cluster # 77

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Anopheles gambiae
cluster # 77 cluster # 77 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_77#0 length = 661 sequences # 1

consensus_77#1 length = 365 sequences # 1

consensusID : consensus_77#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [CCGGTGCGGATACACACAGACCGGTGCGAACGGTGCTACCGAACGGTTGCGTCCTTGGAAGTCGTCTTCAAATACTACAAACAGTCGCCCTCAAAAAACCCCGAAAACCTGTATTTCTTCAAAAAGCCTCTCCTGACGTGGCATTGCTTCGGTTGAGCGCGTCTTGTAGATGGCGTCCAGTGGAAGTGGGAAAGTTTGAATTTCGAATAGACGTTACTACGCCTCAGCCACCCTCGCTTACTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGAGTGTGTGTGTGTGTGTGTTTGTAGGCATCTGCATCTCAGCTGAGTCAACGGCTATCAACGCGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGCGGTGTGAACAGCGAGCGGAAGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCCTGGCTCGGCATCAACTCGGTGTACGTGCAGCTGCCGCTGCTGGTCGGTAACGCGCCGGAAGGCTGGAATCTGCCCTCCTACCTGGTGGTCATCATCCAGCTCGGAAACATCGGTCCAATCCTGTACACGGCCGCGCTGCGCATCAAGTCCTTCCGAGACTCCTACCTGATCATTGCGCTGCTCGTACTCGGGTCGTG]

[+] EMBL BM629338             [CCGGTGCGGATACACACAGACCGGTGCGAACGGTGCTACCGAACGGTTGCGTCCTTGGAAGTCGTCTTCAAATACTACAAACAGTCGCCCTCAAAAAACCCCGAAAACCTGTATTTCTTCAAAAAGCCTCTCCTGACGTGGCATTGCTTCGGTTGAGCGCGTCTTGTAGATGGCGTCCAGTGGAAGTGGGAAAGTTTGAATTTCGAATAGACGTTACTACGCCTCAGCCACCCTCGCTTACTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGAGTGTGTGTGTGTGTGTGTTTGTAGGCATCTGCATCTCAGCTGAGTCAACGGCTATCAACGCGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGCGGTGTGAACAGCGAGCGGAAGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCCTGGCTCGGCATCAACTCGGTGTACGTGCAGCTGCCGCTGCTGGTCGGTAACGCGCCGGAAGGCTGGAATCTGCCCTCCTACCTGGTGGTCATCATCCAGCTCGGAAACATCGGTCCAATCCTGTACACGGCCGCGCTGCGCATCAAGTCCTTCCGAGACTCCTACCTGATCATTGCGCTGCTCGTACTCGGGTCGTG]




>consensus_77#0
CCGGTGCGGATACACACAGACCGGTGCGAACGGTGCTACCGAACGGTTGCGTCCTTGGAA
GTCGTCTTCAAATACTACAAACAGTCGCCCTCAAAAAACCCCGAAAACCTGTATTTCTTC
AAAAAGCCTCTCCTGACGTGGCATTGCTTCGGTTGAGCGCGTCTTGTAGATGGCGTCCAG
TGGAAGTGGGAAAGTTTGAATTTCGAATAGACGTTACTACGCCTCAGCCACCCTCGCTTA
CTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGA
GTGTGTGTGTGTGTGTGTTTGTAGGCATCTGCATCTCAGCTGAGTCAACGGCTATCAACG
CGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGCGGTGTGAACAGCGAGCGGA
AGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCCTGGCTCGGCATCAACT
CGGTGTACGTGCAGCTGCCGCTGCTGGTCGGTAACGCGCCGGAAGGCTGGAATCTGCCCT
CCTACCTGGTGGTCATCATCCAGCTCGGAAACATCGGTCCAATCCTGTACACGGCCGCGC
TGCGCATCAAGTCCTTCCGAGACTCCTACCTGATCATTGCGCTGCTCGTACTCGGGTCGT
G

consensusID : consensus_77#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [CGAGGCAGAATCCGCACGATGATGGCGTCCAGTGGAAGTGGGAAAGTTTGAATTTCGAATAGACGCTACTACGCCTCAGCCACCCTCGCTTACTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGAGTGTGTGTGTGTGTGTGTTTGTAGGCACTCTGCATCTCAGCTGAGTCAACGGCTATCAACGCGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGGCGGGTGTGAACAGCGAGCGGAAGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCCATGGGCNTCGGCATCAACATCGGGTGTACGTGCAGCGTGCCGGCTG]

