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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 808 fasta sequence
[CAGATCGCCACGAGGCCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACG-AAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG-CCCTGGTCGCACAGGCAT-CGG-CCGCGGC-AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA-CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC-TCACGCTCGAGACGTGCGAGAACGGACTGCTGT-TC-GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGGCCCGGTGACTG]
[+] EMBL BX466522 [CAGATCGCCACGAGGTGTAGCACA CGTGAGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACGAAAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGGACCCTGGTCGCACAGGCATACGGNACGCGGCTAGCCCCCAGNTGTCCGGAACCGTACGGGGAGCAGGCGTACCTGCACCCAGAGNCACTGNGACCAGTTCTTCCTCTGCACCAACGGTACGCGTCACGCTCGAGACGTGCGAGAACGGACTGGTGTATCAGACGGCAAGGGTGCGGTCCACAACCACTGGAACTACAACTGGGCGGTCGACn ]
[+] EMBL BM646888 [ CCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACG AAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATC ]
[+] EMBL BM597636 [ CCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACG AAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTG ]
[+] EMBL BM653533 [ ATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCC ]
[+] EMBL BM592075 [ ccgCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGGCCCGGTGACTG]
consensusID : consensus_7690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGCCCGGTGACTGCCACCGGCTGATCACCTGCGTCGACGGCCATCCGCGCCTGATCACGTGCGGCG]
[+] EMBL BM647705 [CCGCCCACGCGTCCGCCCACGCGTCCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGCCCGGTGACTGCCACCGGCTGATCACCTGCGTCGACGGCCATCCGCGCCTGATCACGTGCGGCG]
consensusID : consensus_7690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CCGCCCACGCGTCCGCAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGT]
[+] EMBL BM635488 [CCGCCCACGCGTCCGCAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGT]
consensusID : consensus_7690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[GAATTCCCGAGGTTAGAGCCAGCAGCATGAAGCAGTTGGCGCACTATTCGGACTAATCGGCTGGCCTGGTCGCACAGGCATTGGCCGCGGCAGCCCCAGCTGTCGGAACCTGTACGGCGAGCAGGCGTACTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGGTGCGGGTCCACAACCACTGCAATTACAAACTGGGCGGGTCGAACTGCGGGTAGCCCGGCAAGTTTCGCCACGGGACCAAGACCGC]
[+] EMBL AL695655 [GAATTCCCGAGGTTAGAGCCAGCAGCATGAAGCAGTTGGCGCACTATTCGGACTAATCGGCTGGCCTGGTCGCACAGGCATTGGCCGCGGCAGCCCCAGCTGTCGGAACCTGTACGGCGAGCAGGCGTACTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGGTGCGGGTCCACAACCACTGCAATTACAAACTGGGCGGGTCGAACTGCGGGTAGCCCGGCAAGTTTCGCCACGGGACCAAGACCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7690#0 CAGATCGCCACGAGGCCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCG 60
consensus_7690#2 ------------------------------------------------------------
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 ------------------------------------------------------------
consensus_7690#0 TACGAAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCT 120
consensus_7690#2 ------------------------------------------------------------
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 ------------------------------------------------------------
consensus_7690#0 GCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTC 180
consensus_7690#2 --------------------------------------------------------CCGC 4
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 ------------------------------------------------------------
consensus_7690#0 TCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCC 240
consensus_7690#2 CCACGCGTCCG---CAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCC 61
consensus_7690#3 ------------------------------------GAATTCCCGAGGTTAGAGC----C 20
consensus_7690#1 ----------------------------------------------------------CC 2
*
consensus_7690#0 AGCCA-GCATGAAGCAGTTTGGC-GCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCA 298
consensus_7690#2 AGCCA-GCATGAAGCAGTTTGGC-GCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCA 119
consensus_7690#3 AGC-A-GCATGAAGCAGTT-GGC-GCACTATTCGGACTAATCGGCTGG--CCTGGTCGCA 74
consensus_7690#1 GCCCACGCGTCCGCCCACGCGTCCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCA 62
* * ** * * * * ********************* * **********
consensus_7690#0 CAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTG 358
consensus_7690#2 CAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTG 179
consensus_7690#3 CAGGCATTGGCCGCGGCAGCCCC-AGCTGTCGGAACCTGTACGGCGAGCAGGCGTAC-TG 132
consensus_7690#1 CAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTG 122
******* *************** ******* * * * ******************* **
consensus_7690#0 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 418
consensus_7690#2 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 239
consensus_7690#3 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 192
consensus_7690#1 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 182
************************************************************
consensus_7690#0 TGCGAGAACGGACTGCTGTTCGACGGCAAGGG-TGCGG-TCCACAACCACTGCAACTACA 476
consensus_7690#2 TGCGAGAACGGACTGCTGTTCGACGGCAAGGG-TGCGG-TCCACAACCACTGCAACTACA 297
consensus_7690#3 TGCGAGAACGGACTGCTGTTCGACGGCAAGGGGTGCGGGTCCACAACCACTGCAATTACA 252
consensus_7690#1 TGCGAGAACGGACTGCTGTTCGACGGCAAGGG-TGCGG-TCCACAACCACTGCAACTACA 240
******************************** ***** **************** ****
consensus_7690#0 A-CTGGGCGG-TCGA-CTGCGG-TAGCC--GCAAGTT-CGCCACGGACCAGACGCCCCTG 529
consensus_7690#2 A-CTGGGCGG-TCGA-CTGCGG-TAGCC--GCAAGTT-CGCCACGGACCAGACGCCCCTG 350
consensus_7690#3 AACTGGGCGGGTCGAACTGCGGGTAGCCCGGCAAGTTTCGCCACGGGACCAAGACCGC-- 310
consensus_7690#1 A-CTGGGCGG-TCGA-CTGCGG-TAGCC--GCAAGTT-CGCCACGGACCAGACGCCCCTG 293
* ******** **** ****** ***** ******* ******** * * ** *
consensus_7690#0 TCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACC 589
consensus_7690#2 TCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACC 410
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 TCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACC 353
consensus_7690#0 AGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTG 649
consensus_7690#2 AGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTG 470
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 AGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTG 413
consensus_7690#0 TACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCG 709
consensus_7690#2 TACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCG 530
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 TACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCG 473
consensus_7690#0 GAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGC 769
consensus_7690#2 GAGGCGGTGGTCGGCTTCAAGTGCCCGCAGT----------------------------- 561
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 GAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGC 533
consensus_7690#0 TTCTGGCCGTACCCGCGCTACCCAGTGGCCCGGTGACTG--------------------- 808
consensus_7690#2 ------------------------------------------------------------
consensus_7690#3 ------------------------------------------------------------
consensus_7690#1 TTCTGGCCGTACCCGCGCTACCCAGTGCCCGGTGACTGCCACCGGCTGATCACCTGCGTC 593
consensus_7690#0 -------------------------------
consensus_7690#2 -------------------------------
consensus_7690#3 -------------------------------
consensus_7690#1 GACGGCCATCCGCGCCTGATCACGTGCGGCG 624
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||