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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1803 fasta sequence
[ACTCATGTAATGTAATGTGTTTTATGTTTTTGTGTAACGCATTCTGAAACATATTTTCGCTTTCTTGTGAACAGTGATTATTTACCATTTCTCGTTTAATTGCCTTTGATTTTAGCACTCCAGTTTTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGAAATTGTTTGTTAATTTTCTACAACAAACTGGTAAACAAAATATGCAATGTCATCCGGAAAAAGACACCAGGAAAAAGAAAACCCAAACGAAAATCATATTTGTATCGTGTTACTAAGTGTCTCCCTAAGAGTCTCATTTTTTCATTACATTTTCTTTCTCCCCTTTCTTTTGGTCGCTTGTAAAGCGAGAGAGTAAGTATAACTATGTAGGGAACGTTGAAGTGTTGCTGCAAAAAAGAGACACAAAACAAAGAATAAGTAAATCAATCAGCCTAAGTCTTGTTATGAGTGTTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAACGAGCGCAGAAACAGAGACAGTTAAAACACAAAGCGAAGAAATCAAATAAGACGTGAACGTCAGCAAACATGTTTGAGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAATTGAAGACAAAGAGAAAGATTTAAATCATAAATCCATACACTCACGCTAACATACATTAAAGCTCATACACCAACAT--ACACACACACATCCCTACAAGCAACGCGTCACATAAAACTGCCCGATTGTTGTAAATGAAAAATAAATAATTATATAATAAAGATTAATAACGCGATACTACCACAAACAACACGGCGAATGGATATATTAATAAAAGAGAATACAAATAAAAGTAACAAAAAC----AC--ACAAACAATCCTTACGTTATTGCACTGTGTATGTGTGTGCGTTTGTCACTCGCTCTGGTGGGACAGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTAAAGGAAAAATAAAAT---AAAAATGGTACCAAATCAACCGAGCGCTCGTAAAAATAAATAAAAAAAAAGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAATTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAGTAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATAGACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGATTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAG--ATACACACAAATACACGCCAAACACAGGAACGTGTGGGAAAAAAAATCCAGAAACCAGCAATTTAAAGGGAAGTAAAAACTGTAACGAAGTAAACACGAGACAGAAAATGGAAAACGAAG]
[+] EMBL BX624849 [ACTCATGTAATGTAATGTGTTTTATGTTTTTGTGTAACGCATTCTGAAACATATTTTCGCTTTCTTGTGAACAGTGATTATTTACCATTTCTCGTTTAATTGCCTTTGATTTTAGCACTCCAGTTTTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGAAATTGTTTGTTAATTTTCTACAACAAACTGGTAAACAAAATATGCAATGTCATCCGGAAAAAGACACCAGGAAAAAGAAAACCCAAACGAAAATCATATTTGTATCGTGTTACTAAGTGTCTCCCTAAGAGTCTCATTTTTTCATTACATTTTCTTTCTCCCCTTTCTTTTGGTCGCTTGTAAAGCGAGAGAGTAAGTATAACTATGTAGGGAACGTTGAAGTGTTGCTGCAAAAAAGAGACACAAAACAAAGAATAAGTAAATCAATCAGCCTAAGTCTTGTTATGAGTGTTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAACGAGCGCAGAAACAGAGACAGTTAAAACACAAAGCGAAGAAATCAAATAAGACGTGAACGTCAGCAAACATGTTTGAGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTCNAACGTCAAAGAAAATAAGTCTAATTGAAGA GAAGA AAAGA TTAAATCAT AATCTATACACTCACGCT ACATACATTAAg ]
[+] EMBL BM624347 [ ccgTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAACGAGCGCAGAAACTGAGACAGTTAAGAAACAAAGCGAAGAAATCAAATAAGACGTGAACGTCAGCAAACATGTTTGAGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAATTGAAGACAAAGAGAAAGATTTAAATCATAAATCCATACACTCACGCTAACATACATTAAAGCTCATACACCAACAT ACACACACACATCCCTACAAGCAACGCGTCACATAAAACTGCCCGATTGTTGTAAATGAAAAATAAATAATTATATAATAAAGATTAATAACGCGATACTACCACAAACAACACGGCGAATGGATATATTAATAAAAGAGAATACAAATAAAAGTAACAAAAAC AC ACAAACAATCCTTACGTTATTGCACTGTGTATGTGTGTGCGTTTGTCACTCGCTCTGGTGGGACAGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTAAAGGAAAAATAAAAT AAAAATGGTACCAAATCAACCGAGCGCTCGTAAAAATAAATAAAAAAAAAGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAAC ]