[+] EMBL BX466536             [CGAGGCAGAATCCGCACGATGATGGCGTCCAGTGGAAGTGGGAAAGTTTGAATTTCGAATAGACGCTACTACGCCTCAGCCACCCTCGCTTACTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGAGTGTGTGTGTGTGTGTGTTTGTAGGCACTCTGCATCTCAGCTGAGTCAACGGCTATCAACGCGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGGCGGGTGTGAACAGCGAGCGGAAGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCCATGGGCNTCGGCATCAACATCGGGTGTACGTGCAGCGTGCCGGCTG]




>consensus_77#1
CGAGGCAGAATCCGCACGATGATGGCGTCCAGTGGAAGTGGGAAAGTTTGAATTTCGAAT
AGACGCTACTACGCCTCAGCCACCCTCGCTTACTTTGCGGGTTTGCGCCATATCAGACCT
CCCGTAGACAAAGTGTAGCCCGCCAACAAAGAGTGTGTGTGTGTGTGTGTTTGTAGGCAC
TCTGCATCTCAGCTGAGTCAACGGCTATCAACGCGTTTGCCCCAACCATGAGAAAGAAGC
TGTACCTGCTGTGGCGGGTGTGAACAGCGAGCGGAAGCTGATCGTGGACCTACTCGCGAT
ACTGTTTGGCATCGGGTCCATGGGCNTCGGCATCAACATCGGGTGTACGTGCAGCGTGCC
GGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_77#0      CCGGTGCGGATACACACAGACCGGTGCGAACGGTGCTACCGAACGGTTGCGTCCTTGGAA 60
consensus_77#1      ------------------------------------------------------------
                                                                                

consensus_77#0      GTCGTCTTCAAATACTACAAACAGTCGCCCTCAAAAAACCCCGAAAACCTGTATTTCTTC 120
consensus_77#1      ------------------------------------------------------------
                                                                                

consensus_77#0      AAAAAGCCTCTCCTGACGTGGCATTGCTTCGGTTGAGCGCGTCTTGTAGATGGCGTCCAG 180
consensus_77#1      ---------------------------CGAGGCAGAATCCG-CACGATGATGGCGTCCAG 32
                                                  **  **   ** *  *  ************

consensus_77#0      TGGAAGTGGGAAAGTTTGAATTTCGAATAGACGTTACTACGCCTCAGCCACCCTCGCTTA 240
consensus_77#1      TGGAAGTGGGAAAGTTTGAATTTCGAATAGACGCTACTACGCCTCAGCCACCCTCGCTTA 92
                    ********************************* **************************

consensus_77#0      CTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGA 300
consensus_77#1      CTTTGCGGGTTTGCGCCATATCAGACCTCCCGTAGACAAAGTGTAGCCCGCCAACAAAGA 152
                    ************************************************************

consensus_77#0      GTGTGTGTGTGTGTGTGTTTGTAGGCA-TCTGCATCTCAGCTGAGTCAACGGCTATCAAC 359
consensus_77#1      GTGTGTGTGTGTGTGTGTTTGTAGGCACTCTGCATCTCAGCTGAGTCAACGGCTATCAAC 212
                    *************************** ********************************

consensus_77#0      GCGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGC--GGTGTGAACAGCGAGC 417
consensus_77#1      GCGTTTGCCCCAACCATGAGAAAGAAGCTGTACCTGCTGTGGCGGGTGTGAACAGCGAGC 272
                    *****************************************   ****************

consensus_77#0      GGAAGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCC-TGG--CTCGGCA 474
consensus_77#1      GGAAGCTGATCGTGGACCTACTCGCGATACTGTTTGGCATCGGGTCCATGGGCNTCGGCA 332
                    *********************************************** ***   ******

consensus_77#0      TCAACTC--GGTGTACGTGCAGC-TGCCGCTGCTGGTCGGTAACGCGCCGGAAGGCTGGA 531
consensus_77#1      TCAACATCGGGTGTACGTGCAGCGTGCCG--GCTG------------------------- 365
                    *****    ************** *****  ****                         

consensus_77#0      ATCTGCCCTCCTACCTGGTGGTCATCATCCAGCTCGGAAACATCGGTCCAATCCTGTACA 591
consensus_77#1      ------------------------------------------------------------
                                                                                

consensus_77#0      CGGCCGCGCTGCGCATCAAGTCCTTCCGAGACTCCTACCTGATCATTGCGCTGCTCGTAC 651
consensus_77#1      ------------------------------------------------------------
                                                                                

consensus_77#0      TCGGGTCGTG 661
consensus_77#1      ----------