These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1049 fasta sequence [CAGGCCAGAATCGCCACGAGGNTAAAAAGTGTAATACGGACGTTTCCTTCCGAAAAAAAGAGTATCACCAAGTGTGTTGCAATCAAGATTCAA-TGCTAA-AACTGTCCCCGGGTAGGCGTGGAA-TCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGATAAGAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGTGACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGACGGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGAACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACTACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAAAGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGCACCATGTTTAGGTAAAATAATTGTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGAAATTGTTTAGAAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTGATANGTAGTTTTCGTTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAG] [+] EMBL BX466632 [CAGGCCAGAATCGCCACGAGGNTAAAAAGTGTAATACGGACGTTTCCTTCCGAAAAAAAGAGTATCACCAAGTGTGTTGCAATCAAGATTCAACTGCTAAGAACTGTCCCCGGGTAGGCGTGGAAGTCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCT ] [+] EMBL BM626387 [ ccgCTTCCGAAAAAAAGAGTATCACCAAGTGTGTTGCAATCAAGATTCAA TGCTAA AACTGTCCCCGGGTAGGCGTGGAA TCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGATAAGAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGTGACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGACGGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCCTGTTCTGGGGCAACTGCGAGGGCCACACGTGC ] [+] EMBL BM580077 [ CCGGGTAGGCGTGGAA TCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGATAATAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGTGACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCTAGAGACGGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCA ] [+] EMBL BX624013 [ GCAAAAGGGTGACAAAAGCAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGACGGAAAGGNAAGAAAACACCAACACCACCACTCATCACCGCTGNCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGCCGACGGCGGGACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCGACGAACCCGGCCCTGATGCANACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACG ] [+] EMBL BX620338 [ TGGCATCGAGAGACGGAAAGGCAAGAAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGCCGACGGCGGGACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCGACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGAACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACTACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAAAGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGC ] [+] EMBL BX626666 [ GATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGAACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACTACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAAAGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGCACCATGTTTAGGTAAAATAATTGTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGAAATTGTTTAGAAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTGATANGTAGTTTTCGTTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAG] consensusID : consensus_7757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [CCGCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATGCGTGTTAATTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAACTAGCTTGAAGCGTGCGTGCAGACGAGCGCAGCATAAACATAAACATT] [+] EMBL BM602102 [CCGCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATGCGTGTTAATTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAACTAGCTTGAAGCGTGCGTGCAGACGAGCGCAGCATAAACATAAACATT] consensusID : consensus_7757#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGG] [+] EMBL BX623748 [TTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 CAGGCCAGAATCGCCACGAGGNTAAAAAGTGTAATACGGACGTTTCCTTCCGAAAAAAAG 60 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 AGTATCACCAAGTGTGTTGCAATCAAGATTCAATGCTAAAACTGTCCCCGGGTAGGCGTG 120 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 GAATCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGA 180 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 TAAGAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGT 240 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 GACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGAC 300 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 GGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACT 360 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 GTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAG 420 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 TGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCAT 480 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 GTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATC 540 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 TGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGC 600 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 TTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGA 660 consensus_7757#1 ------------------------------------------------------------ consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 ACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACT 720 consensus_7757#1 -----------------------------------CCGCCATTTCCACCGTTTTCTATCC 25 consensus_7757#2 ------------------------------------------------------------ consensus_7757#0 ACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCC 780 consensus_7757#1 AAAAATGGCCAAAGATTTAGACAAATGCGTGTTAATTGTGAGGGTG-------AGATGAA 78 consensus_7757#2 -----------------------------------TTGTGAGGGTG-------AGATGAA 18 consensus_7757#0 AAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAA 840 *********** ** **** consensus_7757#1 AGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAAT 138 consensus_7757#2 AGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAAT 78 consensus_7757#0 AGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGCACCATGTTTAGGTAAAATAAT 900 ******** ************** ** * **** ************************ consensus_7757#1 TCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTG 198 consensus_7757#2 TCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTG 138 consensus_7757#0 T---GTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGAAATTGTTTAGA---AAAAAATTTG 954 * ****************************** *********** ********** consensus_7757#1 CCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTT 258 consensus_7757#2 CCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTT 198 consensus_7757#0 CCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTGATANGTAG-TTTTC 1013 ********************************************* *** **** ** * consensus_7757#1 TGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAA 318 consensus_7757#2 TGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAA 258 consensus_7757#0 GTTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAG------------------------ 1049 ********************************** consensus_7757#1 AGGCGGTTGTGCTGTAAACGAGAGATATGATAAACTAGCTTGAA---------GCGTGCG 369 consensus_7757#2 AGGCGGTTGTGCTGTAAACGAGAGATATGATAAAATAATTCTGTTTTTTTTTTTCGTTTT 318 consensus_7757#0 ------------------------------------------------------------ consensus_7757#1 TGCAGACGAGCGCAGCAT-------AAACATAAACATT---------------------- 400 consensus_7757#2 AGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTT 378 consensus_7757#0 ------------------------------------------------------------ consensus_7757#1 --------------------- consensus_7757#2 TCGTTGTTTCACTCGTGTCGG 399 consensus_7757#0 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||