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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1488 fasta sequence
[TAAAATAAAAACAGGTCGCA-CCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGATGCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCATCTCGTCAGCGAGTCGTAGA-ATTGGGCAAACCGGGGGTGAAGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTGGACATCCTTGCGGAGGAAAATTTTACCACAACCGGCGACGAATGTACCAACGAGTTGCCCACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACCGTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCTTATCACATCCTGCACCGGACGCCGAAACAGTTCAAAACCAAATCCATACTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCG-TGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATA-TTTCGTATTGCA-GGNGGTGCTTATACTTTGCCGGATACAGCCCCTTCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTGCCTGTGCTTTGAAATAATGGTACTATCATGCTGGGCCTCCCTGCTGTACAAATCGCCCTCCATCATTGGGCCAGGCTAGGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAAAATCCAGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAATTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGCCGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCGTTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATGGAAATCTTTAACAAATACAATTAAATCGAAACGAATAGCATTTCATCTAAGTCGTATAAAA]
[+] EMBL CNS08P1B [TAAAATAAAAACAGGTCGCA CCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGATGCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCATCTCGTCAGCGAGTCGTAGA ATTGGGCAAACCGGGGGTGAAGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTGGACATCCTTGCGGAGGAAAATTTTACCACAACCGGCGACGAATGTACCAACGAGTTGCCCACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACCGTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCTTATCACATCCTGCACCGGACGCCGAAACAGTTCAAAACCAAATCCATCCTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCTGTGTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTTTTTTTAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCT ]
[+] EMBL CNS08VAT [ AGGTCGCACCCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGATGCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCATCTCGTCAGCGAGTCGTAGACATTGGGCAAACCGGGGGTGAGGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTa ]
[+] EMBL BX625198 [ ggCCGGGGGTGAAGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTGGACATCCTTGCGGAGGAAAACTTTACCACGACCGGCGACGAATGTACCAACGAGTTGCCCACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACCGTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCCTATCACATCCTGCACCGGACGCCGAAACAGTTCAAAACCAAATCCATACTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCG TGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATA TTTCGTATTGCA GGNGGNGCTTATACTTTGCCGGA ]
[+] EMBL BX623968 [ ACTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCG TGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTTCGTATTGCANGCGGGTGCTTATACTTTGNCGGATACAGCCCCTTCATT ]
[-] EMBL CNS08P1C [ CAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCCGCTGCCGGTCGTACAAACTGCAAAATTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATA TTTCGTATTGCA GGCGGTGCTTATACTTTGCCGGATACAGCCCC TCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTGCCTGTGCTTTGAAATAATGGTACTATCATGCTGGGCCTCCCTGCTGTACAAATCGCCCTCCATCATTGGGCCAGGCTAGGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAAAATCCAGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAATTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGCCGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCGTTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATGGAAATCTTTAACAAATACAATTAAATCGAAACGAATAGCATTTCATCTAAGTCGTATAAAA]
[-] EMBL CNS08VAU [ GGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAAAATCCAGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAATTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGCCGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCGTTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATGGAAATCTTTAACAAATACAATTAAATCG AACGAATAGCA TTCAACCAA CCGTAAAA ]
consensusID : consensus_7839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence
[CCAAGAATCGGCACGAGGCTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGCGGTGCTTATACTTTGCCGGATACAGCCCCTCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTTGCCTGTGCTTTGAAATGATGGTACTATCATGCTGGGCCTCCCTGGNNTGTTACAAATCGGCCTCCATCATTGGGGCCAGGCTTAGGCGTGAAAACGACGGAGGGGCGGAAAAAGCAGCCAGAGAAATCCCAGGGATGTNC]
[+] EMBL BX467384 [CCAAGAATCGGCACGAGGCTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGCGGTGCTTATACTTTGCCGGATACAGCCCCTCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTTGCCTGTGCTTTGAAATGATGGTACTATCATGCTGGGCCTCCCTGGNNTGTTACAAATCGGCCTCCATCATTGGGGCCAGGCTTAGGCGTGAAAACGACGGAGGGGCGGAAAAAGCAGCCAGAGAAATCCCAGGGATGTNC]
consensusID : consensus_7839#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence
[TACGTNGATGCAGAATTGNCACGAGGTGTAACGCCTATCACATTCTGCACCGGACGCCCGAAACAGTTCAAAACCAAATCCATACTTGCTGCTGACCATCTATCCNGTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCCGGTGCTTCTTCCTGTGCGATACCTGTGGATGCCATGTGTACTTCATGATCTGNT]