[+] EMBL BM601069 [ ccgGAGATTGTGTAGTGTGAGTGTGAGTGTATCGCAAATATTATCGCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAATTGAAGAGAAAGAACAAGATTTAAATCATAAATCCATACACTCACGCCAACACACATTAAAGCTCATACACCGACATAAACACACACACATCCCTACAAGCAACGCGTCACATAAAACTGCCCGATTGTTGTAAATGAAAAATAAATAAATATATTATAAAGATTAATAACGCGATACTACCACAAACAACACGGCGAATGGATATATTCATAAAAGAGAATACAAATAAA ]
[+] EMBL BM653509 [ ccgAAGAGAATACAAATAAAAGTAACAAAAACAAAAACAAACAAACAACCCTTACATTATTGCACTGTGTATGTGTGTGCGTGTGTCACTCGCTCCGGTGGGACGGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTGAAGGAAAAATAAAATTTAAAAAACGGTACCAAATCAACCGAGCGCTCGTAAAAATAAAT TAAAAAAAGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAAT ]
[+] EMBL BM621947 [ ccGGTAATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAATTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAGTAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATAGACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGATTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAG ATACACACAAATACACGCCAAACA ]
[+] EMBL BM599344 [ ccgAGAAAACACTCTAGTACACTGCGAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAAGAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACGATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCAAACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAATTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAGTAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATAGACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGATTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAG ATACACACAAATACACGCCAAACACAGGAACGTGTGGGAAAAAAAATCCAGAAACCAGCAATTTAAAGGGAAGTAAAAACTGTAACGAAGTAAACACGAGACAGAAAATGGAAAACGAAG]
[+] EMBL BX610873 [ AGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATACTTTCTCTCTATCACAAAACCACATACAATACATCGACACGCACAGAGAGACACACACACAAATACACGCCAAACACAGGA ]
consensusID : consensus_7698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence
[GCAGAATCCCGNCGGTATTCTTTGTGTACGCATTCGGAAATATATTTTCCTTTTGTTGTGAACAGTGATTATTCACCATTTCTCGGTTAATATGCCTTTGATTTTAGCACTCCAGTTGTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGNNACATTGTTTGTGTAATATTTTTACAACGCAACTGGGTAAACAAAATATGCAATGTCATCCGTACACCAGGAAAAAGAAAACCAAACGAAGATGTNCTCATGTTGTATCGTGTTACTAAATGTCTACCCTAAGAGTCTCATNAATTTCATTACATTATNACTTATACTACCCCTTTCTATTAAGGTACGCTATGTAAAGCGAGCAGNAGTAANGTNATAAACTATGTAGGGAACGTTGAACGTAGTTTGCTTGCGAACAAANAGAGACACAAAACACAAGAACTAACGTANACTCAATCAGACCTAAGTCTTGTTAATGAGTGTTCATAGACACACTTGGTTTANTCCAAACGGANTCACACACGAACCGTTACANACGANGCGCAGAACACTGAGGACCAAGTTAAGAAACACCCACAAGCGGAAACAGAAAAATTCCACACACTTAAACACAACCCNGGTTGAAANACCGTTCCCTACGCNCAACCATTAGTTTNCTGGAACGNCACGCACTCNCGGGTGGTNAGGTGGTTGGAAAGCTTGGTTAGGAACGTTGGGNTCNTTCCCGGCACACAACTNACTTTCACTCCGCCCACACTANCAGAAGGGCAGGGACACTCAATATGAANTGTAAGCAAAACATTGGAANCCGGGGAACTTTAGTNCAACACCCGTCCCAACAGCGANAAACACTNA]
