGGNTTGAGGTTTTTTGTCACAACTTTNGTGGGTAACC 259
* * * * * *** * *
consensus_7676#0 TCGGAAGAGG-AATCACC--ACCCGAGGAC---GATTTAATAGACGAA-GACTCCCAGCG 424
consensus_7676#1 TCGGAAGAGGCNATCAGCCAACCCGAGGACCGAGTTNTACTAGACGAAAGACTCCCAGCG 474
consensus_7676#2 CCAAGTAACAATCACGCCCAANATGANGCCC--CCCGGGAAAGCCGGCAAACGCNAGATG 458
consensus_7676#3 CCCTGGGTGGAAAATGGGCTTTTTGAGTCCC--CCTGGNGCCACAAAATTACCCTCCCCC 317
* ** * ** *
consensus_7676#0 G-GACT-ACGAGTGTG----------GCCTGTCGGAGGAGGAACTGGAGGCGAACAAAAC 472
consensus_7676#1 GTGACTTACGAGCTTGTTGGGCACTGGTCCGGCAGGAGGGAACTTGGCAGCGCCTGGAAC 534
consensus_7676#2 G---TCCAAGAGGGCAAAGC------GTCCGACA-ACGGGCAACGGGCAAAGANCAGCTT 508
consensus_7676#3 AATAAATAGAAGCTTATAATAAGAT-GCCCGGTAAACCGGCTAAAAACATGGGCCTAAGG 376
* ** * * * * *
consensus_7676#0 CAAAGCGGACGAGCTGAAGCAGCAGGGCAATGAGCTTTTCAAGCAGGGCGAGCACAGCCG 532
consensus_7676#1 CNAAANAACCAAA-------AGCNGGACGGAAGGCTTGCCACGCA--------------- 572
consensus_7676#2 GGAANGGNTTTCGC------AGCTGGGGGCTTCNCGGAAAACCAAGGGGGGGT------- 555
consensus_7676#3 CGNAAGGGCCCTAA------GGCAACGGAAAATTTTGGGACCGTTT-------------- 416
* **
consensus_7676#0 CTCGCTGGACCTGTACACACAAGCACTCCGGCTGTGCCCGCTAGATCGCAAAGAGGCCAG 592
consensus_7676#1 ------------------------------------------------------------
consensus_7676#2 ------------------------------------------------------------
consensus_7676#3 ------------------------------------------------------------
consensus_7676#0 GGCCATCCTGTACGCGAATCGTGCCGCTGCGAAAGCGAAGCTCGACCGCAAACAGTCCGC 652
consensus_7676#1 ------------------------------------------------------------
consensus_7676#2 ------------------------------------------------------------
consensus_7676#3 ------------------------------------------------------------
consensus_7676#0 ACTGGAAGATTGCACCAAAGCGCTAGAGTACAATCCCCACTAC 695
consensus_7676#1 -------------------------------------------
consensus_7676#2 -------------------------------------------
consensus_7676#3 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||