cluster # 781

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Anopheles gambiae
cluster # 781 cluster # 781 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_781#0 length = 634 sequences # 1

consensus_781#1 length = 623 sequences # 1

consensusID : consensus_781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCATACGAGATGTAAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACTACATTCAGATGGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACGACATCCACGTAAGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGGAACAATCACATAGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAATTCTTCCGCGCGATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTACAAAATCATCTCCCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTCGAGCAGCTGGAGTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC]

[+] EMBL BM607627             [AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCATACGAGATGTAAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACTACATTCAGATGGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACGACATCCACGTAAGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGGAACAATCACATAGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAATTCTTCCGCGCGATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTACAAAATCATCTCCCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTCGAGCAGCTGGAGTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC]




>consensus_781#0
AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTAAGCTTACCGC
GTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCATACGAGATGT
AAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAAT
GCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACC
GATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACTACATTCAGAT
GGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACGACATCCACGT
AAGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGGAACAATCACAT
AGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAATTCTTCCGCGC
GATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTACAAAATCATCTC
CCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTCGAGCAGCTGGA
GTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC

consensusID : consensus_781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCCTACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGTCCATGCCATGGAAGGGGAAAGCTAAGGCCGGGTTAAGCGACCGTTCGGATATTGGAGGGGGCTGCTCGTGCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAAAACAAAGACCACGCGCTTGCAGCGACCCGAACCGTTGGTAGTGTGCGTGACGACGCCGGCAACCGGGGAGGGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGCAGGGGAAGTTATCTTCGCCGCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACCGCTGCAGCAACCGCCGCCACCACCGCCGTCGTCGTGTTCGTGAA]

[+] EMBL BM579920             [CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTAAGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCCTACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATCCACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACAAAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGTCCATGCCATGGAAGGGGAAAGCTAAGGCCGGGTTAAGCGACCGTTCGGATATTGGAGGGGGCTGCTCGTGCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAAAACAAAGACCACGCGCTTGCAGCGACCCGAACCGTTGGTAGTGTGCGTGACGACGCCGGCAACCGGGGAGGGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGCAGGGGAAGTTATCTTCGCCGCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACCGCTGCAGCAACCGCCGCCACCACCGCCGTCGTCGTGTTCGTGAA]




>consensus_781#1
CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTA
AGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCC
TACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATC
CACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACA
AAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGTCCATGCCAT
GGAAGGGGAAAGCTAAGGCCGGGTTAAGCGACCGTTCGGATATTGGAGGGGGCTGCTCGT
GCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAAAACAAAGACC
ACGCGCTTGCAGCGACCCGAACCGTTGGTAGTGTGCGTGACGACGCCGGCAACCGGGGAG
GGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGCAGGGGAAGTTATCTTCGCC
GCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACCGCTGCAGCAACCGCCGCCACC
ACCGCCGTCGTCGTGTTCGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_781#0      ----------AAAGTGGACGGCAGAATCATTTCAGGAAGTGTTCTAAATTGCTTGCACTA 50
consensus_781#1      CCGGATCTTGAAAGTGGACGGCAGAATCATTTCAGGAAGCGTTCTAAATAGCTACAACTA 60
                               ***************************** ********* ***   ****

consensus_781#0      AGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCA 110
consensus_781#1      AGCTTACCGCGTGTCACTTTTGCTTATTTGGTGTCATTTTAGTCGAAACGCGCAAACTCC 120
                     *********************************************************** 

consensus_781#0      TACGAGATGTAAAGGGAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATC 170
consensus_781#1      TACGAGATGTAAAGGAAGACAAATCAATACTGGTGGTGTTGTGTTCGACGAGGATCAATC 180
                     *************** ********************************************

consensus_781#0      CACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACA 230
consensus_781#1      CACTCACAATGCTAGATGATGAAGTGCGGAGAAAGATTTCACACTAGAGATACTTCCACA 240
                     ************************************************************

consensus_781#0      AAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGGGAATTCTACT 290
consensus_781#1      AAATATTACCGATATTCGACACCACACCGAGAACTACCACTGATGTCAGG----TCCATG 296
                     **************************************************    ** *  

consensus_781#0      ACATTCAGATGGAGAAGTACGCCAGACAGGCAGTAAGCGAGGGCATGAAGAACGCAGACG 350
consensus_781#1      CCATGGAAGGGGAAAGCTA----AGGCCGG-GTTAAGCGACCGTTCGGATATTGGAGGGG 351
                      ***  *   *** *  **    ** * **   *******  *   * * *  * **  *

consensus_781#0      ACATCCACGTA-AGCAATGACAGCGAGATTTACCGCGTGCTCAACCTACACTACAATCGG 409
consensus_781#1      GC-TGCTCGTGCAGCAGCAGCAGTACGAAAAAGACGACGCTAAGGAATCGCCGTGCGCAA 410
                      * * * ***  ****    ***   **   *      *** *     * *      *  

consensus_781#0      AACAATCACATAGAGGTGCCCCAAAATTTCCGATACGTCGTTGAGCAGACGTTGCGTGAA 469
consensus_781#1      AACAAAGACC---ACGCGCTTGCAGCGACCCGAACCGTTGGT-AGTG-----TGCGTGAC 461
                     *****  **    * * **    *     ****  *** * * **       ******* 

consensus_781#0      TTCTTCCGCGCGATTCAAGGCGGCAAGGACACCGAGCAGTCGTGGAAAAAATCAATTTAC 529
consensus_781#1      GACGCCGGCAACCGGGGAGGGGAACGGTTCCCCCACCCGCTTGACAGCGGTCTATTTTGC 521
                       *  * **        *** *    *  * ** * * *      *       * *** *

consensus_781#0      AAAATCATCTCCCGAATGGATGATCCTGTGCCGGAGTATTTCAAATCTCCGAACTTCCTC 589
consensus_781#1      AGGGGAAGTTATC--TTCGCCGCCTTTGTCGTCGTCTTTGTCGTTGCCACCACCACCACC 579
                     *     *  *  *   * *  *    ***    *  * * **    *  * * *  *  *

consensus_781#0      GA-GCAGCTGGAGTAAGTTAAGCGGGCGGGGTCCCGTTACTAATAC 634
consensus_781#1      GCTGCAGCAACCGCCGCCACCACCGCCGTCGTCGTGTTCGTGAA-- 623
                     *  *****    *         * * **  ***  ***  * *