[+] EMBL AL695511 [GCAGAATCCCGNCGGTATTCTTTGTGTACGCATTCGGAAATATATTTTCCTTTTGTTGTGAACAGTGATTATTCACCATTTCTCGGTTAATATGCCTTTGATTTTAGCACTCCAGTTGTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGNNACATTGTTTGTGTAATATTTTTACAACGCAACTGGGTAAACAAAATATGCAATGTCATCCGTACACCAGGAAAAAGAAAACCAAACGAAGATGTNCTCATGTTGTATCGTGTTACTAAATGTCTACCCTAAGAGTCTCATNAATTTCATTACATTATNACTTATACTACCCCTTTCTATTAAGGTACGCTATGTAAAGCGAGCAGNAGTAANGTNATAAACTATGTAGGGAACGTTGAACGTAGTTTGCTTGCGAACAAANAGAGACACAAAACACAAGAACTAACGTANACTCAATCAGACCTAAGTCTTGTTAATGAGTGTTCATAGACACACTTGGTTTANTCCAAACGGANTCACACACGAACCGTTACANACGANGCGCAGAACACTGAGGACCAAGTTAAGAAACACCCACAAGCGGAAACAGAAAAATTCCACACACTTAAACACAACCCNGGTTGAAANACCGTTCCCTACGCNCAACCATTAGTTTNCTGGAACGNCACGCACTCNCGGGTGGTNAGGTGGTTGGAAAGCTTGGTTAGGAACGTTGGGNTCNTTCCCGGCACACAACTNACTTTCACTCCGCCCACACTANCAGAAGGGCAGGGACACTCAATATGAANTGTAAGCAAAACATTGGAANCCGGGGAACTTTAGTNCAACACCCGTCCCAACAGCGANAAACACTNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7698#0 ACTCATGTAATGTAATGTGTTTTATGTT-TTTGTGTAACGCATTCTGAAACATATTTTCG 59
consensus_7698#1 ---------GCAGAATCCCGNCGGTATTCTTTGTGTA-CGCATTCGGAAATATATTTTCC 50
*** * ** ******** ******* **** ********
consensus_7698#0 CTTTCTTGTGAACAGTGATTATTTACCATTTCTCGTTTAAT-TGCCTTTGATTTTAGCAC 118
consensus_7698#1 TTTTGTTGTGAACAGTGATTATTCACCATTTCTCGGTTAATATGCCTTTGATTTTAGCAC 110
*** ****************** *********** ***** ******************
consensus_7698#0 TCCAGTTTTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGAAA--TTGTTT 176
consensus_7698#1 TCCAGTTGTTAATTTACCAAATGTTTTAAAAATTTCTATAAAAAATTGGNNACATTGTTT 170
******* ***************************************** * ******
consensus_7698#0 GT-TAAT-TTTCTACAACA-AACTGG-TAAACAAAATATGCAATGTCATCCGGAAAAAGA 232
consensus_7698#1 GTGTAATATTTTTACAACGCAACTGGGTAAACAAAATATGCAATGTCATCCGTA------ 224
** **** *** ****** ****** ************************* *
consensus_7698#0 CACCAGGAAAAAGAAAACCCAAACGAAAATCATAT----TTGTATCGTGTTACTAAGTGT 288
consensus_7698#1 CACCAGGAAAAAGAAAACC-AAACGAAGATGTNCTCATGTTGTATCGTGTTACTAAATGT 283
******************* ******* ** * ***************** ***
consensus_7698#0 CT-CCCTAAGAGTCTCATTT-TTTCATTACATTTTCTTTCT-----CCCCTTTCTTTT-- 339
consensus_7698#1 CTACCCTAAGAGTCTCATNAATTTCATTACATTATNACTTATACTACCCCTTTCTATTAA 343
** *************** ************ * * ********* **
consensus_7698#0 GGT-CGCT-TGTAAAGCGAG--AGAGTAAG--TATAA-CTATGTAGGGAACGTTGAA--- 389
consensus_7698#1 GGTACGCTATGTAAAGCGAGCAGNAGTAANGTNATAAACTATGTAGGGAACGTTGAACGT 403
*** **** *********** ***** **** *******************
consensus_7698#0 -GTGTTGCTGCAAA---AAAGAGACACAAAACA-AAGAATAA--GTAAA-TCAATCAG-C 440
consensus_7698#1 AGTTTGCTTGCGAACAAANAGAGACACAAAACACAAGAACTAACGTANACTCAATCAGAC 463
** * *** ** * ************** ***** * *** * ******** *
consensus_7698#0 CTAAGTCTTGTTA-TGAGTGTTATGAAATTGATTATCAAACGATCAAACGAACGTTAAAA 499
consensus_7698#1 CTAAGTCTTGTTAATGAGTGTTCATAGACACACTTGGTTTANTCCAAACGGANTCACACA 523
************* ******** * * * * ****** * * *
consensus_7698#0 CGAGCGCAGAAACAGAGACAGTTAAAACACAAAGCGAAGAAATCAAATAAGACGTGAACG 559
consensus_7698#1 CGAAC-CGTTACANACGANGCGCAGAACACTGAG-GACCAAGTTAAGAAACACCCACAAG 581
