|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 996 fasta sequence
[ATCGCCCGAGGTTAGTCCGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGAC-GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA-----AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATG-AAGAACT-CCTTCGTCTAGCTTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCCTCTCGACGCATATTTATAATATTTAAGCCTCTCAAAGCGATGGCTACGCGAAGCGCGCATTGCTACCACCCAATGCAACACGTCACGATATTCATGACAAACTTCATAGCTGCCTTCAGCCAAGAATAGAGATCACGTTTACGACAACCACTAAACAAAAAGCAGTAAAGAAAGCGCAACCAACATAGA]
[+] EMBL AL932195 [ATCGCCCGAGGTTAGTCCGGTTTGGTTTGTGGTGTGGTGC TTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGACGGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCT ]
[+] EMBL BX628755 [ CGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATG AAGAACT CCTTCGTCTAGCTTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCCTC ]
[+] EMBL BX610115 [ GTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGACTTTTTCCCC CGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAAAAACTAAATCAGTGAAGAAAGAATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCTTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAAATCTACGAAGGCATCAAACGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACC ]
[+] EMBL BX621160 [ CTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGNCAGGTGGCTTCGTTCAATGAAAGAACTCCCTTCGTCTAGCTTCGTTCGTAGCGT ]
[+] EMBL BX627331 [ TTTGTGATTTTTCCCCCGACGTTACCGAC GGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAA AAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGGCATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACNACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGNGACCAACCGNCAGGTGGCTTCGTTCAATG AAGAACT CCT ]
[+] EMBL BX610451 [ TCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCTTTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAAATCTACGAAGGCATCAAACGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAGACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACCCTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATG AAGAACT CCTTCGCCTAGCTTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCCTCTCGACGCATATTTATAATATTTAAGCCTCTCAAAGCGATGGCTACGCGAAGCGCGCATTGCTACCACCCAATGCAACACGTCACGATATTCATGACAAACTTCATAGCTGCCTTCAGCCAAGAATAGAGATCACGTTTACGACAACCACTAAACAAAAAGCAGTAAAGAAAGCGCAACCAACATAGA]
consensusID : consensus_7811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[CAGATCNCCACGAGNTCTTTCTTCAAACAACAAGTGGCGTTCCGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGCAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACCGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCATGTGCCGCCAGCAA]
[+] EMBL BX467311 [CAGATCNCCACGAGNTCTTTCTTCAAACAACAAGTGGCGTTCCGGTTTGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTGATTTTTCCCCCGACGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATTGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAAAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACGCGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCATCCGAATGGCAATCTTGGTCCAACAGGGCGCCTACTCGTACGAAGCCCCCAACGGTGACGTCATCCAGGTGCAGTATACCGGCCGACGAGAATGGGTTCCGTGTGCAGAGCGACAGCCTGCCGACGCCACCCCATGTGCCGCCAGCAA]
consensusID : consensus_7811#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[CACAATCGCCNAGGTTATTCAAACAACAAGTGGCGTTCGGCTTCGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTAGATNTTTTCCCCCGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATAAGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAACAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTATGCGTATCCGCAGCATGAACATCATGAACGCCACGAGCATCACGAAACAACCACGGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGGTACGAAGNCCCCGAACGGACGTCATCCAGGTGCAGTATACCGGCGACGAGAACTGGATTCCG]
[+] EMBL AL933372 [CACAATCGCCNAGGTTATTCAAACAACAAGTGGCGTTCGGCTTCGGTTTGTGGTGTGGTGCTTTCGGGCTTTGGCGATTTTGTAGATNTTTTCCCCCGTTACCGACGGTGGTTGAGAAACAAATCCCTGTGCAGAGCGCAGGATAAGTGTGTTGTGAAAAAATCAGTGAAGAAAGCATAGTTTGGGCAACAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTATGCGTATCCGCAGCATGAACATCATGAACGCCACGAGCATCACGAAACAACCACGGTACATTCCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAGACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACATCCGAATGGAATCTTGGTCCAACAGGGCGCCTACTCGGTACGAAGNCCCCGAACGGACGTCATCCAGGTGCAGTATACCGGCGACGAGAACTGGATTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7811#1 CAGATCNCCACGAGNTCTTTCTTCAAACAACAAGTGGCGTTCCGGTTTGGTTTGTGGTGT 60