[+] EMBL AL697210 [TACGTNGATGCAGAATTGNCACGAGGTGTAACGCCTATCACATTCTGCACCGGACGCCCGAAACAGTTCAAAACCAAATCCATACTTGCTGCTGACCATCTATCCNGTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCCGGTGCTTCTTCCTGTGCGATACCTGTGGATGCCATGTGTACTTCATGATCTGNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7839#0 TAAAATAAAAACAGGTCGCACCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGAT 60
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 GCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCA 120
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 TCTCGTCAGCGAGTCGTAGAATTGGGCAAACCGGGGGTGAAGTGATCCGCATTACCCTGC 180
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 ATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTG 240
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 GACATCCTTGCGGAGGAAAATTTTACCACAACCGGCGACGAATGTACCAACGAGTTGCCC 300
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 ACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACC 360
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 GTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCTTATCACATCCTGCAC 420
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 --------TACGTNGATGCAGAATTGNCACGAGGTGTAACGCCTATCACATTCTGCACCG 52
consensus_7839#0 CGGACGCCGAAACAGTTCAAAACCAAATCCATACTGCTGCTGACCATCTATCCGCTCATC 480
consensus_7839#1 ---------------CCAAGAATCGGCACGAGGCTGCTGCTGACCATCTATCCGCTCATC 45
consensus_7839#2 GACGCCCGAAACAGTTCAAAACCAAATCCATACTTGCTGCTGACCATCTATCCNGTCATC 112
* * * ******************* *****
consensus_7839#0 ACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACC-GT 539
consensus_7839#1 ACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACC-GT 104
consensus_7839#2 ACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCCGGTGC-TTCTTCCTGTGCGATACCTGT 171
******************************** **** ****************** **
consensus_7839#0 G-ATGC-ATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTAT 597
consensus_7839#1 G-ATGC-ATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTAT 162
consensus_7839#2 GGATGCCATGTGTACTTCATGATCTGNT-------------------------------- 199
* **** *******************
consensus_7839#0 GTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACT 657
consensus_7839#1 GTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACT 222
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTA 717
consensus_7839#1 CCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTA 282
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCC 777
consensus_7839#1 CGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCC 342
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTG 837
consensus_7839#1 CTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTG 402
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATG 897
consensus_7839#1 CCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATG 462
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGNGGTG 957
consensus_7839#1 CTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGCGGTG 522
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CTTATACTTTGCCGGATACAGCCCCTTCATTATAGCGGCCATCGTTAGCAGCAGCATTTC 1017
consensus_7839#1 CTTATACTTTGCCGGATACAGCCCCT-CATTATAGCGGCCATCGTTAGCAGCAGCATTTC 581
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTT-GCC 1076
consensus_7839#1 CGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTTGCC 641
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 TGTGCTTTGAAATAATGGTACTATCATGCTGGGCCTCCCTGCTGT---ACAAATCGCCCT 1133
consensus_7839#1 TGTGCTTTGAAATGATGGTACTATCATGCTGGGCCTCCCTGGNNTGTTACAAATCGGCCT 701
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CCATCATTGGG-CCAGGCT-AGGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAA- 1190
consensus_7839#1 CCATCATTGGGGCCAGGCTTAGGCGTGAAAACGACGGAGGGGCGGAAAAAGCAGCCAGAG 761
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 -AATCC--AGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAA 1247
consensus_7839#1 AAATCCCAGGGATGTNC------------------------------------------- 778
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 TTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGC 1307
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 CGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCG 1367
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 TTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATG 1427
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 GAAATCTTTAACAAATACAATTAAATCGAAACGAATAGCATTTCATCTAAGTCGTATAAA 1487
consensus_7839#1 ------------------------------------------------------------
consensus_7839#2 ------------------------------------------------------------
consensus_7839#0 A 1488
consensus_7839#1 -
consensus_7839#2 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||