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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1720 fasta sequence
[CCGCCCACGCGTCCGGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAGTGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTACAGTGATGGAGAGATAAGCATATGTATGGAATACATGGATGGTGGCTCATTAGACCTAATTTTAAAACGAGCAGGAAGAATCCCGGAAGCTATTTTGGCAAAAATAACATCGGCAGTACTGAAAGGACTAAGCTATCTGAGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGCAGTGGAGAGATAAAGATTTGTGATTTCGG-GTTTCCGGTCAGTTGATTGATTCAATGGCCAATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATTCTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGTATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAGACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGGACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAATTCTTTTACCGACCGTTTTAAAAATTTTGTTGATCTTTGTCTAAAGAAGAACCCCGAGGAGCGTGCAGATTTAAAAACACTCATGAATCACGAATGGATTAAAAACATTGAAACGGAGGACGTTGACTATTGCAGGATGGGTGTGTAAAACCATGGATCTTGCACCATCTACGCCCAAAAGAAACGCGTCACCATTTTCAAATTAATTCGTGCAAGGGTTANCGAGATTGGATGGGGGAGCTTANAATTGGATCGACGTATTGGAAGGTCATACCACGAACAANTTACTTTGACGTCCAATGGTTANACCGAAGAAATACTTCGGTATGTTATATAACATTGACATATTACTATCCATAGTGCCATAGTACCTAAAAAATTTTAATTNGTAGCGGGAAAGNACGACATCAAAACTGGTCTNCACCTGACCACNTAGTGTNCNCAAAGTNNNTGTTC]
[+] EMBL BM606635 [CCGCCCACGCGTCCGGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAcgta ]
[+] EMBL BM633807 [ ccGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAGTGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTAC ]
[+] EMBL BX621627 [ GCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAGTGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTACAGTGATGGAGAGATAAGCATATGTATGGAATACATGGATGGTGGCTCATTAGACCTAATTTTAAAACGAGCAGGAAGAATCCCGGAAGCTATTTTGGCAAAAATAACATCGGCAGTACTGAAAGGACTAAGCTATCTGAGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGCAGTGGAGAGATAAAGATTTGTGATTTCGG GTTTCCGGTCAGTTGATTGATTCAATGGCCAATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATTCTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGTATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAGACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGGACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAA ]
[+] EMBL AL932469 [ atgcccgaGGTAATACTGAAAGGACTAAGCTATCTGAGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGCAGTGGAGAGATAAAGATTTGTGATTTCGGCGTTTCCGGTCAGTTGATTGATTCAATGGCCAATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATTCTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGTATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAGACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGGACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAATTCTTTTACCGACCGTTTTAAAAATTTTGTTGATCTTTGTCTAAAGAAGAACCCCGAGGAGCGTGCAGATTTAAAAACACTCATGAATCACGAATGGATTAAAAACATTGAAACGGAGGACGTTGACTATTGCAGGATGGGTGTGTAAAACCATGGATCTTGCACCATCTACGCCCAAAAGAAACGCGTCACCATTTTCAAATTAATTCGTGCAAGGGTTANCGAGATTGGATGGGGGAGCTTANAATTGGATCGACGTATTGGAAGGTCATACCACGAACAANTTACTTTGACGTCCAATGGTTANACCGAAGAAATACTTCGGTATGTTATATAACATTGACATATTACTATCCATAGTGCCATAGTACCTAAAAAATTTTAATTNGTAGCGGGAAAGNACGACATCAAAACTGGTCTNCACCTGACCACNTAGTGTNCNCAAAGTNNNTGTTC]
consensusID : consensus_7832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 667 fasta sequence
[CCGGTCAGTTTTCCAAATTCATAGAACAGCGAAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGGACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAG]
[+] EMBL BM618292 [CCGGTCAGTTTTCCAAATTCATAGAACAGCGAAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACT ]
[+] EMBL BM643512 [ ccgGAAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGG ]
[+] EMBL BX606893 [ AAAATCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTGCAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGGCAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGA ]
[+] EMBL BM656460 [ ccgCGAAAAATCTTTGCAGATTTGCTCAAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTATACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGTAACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGATTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACAAAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAAACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACACAATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTTGAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATTGGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGAGTTGTAATGAAGGGACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACACCTAGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7832#0 ------------------------------------CCGCCCACGCGTCCGGATTTGCTC 24
consensus_7832#1 CCGGTCAGTTTTCCAAATTCATAGAACAGCGAAAATCGAAAAATCTTTGCAGATTTGCTC 60
* * * * *********
