cluster # 7835

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Anopheles gambiae
cluster # 7835 cluster # 7835 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7835#0 length = 802 sequences # 3

consensus_7835#1 length = 692 sequences # 5

consensusID : consensus_7835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 802
fasta sequence

                              [CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAAT---CAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCA------ACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATTTTAATCAAGG----AAAGTTAAGG-CCCAGAAAGTACAAGACACACACACGCTGCTCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGGCGAGAAAAGGAGCACAAACCGATTTTCGGG]

[+] EMBL BM591287             [CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAAT   CAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCA      ACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATA                                                                                                                                             ]
[+] EMBL BM618067             [                  ccgGCAACATCCTCTCGTTACATGAAAAT   CAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCA      ACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAA TTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATTTTAATCAAGG    AAAGTTAAGG CCCAGAAAGTACAAGACACACACACGCTGCTCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGGCGAGAAAAGGAGCACAAACCGATTTTCGGG]
[+] EMBL BM599780             [                          ccgCTCTCGTTACATGAAAATCAGCAGCAAACTCGCATCAAACGGCGA   AACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTTTTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAACACACACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATTTTAATCAAGGAAGAAAAGTTAAGGTCCCAGAAAGTACAAGA                                                                                                ]




>consensus_7835#0
CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCA
TCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAG
ATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGA
GACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAG
AAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCA
TAAGTCAACCTGCAACACACACACAACCCCAAGTTTGAAAAAGGAAATGAGGAAACATTG
ATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTT
CAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACAC
GGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTC
AACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAAC
CGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAA
ATAATACATTTTAATCAAGGAAAGTTAAGGCCCAGAAAGTACAAGACACACACACGCTGC
TCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGGCGAGAAAA
GGAGCACAAACCGATTTTCGGG

consensusID : consensus_7835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 692
fasta sequence

                              [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATA--GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC-------C-CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGC-AAAAAACCGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAAGAATACATTTTAATCGAAGAAGGAAAAGAAAAGTAAGA]

[+] EMBL BM615748             [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATA  GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC       C CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGC AAAAAACCGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAAGAATACATTTTAATCGAAGAAGGAAAAGAAAAGTAAGA]
[+] EMBL BM633895             [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACAC  AGAGAGAGAGAGAGAGAGATA  GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC       C CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGC AAAAAACCGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAATAATACATT                             ]
[+] EMBL BM619820             [CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATA  GACAGTGTGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACAC       C CAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAAACCGACGACGACGAC                                                                                ]
[+] EMBL BM580505             [    ccgGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGGCGAAACAACAAGAGACAGAGAGAGAGAGAGAAAGAGAGATATTGACAGTGAGCGAGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAA  AGAGACGTGTTAAAATCAGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAAAGAAACGTAAAAAAAGTGTTTTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTCAACCTGCAGCACACACACACACACACACACACAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTG                                                                                                             ]
[+] EMBL BX612609             [                                                                                                                         GAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGGGTTAAAATCCGATTTTTTAACAAAAGCTCAAGGGACACTGCTGAATGGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_7835#1
CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCATCAAACGG
CGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATAGACAGTGTGCGAGATACAG
AGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGAGAGACGTG
TTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAGAGAAACGA
CAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGCCATAAGTC
AACCTGCAGCACACACACACACCCAACCCCAAGTTTGGAAAGGAAATGAGGAAACATTGA
TTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTTTGCTAGTTC
AGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGACACAACACG
GTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACACCCCGTTTCA
ACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGGCAAAAAACC
GACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGAAATTACAAAGAATAC
ATTTTAATCGAAGAAGGAAAAGAAAAGTAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7835#0      CCGCCCACGCGTCCGGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCA 60
consensus_7835#1      --------CCGAATTGAACAAGCAACATCCTCTCGTTACATGAAAATCAGCAAACTCGCA 52
                               **    *********************************************

consensus_7835#0      TCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGA--TAGACAGTGTGCG 118
consensus_7835#1      TCAAACGGCGAAACAACAAGAGACACAGAGAGAGAGAGAGAGAGAGATAGACAGTGTGCG 112
                      *********************************************  *************

consensus_7835#0      AGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGA 178
consensus_7835#1      AGATACAGAGAGTTTTATTAGTAAGGAAAGCGTTTAAAGCAGCACGCAAAGTAGCAAAGA 172
                      ************************************************************

consensus_7835#0      GAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAG 238
consensus_7835#1      GAGACGTGTTAAAATCCGATTTTTTAACAAAAGCTCAAGTGACACTGCTGAATGGGAAAG 232
                      ************************************************************

consensus_7835#0      AGAAACGGCAAAATAGTGTATTTGTGCGACAAAGTGAGTGTCTGAAAATTCCGGCCCTGC 298
consensus_7835#1      AGAAACGACAAAAAAGTGTATTTGTGCGACGAAGTGAGTGTCTGAAAATTCCGGCCCTGC 292
                      ******* ***** **************** *****************************

consensus_7835#0      CATAAGTCAACCTGCAACACACACACA------ACCCCAAGTTTGAAAAAGGAAATGAGG 352
consensus_7835#1      CATAAGTCAACCTGCAGCACACACACACACCCAACCCCAAGTTTGGAAA-GGAAATGAGG 351
                      **************** **********      ************ *** **********

consensus_7835#0      AAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTT 412
consensus_7835#1      AAACATTGATTTTTCCCGTTTTCTTCGCATCCAATTTGCAAAGTAATAATACGGGGCTTT 411
                      ************************************************************

consensus_7835#0      TGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGA 472
consensus_7835#1      TGCTAGTTCAGCGGTTGACAGGTTCTCTGCTTCATGTTTGACGTTTGTCAGGTACAGGGA 471
                      ************************************************************

consensus_7835#0      CACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACAC 532
consensus_7835#1      CACAACACGGTACAGCGGCGAAAGCGCAAGCGAAGTGGGCTGGAAAAATCGTTGTGACAC 531
                      ************************************************************

consensus_7835#0      CCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGG 592
consensus_7835#1      CCCGTTTCAACCCAACCCCGTGTGAAGGCGTAAGTGTGTATTGTGCGTGCGTGTTCGAGG 591
                      ************************************************************

consensus_7835#0      CAAAAAACCGACGACGACGACGACGACACGATCGATCCAAGTGATAATCAAGTGCTGTGA 652
consensus_7835#1      CAAAAAACCGACGACGACGAC------ACGATCGATCCAAGTGATAATCAAGTGCTGTGA 645
                      *********************      *********************************

consensus_7835#0      AATTACAAATAATACATTTTAATCAAGGAAAGTTAAGGCCCAGAAAGTACAAGACACACA 712
consensus_7835#1      AATTACAAAGAATACATTTTAATCGAAGAAGGAAAAG-----AAAAGTAAGA-------- 692
                      ********* ************** * *** *  ***      ******  *        

consensus_7835#0      CACGCTGCTCACTACAAGCAGCAGAGCACAAGCTGGACAGTTCAAATAGCATTACTAAGG 772
consensus_7835#1      ------------------------------------------------------------
                                                                                  

consensus_7835#0      CGAGAAAAGGAGCACAAACCGATTTTCGGG 802
consensus_7835#1      ------------------------------