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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1789 fasta sequence
[TGGTTTTTTTGTTGGTTTTTTTTATTTTCATTAAATTGGTTAGTATTTTAGTCGAGAGTATTACTAATATATTGCTGTGCCATAAAGACCAATACACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGGCCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTTACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCTGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCGCCACAGTTTTCAAACACCACACTATCGCCCACGTTCAGCTCGGGCAGCATCACGTCGGGCAGGATCAGATCCATCACGTCGCACGTTGGGCCCCAAACCGACGTGGGGAAGTCTTTCGCACCGGTCTTGCGCTCCACGATCGGTATCGCTGGCTGTGCCTCGTGGGCAGTGCAGTAGAACGTCCCGAAGATGCCATCGTTCAGATAGTAATACATTCGCGTTTTCTCCGTACCATCCGGCTGCTTTTCCTTCATCACGCGCTTCGAGTCCACGAACGATACCAGCGTCACCGCCGACGACACAAAGTACCGGCCCGGCTCGGCAATGATGCGAATGTCCGACTCCGCGGGGAAGAATTGATCGATTGCCACGTTCACCGCCTGCGCGTACCGATCGATCGGTTTATCATTATCGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGTACTCGAACAAACCCTTCGCTATCTTCACCGCCTCATAATACACCTCGTGCTCGTCGCAGTCCGACCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCAGCAGCTCGGG-GCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG-CGCAAAGATG-ATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCT-GGCTGCCGG]
[+] EMBL CNS09FIH [TGGTTTTTTTGTTGGTTTTTTTTATTTTCATTAAATTGGTTAGTATTTTAGTCGAGAGTATTACTAATATATTGCTGTGCCATAAAGACCAATACACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGGCCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTTACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCTGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCGCCACAGTTTTCAAACACCACACTATCGCCCACGTTCAGCTCGGGCAGCATCACGTCGGGCAGGATCAGATCCATCACGTCGCACGTTGGGCCCCAAACCGACGTGGGGAAGTCTTTCGCACCGGTCTTGCGCTCCACGATCGGTATCGCTGGCTGTGCCTCGTGGGCAGTGCAGTAGAACGTCCCGAAGATGCCATCGTTCAGATAGTAATACATTCGCGTTTTCTCCGTACCATCCGGCTGCTTTTCCTTCATCACGCGCTTCGAGTCCACGAACGATACCAGCGTCACCGCCGACGACACAAAGTACCGGCCCGGCTCGGCAATGATGCGAATGTCCGACTCCGCGGGGAAGAATTGATCGATTGCCACGTTCACCGCCTGCGCGTACCGATCGATCGGTTTATCATTATCGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGTACTCGAACAAACCCTTCGCTATCTTCACCGC ]
[-] EMBL CNS09FIG [ ATCGATTGCCACGTTCACCG CTGCGCGTACCGATCGATCGGTTTATCATTATCGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGTACTCGAACAAACCCTTCGCTATCTTCACCGCCTCATAATACACCTCGTGCTCGTCGCAGTCCGACCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCAGCAGCTCGGG GCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCC GCTGTCGCAAAGATGTATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGAACGGTGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAG G TTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCT GGCTGC ]
[-] EMBL BM637598 [ GTCACAGTCCGATCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCAGCAGCTCGGGCGCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCATACCTTCAGTGAGTCGTGGCGCATGCGCAGTACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTTTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGGATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCcgg ]
[-] EMBL BM644552 [ CACCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCTGGGCTGCCGG]
[-] EMBL BM647610 [ CCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGTACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTTTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGGATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCAAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACACCGATGCTGGGCTGCCGG]
[-] EMBL BM616255 [ ATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCT GGCgg ]
[-] EMBL BM637582 [ TCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCAAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACACCGATGCT GGCgg ]
consensusID : consensus_7834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[ACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGACCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTAACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCAGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCNCACCTCGNGGGC]
[-] EMBL AL932481 [ACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGACCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTAACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCAGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCNCACCTCGNGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7834#0 TGGTTTTTTTGTTGGTTTTTTTTATTTTCATTAAATTGGTTAGTATTTTAGTCGAGAGTA 60
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 TTACTAATATATTGCTGTGCCATAAAGACCAATACACCTCGTAATAATGCCCTGAGCGAC 120
consensus_7834#1 -----------------------------------ACCTCGTAATAATGCCCTGAGCGAC 25
*************************
consensus_7834#0 CTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAAACA 180
consensus_7834#1 CTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAA-CA 84
********************************************************* **
consensus_7834#0 GTAGTACAACCCGAACAAGAGTTGCGGGCCAGGTAACATAATGCAAACTTAACTGCCATT 240
consensus_7834#1 GTAGTACAACCCGAACAAGAGTTGCGGACCAGGTAACATAATGCAAACTTAACTGCCATT 144
*************************** ********************************
consensus_7834#0 GGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGA 300
consensus_7834#1 GGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGA 204
************************************************************
consensus_7834#0 TGGGAGTGTAACTGCTCTCGTGCGTTACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGC 360
consensus_7834#1 TGGGAGTGTAACTGCTCTCGTGCGTAACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGC 264
************************* **********************************
consensus_7834#0 GGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCTGTATTTTCCAGGTACCTTCGC 420
consensus_7834#1 GGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCAGTATTTTCCAGGTACCTTCGC 324
************************************** *********************
consensus_7834#0 GCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCC 480
consensus_7834#1 GCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCC 384
************************************************************
consensus_7834#0 CGTACGCGCCACAGTTTTCAAACACCACACTATCGCCCACGTTCAGCTCGGGCAGCATCA 540
consensus_7834#1 CGTACGCN---CACCTCGNGGGC------------------------------------- 404
******* ** * *
consensus_7834#0 CGTCGGGCAGGATCAGATCCATCACGTCGCACGTTGGGCCCCAAACCGACGTGGGGAAGT 600
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CTTTCGCACCGGTCTTGCGCTCCACGATCGGTATCGCTGGCTGTGCCTCGTGGGCAGTGC 660
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 AGTAGAACGTCCCGAAGATGCCATCGTTCAGATAGTAATACATTCGCGTTTTCTCCGTAC 720
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CATCCGGCTGCTTTTCCTTCATCACGCGCTTCGAGTCCACGAACGATACCAGCGTCACCG 780
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CCGACGACACAAAGTACCGGCCCGGCTCGGCAATGATGCGAATGTCCGACTCCGCGGGGA 840
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 AGAATTGATCGATTGCCACGTTCACCGCCTGCGCGTACCGATCGATCGGTTTATCATTAT 900
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGT 960
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 ACTCGAACAAACCCTTCGCTATCTTCACCGCCTCATAATACACCTCGTGCTCGTCGCAGT 1020
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CCGACCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCA 1080
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 GCAGCTCGGGGCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCGTAC 1140
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAAT 1200
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTA 1260
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CAGCAGCGACGGGATCGATTTGGCCGGCTGCGCAAAGATGATGCTCTCCGGCTTCACCCC 1320
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 GTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGT 1380
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCAC 1440
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 GCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCAC 1500
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 GTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGA 1560
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTC 1620
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTT 1680
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 CCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGA 1740
consensus_7834#1 ------------------------------------------------------------
consensus_7834#0 ACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCTGGCTGCCGG 1789
consensus_7834#1 -------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||