consensus_7832#0 AAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTAT 84
consensus_7832#1 AAGCAAAAATACTTTCTGCAGTCGTTTTGTATCAAGATATATTTTACTATTTTTTTCTAT 120
************************************************************
consensus_7832#0 ACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGT 144
consensus_7832#1 ACATACGATCTGTGAAACGTGTTATACGTGCGTAGTTCGGTTAAGATAAACAAGTTTTGT 180
************************************************************
consensus_7832#0 AACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGA 204
consensus_7832#1 AACTATAATTTGTTTTCGTACAGATCTTCTACTATCTGCTATTTGGCACCTTGTATCGGA 240
************************************************************
consensus_7832#0 TTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACA 264
consensus_7832#1 TTAGTTCCAGTTAATACACCCAAGGACACATTTCTTGTAATATCAATGAGTAAAATGACA 300
************************************************************
consensus_7832#0 AAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAA 324
consensus_7832#1 AAAAACAAACTCAATTTGACGTTGCCACCTGGTTCCGTGGATGTTCCTGCTGGACAACAA 360
************************************************************
consensus_7832#0 ACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACAC 384
consensus_7832#1 ACAACGCCAACACCCTCCTTTAAAACTCCATCAGGTACCGAATACGTGATTGGAAAACAC 420
************************************************************
consensus_7832#0 AATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTT 444
consensus_7832#1 AATCTTTTGGGAAAAGCTAAGAACAGCATCGATGCACTTACCGAAACATTGGAAGAACTT 480
************************************************************
consensus_7832#0 GAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATT 504
consensus_7832#1 GAAATGGAAGAAAGTGCACGTAAACGCATTAAAGTGTTTCTCAGTCAAAAAGAAAAAATT 540
************************************************************
consensus_7832#0 GGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGA 564
consensus_7832#1 GGCGAACTCAGTGATGAGGATTTAGAGAAACTAGGCGAGTTGGGTTCCGGAAATGGGGGA 600
************************************************************
consensus_7832#0 GTTGTAATGAAGGTACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACAC 624
consensus_7832#1 GTTGTAATGAAGGGACGTCACATTCCTACGCAGCTCATAATGGCACGCAAATTGATACAC 660
************* **********************************************
consensus_7832#0 CTAGAAGTAAAACCTGCAATCAAAAAGCAGATTATACGAGAACTTAAGGTATTACACGAG 684
consensus_7832#1 CTAGAAG----------------------------------------------------- 667
*******
consensus_7832#0 TGTAATTTTCCGCACATAGTTGGATTCTATGGCGCATTCTACAGTGATGGAGAGATAAGC 744
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 ATATGTATGGAATACATGGATGGTGGCTCATTAGACCTAATTTTAAAACGAGCAGGAAGA 804
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 ATCCCGGAAGCTATTTTGGCAAAAATAACATCGGCAGTACTGAAAGGACTAAGCTATCTG 864
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 AGAGATAAGCATGCCATTATGCATAGGGATGTTAAACCGAGCAACATTCTTGTAAATAGC 924
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 AGTGGAGAGATAAAGATTTGTGATTTCGGGTTTCCGGTCAGTTGATTGATTCAATGGCCA 984
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 ATTCTTTTGTAGGTACTCGAAGTTATATGTCGCCCGAGCGCTTACAAGGAACGCATTATT 1044
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 CTGTTCAATCTGACATATGGTCACTGGGACTCTCTTTAGTTGAAATGGCGATTGGAATGT 1104
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 ATCCGATTCCTCCTCCAGATGCAAAAACATTAGATTTAATATTTCAGGAGCGTGGAGAAG 1164
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 ACTGCTCTCCTGGACAAAGCATAATAGAACCTAAACCAATGGCTATTTTCGAACTACTGG 1224
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 ACTACATTGTAAACGAACCTCCGCCTAAGTTAGAGCACAATTCTTTTACCGACCGTTTTA 1284
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 AAAATTTTGTTGATCTTTGTCTAAAGAAGAACCCCGAGGAGCGTGCAGATTTAAAAACAC 1344
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 TCATGAATCACGAATGGATTAAAAACATTGAAACGGAGGACGTTGACTATTGCAGGATGG 1404
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 GTGTGTAAAACCATGGATCTTGCACCATCTACGCCCAAAAGAAACGCGTCACCATTTTCA 1464
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 AATTAATTCGTGCAAGGGTTANCGAGATTGGATGGGGGAGCTTANAATTGGATCGACGTA 1524
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 TTGGAAGGTCATACCACGAACAANTTACTTTGACGTCCAATGGTTANACCGAAGAAATAC 1584
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 TTCGGTATGTTATATAACATTGACATATTACTATCCATAGTGCCATAGTACCTAAAAAAT 1644
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 TTTAATTNGTAGCGGGAAAGNACGACATCAAAACTGGTCTNCACCTGACCACNTAGTGTN 1704
consensus_7832#1 ------------------------------------------------------------
consensus_7832#0 CNCAAAGTNNNTGTTC 1720
consensus_7832#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||