consensus_7811#2 CACAATCGC-CNAGGT---TATTCAAACAACAAGTGGCGTTCGGCTTCGGTTTGTGGTGT 56
consensus_7811#0 -------------------------ATCGCCCGAGGTTAGTCCGGTTTGGTTTGTGGTGT 35
* * * * ** * ** ************
consensus_7811#1 GGTGCTTTCGGGCTTTGGCGATTTTGT-GATTTTTCCCCCGACGTTACCGACGGTGGTTG 119
consensus_7811#2 GGTGCTTTCGGGCTTTGGCGATTTTGTAGATNTTTTCCCC--CGTTACCGACGGTGGTTG 114
consensus_7811#0 GGTGCTTTCGGGCTTTGGCGATTTTGT-GATTTTTCCCCCGACGTTACCGACGGTGGTTG 94
*************************** *** *** **** ******************
consensus_7811#1 AGAAACAAATCCCTGTGCAGAGCGCAGGATT-GTGTGTTGTGAAAAAATCAGTGAAGAAA 178
consensus_7811#2 AGAAACAAATCCCTGTGCAGAGCGCAGGATAAGTGTGTTGTGAAAAAATCAGTGAAGAAA 174
consensus_7811#0 AGAAACAAATCCCTGTGCAGAGCGCAGGATT-GTGTGTTGTGAAAAAATCAGTGAAGAAA 153
****************************** ****************************
consensus_7811#1 GCATAGTTTGGGCAA-AATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACG 237
consensus_7811#2 GCATAGTTTGGGCAACAATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTATG 234
consensus_7811#0 GCATAGTTTGGGCAA-AATGAAGCTTTTGATTGTACTCGCACTGGTTGCATCCGCTTACG 212
*************** ****************************************** *
consensus_7811#1 CGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACG-TACATT 296
consensus_7811#2 CGTATCCGCAGCATGAACATCATGAACGCCACGAGCATCACGAAACAACCACGGTACATT 294
consensus_7811#0 CGTATCCGCAGCATGAACATCATGAACGTCACGAGCATCACGAAACAACCACG-TACATT 271
**************************** ************************ ******
consensus_7811#1 CCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAG 356
consensus_7811#2 CCGATCCTAAAGTATGACAAACAACAGGGAGAGGATGGCAGTTATAGAACTATCTACCAG 354
consensus_7811#0 CCGATCCTAAAGTATGACAAACAACAGGGAGAAGATGGCAGTTATAGAACTATCTACCAG 331
******************************** ***************************
consensus_7811#1 ACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCAT 416
consensus_7811#2 ACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGAC-AT 413
consensus_7811#0 ACGGGCAACAACATTGTTCACGAAGAGTCCGGCTACCTGAAGGACGCTTCGGAAGACCAT 391
********************************************************* **
consensus_7811#1 CCGAATGGCAATCTTGGTCCAACAGGGCGCCTACTCG-TACGAAGCCCCCAACGGTGACG 475
consensus_7811#2 CCGAATGG-AATCTTGGTCCAACAGGGCGCCTACTCGGTACGAAGNCCCCGAACG-GACG 471
consensus_7811#0 CCGAATGG-AATCTTGGTCCAACAGGGCGCCTACTCG-TACGAAGCCCCCAACGGTGACG 449
******** **************************** ******* **** * * ****
consensus_7811#1 TCATCCAGGTGCAGTATACCGGCCGACGAGAA-TGGGTTCCGTGTGCAGAGCGACAGCCT 534
consensus_7811#2 TCATCCAGGTGCAGTATACCGGC-GACGAGAACTGGATTCCG------------------ 512
consensus_7811#0 TCATCCAGGTGCAGTATAC-GGCCGACGAGAA-TGGGTTCCGTGTGCAGAGCGACAGCCT 507
******************* *** ******** *** *****
consensus_7811#1 GCCGACGCCACCCCATGTGCCGCCAGCAA------------------------------- 563
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 GCCGACGCCACCCCCTGTGCCGCCAGCAATCCAGGAAGGTCTGAAGGAGATCTACGAGGG 567
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 CATCAAGCGCCGGGAGCAGGAAGCGAAGAACAATCCCAAGTACGCGGAGGACGAAGCCAG 627
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 ACGGGCTCAGCTAGACTACAACGGACAGTACTACAACCAGTAGAGCCGGTGTGGTGTACC 687
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 CTCTTGTACGGTGACCAACCGCCAGGTGGCTTCGTTCAATGAAGAACTCCTTCGTCTAGC 747
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 TTCGTTCGTAGCGTGCACGAGCTGTTAAGAAAGCGTTCTAGCGCTGTTCAGTAGATTTCC 807
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 TCTCGACGCATATTTATAATATTTAAGCCTCTCAAAGCGATGGCTACGCGAAGCGCGCAT 867
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 TGCTACCACCCAATGCAACACGTCACGATATTCATGACAAACTTCATAGCTGCCTTCAGC 927
consensus_7811#1 ------------------------------------------------------------
consensus_7811#2 ------------------------------------------------------------
consensus_7811#0 CAAGAATAGAGATCACGTTTACGACAACCACTAAACAAAAAGCAGTAAAGAAAGCGCAAC 987
consensus_7811#1 ---------
consensus_7811#2 ---------
consensus_7811#0 CAACATAGA 996
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||