*** * * * ** * ***** ** ** ** * ** ** ** * *
consensus_7698#0 TCAGCAAACATGTTTGAGAGATTGTGTA-GTGTGAGTGTGAGTGTATCGCAAATATTATC 618
consensus_7698#1 C--GGAAACA-----GAAAAATTCCACACACTTAAACACAACCCNGGTTGAAANACCGTT 634
* ***** ** * *** * * * * *** * *
consensus_7698#0 GCAATAGAGGAGGACTATGATAGAAATGACGGATTGAAACGTCAAAGAAAATAAGTCTAA 678
consensus_7698#1 CC--CTACGCNCAACCATTAGTTTNCTGGAACGNCACGCACTCNCGGGTGGTNAGGTGGT 692
* * ** ** * ** ** * * **
consensus_7698#0 TTGAAGACAAAG--AGAAAGATTTAAATCATAAATCCATACACTCACGCTAACATACATT 736
consensus_7698#1 TGGAAAGCTTGGTTAGGAACGTTGGGNTCNT---TCCCGGCACACA-ACTNACTTTCACT 748
* *** * * ** ** ** ** * *** *** ** ** ** * ** *
consensus_7698#0 AAAGCTCATACACCAACATACACACACACATCCC-TACAAGCAACGCGTCACATAAAACT 795
consensus_7698#1 CC-GCCCACACTANCAGAAGGGCAGGGACACTCAATATGAANTGTAAGCAAAACATTGGA 807
** ** ** * * ** *** * ** * * * * *
consensus_7698#0 GCCCGATTGTTGTAAATGAAAAATAAATAATTATA-TAATAAAGATTAATAACGCGATAC 854
consensus_7698#1 ANCCGGGGAACTTTAGTNCAACACCCGTCCCAACAGCGANAAACACTNA----------- 856
*** * * * ** * * * * * *** * * *
consensus_7698#0 TACCACAAACAACACGGCGAATGGATATATTAATAAAAGAGAATACAAATAAAAGTAACA 914
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 AAAACACACAAACAATCCTTACGTTATTGCACTGTGTATGTGTGTGCGTTTGTCACTCGC 974
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TCTGGTGGGACAGTAAACACGTAAACACGCGAGCGATTAAATAGTATGGTAAAGGAAAAA 1034
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TAAAATAAAAATGGTACCAAATCAACCGAGCGCTCGTAAAAATAAATAAAAAAAAAGGTA 1094
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 ATTAAGTAATTTAAAAGATGAATAAACAAACAAAACACAGAAAACACTCTAGTACACTGC 1154
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 GAAATCGCTCCTGCTTAAGCTCTTAATCAGGTATCCTGAATAGGAACCGGGTAGTTTGAA 1214
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 GAAAAAAAAACATGGAAGCGACTATGTCGTGAGCAATTATTATAAAAGTAAACACATACG 1274
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 ATGCAACCATTTTGATGATGATGATGATGAGTCTATATTTTGTTAGATATAAACTTTCCA 1334
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 AACATCTCTTTGTGCTGATTTGTTTGCAAACATCAATCGGAACATTACAAACAGATGCAA 1394
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TTAATAAGAACACACATTCACTTACACACTTTCATGAACAGCACACTACCTTAAGTCCAG 1454
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TAGTGGGACGCACGTGCCCAACGCAGGCCGAGGTTTTGTTACCTTGTTGGTTTTCACATA 1514
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 GACACAGCTGTAGACTTAAGGAAGAGAGAAAGAGATAGAGAGAGAGAAGGAGATAGAAGA 1574
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TTGCCAGTCCTATAGCCGCCGCCATTCGCTGCCATTCGCCACTGCTGCCGTAAACCATAC 1634
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TTTCTCTCTATCACAAAACCACATACAACACATCGACACGCACAGAGAGATACACACAAA 1694
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 TACACGCCAAACACAGGAACGTGTGGGAAAAAAAATCCAGAAACCAGCAATTTAAAGGGA 1754
consensus_7698#1 ------------------------------------------------------------
consensus_7698#0 AGTAAAAACTGTAACGAAGTAAACACGAGACAGAAAATGGAAAACGAAG 1803
consensus_7698#1 -------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||