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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 788 fasta sequence
[TCTTACTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT-GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT-GATGCT-GGCGGACACTGGTA-GCGCGACCATAAA-TGCCAA-CGA-AACGTACAC-TCCGCTACTAT-CCGCTAT-TAGACTTT-TNAA-GAACTT-TTT-CTCTT-CCCTCTTCAGTAAACAA-GGCTCACAAAC-TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAG-TTTNGTTCGTGAAGTNAANTGCAN-TNACACAGCGCA-CCTTT-AGC-ANCTAGTACTANCNG-TAGC-NNCANTAN-AATCAANAAACTAAANAATCGGCANCNACNCTGCNNACCGCTGGNTCCACTTAGTTCTANTNNTTCATT]
[+] EMBL CF541645 [TCTTACTACCATGCTACAGATGCGGATCATCTCTGTTCCACTACCTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGTGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TNAA GAACTT TTT CTCTN NCCTCTNCAGTAAACAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACNAAGAAACTAAAAATGCACTCNATAAG TNTNGTNCGTGANGTNAANTGCAN TNACACAGCGCA CCTTT AGC ANCTAGTACTANCNG TAGC NNCANTAN AATCAANAAACTAAANAATCGGCANCNACNCTGCNNACCGCTGGNTCCACTTAGTTCTANTNNTTCATT]
[+] EMBL CF541985 [ TTACTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAGACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TNAA GAACTT TTT CTCTTCCCCTCTTCAGTAAACAANNGCTCACNAACNTTAGCGTTCGGTGACGTTAGCTGTGACCAGGAAAC ]
[+] EMBL AGA302660 [ CTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TTAA GAACTT TTT CTCTT CCCTCTTCAGTAAACAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAA ]
[+] EMBL CF542010 [ GCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TTAA GAACTT TTT CTCTT CCCTCTTCAGTAACCAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAANTGTACTNCATAAG TTTTGTTCGTGAAGTNAAATGCANTTCACACAGCGCANCCTTTAAGCNANCTAGNACNAACNGNTAGCATNCANTANTAAT ]
[+] EMBL CF542109 [ TACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCCCCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATTGGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATNGATGCTGGGCGGACACTGGTANNCGCGACCATAAAGTGCCAANCGANAACGTACACTTCCGCTACTATNCCGCTATNNAAACTTTATNAAGGANCTTNTTTNCTCTT CC ]
[+] EMBL BM651819 [ ccgGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTTGTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACTGTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTCCAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATT GGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATAT GATGCT GGCGGACACTGGTA GCGCGACCATAAA TGCCAA CGA AACGTACAC TCCGCTACTAT CCGCTAT TAGACTTT TTAA GAACTT TTT CTCTT CCCTCTTCAGTAAACAA GGCTCACAAAC TTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGGTTCGTGAAGTt ]
consensusID : consensus_7848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 761 fasta sequence
[TCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAGCGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGCGGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTATTAGACTTTTTAAGAACTTTTTCTCTTCCCTCCTCAGTAAACAAGGCTCACTAACTTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGTTCGTGAAGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACATTATAATTCAAAGAAAACTAAAAAAATGCGGCAGCGACACTTGTCACACCGCTGTGTCCCAACTTTAGTTCTGATCTATNTCCAATCCTCGCATACAGTCGTATGGCACACGCGCAAAGCTGATACAAAACNNNCGC-ANAGCAATAAAGTANANGCACACTTAAAAGCCGGCTCACAGCAGAGTACANCGGGTTNGGTGNAAATGCAGNTGT-GAGNGCGATGTGTGCAAGATGTNGTTTGCA]
[+] EMBL CF541643 [TCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGATGACTACGGCACGAACATAACGAGCGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGTCACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTCGACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGCGGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTATTAGACTTTTTAAGAACTTTTTCTCTTCCCTCCTCAGTAAACAAGGCTCACTAACTTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGTTCGTGAAGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACATTATAATTCAAAGAAAACTAAAAAAATGCGGCAGCGACACTTGTCACACCGCTGTGTCCCAACTTTAGTTCTGATCTATNTCCAATCCTCGCATACAGTCGTATGGCACACGCGCAAAGCTGATACAAAACNNNCGC ANAGCAATAAAGTANANGCACACTTAAAAGCCGGCTCACAGCAGAGTACANCGGGTTNGGTGNAAATGCAGNTGT GAGNGCGATGTGTGCAAGATGTNG ]
[+] EMBL BX626167 [ TTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATCCAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGCGGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTATTAGACTTTTTAAGAACTTTTTCTCTTCCCTCTTCAGTAAACAAGGCTCACAAACTTAGCGTTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCGTAAGTTTTGTTCGTGAAGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACATTATAATTCAAAGAAAACGAAAAAAATGCGGCAGCGACACTTGCCACACCGCTGTGTTCCAACTTTAGTTCTGATCTATTTCCAATCCTCGCATACGGTCGTACGGCACACGCGCAAAGCTGATACAAAACAAGCGCAACAGCAATAAAGTAGAAGTACGCTTAAAAGCCGGCTCACAGCAGAGTACAAC GGTTTGGTGGAAATGCAG TGTGGAGTGCGATGTGTGCAAGATGTTGTTTGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7848#0 TCTTACTGCCATGCTACAGATGCGGATCATCTCTGTTCCACTACTTTCAGCGGCGGTTTT 60
consensus_7848#1 ------------------------------------------------------------
consensus_7848#0 GTTGCAACCGCTGCTGGCAGCTCCGATATTTTGGTTTCTGCCGTGGAGTTTCCCTGCACT 120
consensus_7848#1 ------------------------------------------------------------
consensus_7848#0 GTCTCCAACCACCACTACTTTGGCGACCACTTCCGGGACGGCGGCATCGAGTGGCGCTTC 180
consensus_7848#1 ------------------------------------------------------------
consensus_7848#0 CAATTCTTCGAACGTGTCGGTCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGA 240
consensus_7848#1 --------------------TCGCAATCGGAAACCGCGTGAACACGTCGACCGGGCTCGA 40
****************************************
consensus_7848#0 TGACTACGGCACGAACATAACGAACGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGT 300
consensus_7848#1 TGACTACGGCACGAACATAACGAGCGTCCAGATAAACGTCAACCGTATGCGAAGAGCTGT 100
*********************** ************************************
consensus_7848#0 CACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTC 360
consensus_7848#1 CACCGACGCGGATTTGGCCAAGCTTGAACGAAAACTGCGTCAAGCGGCCGATGAAGGGTC 160
************************************************************
consensus_7848#0 GACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATC 420
consensus_7848#1 GACCAATGGAACGGTTATAACCATTGGCGAGCATACGATTCGGCTGCCGCACAACATATC 220
************************************************************
consensus_7848#0 CAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGC 480
consensus_7848#1 CAACCTCACCGTCAATACGTACCTCATCAACGGAATTCCTGAGAATTATATGATGCTGGC 280
************************************************************
consensus_7848#0 GGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTAT 540
consensus_7848#1 GGACACTGGTAGCGCGACCATAAATGCCAACGAAACGTACACTCCGCTACTATCCGCTAT 340
************************************************************
consensus_7848#0 TAGACTTTTNAAGAACTTTTTCTCTTCCCTCTTCAGTAAACAAGGCTCACAAACTTAGCG 600
consensus_7848#1 TAGACTTTTTAAGAACTTTTTCTCTTCCCTCCTCAGTAAACAAGGCTCACTAACTTAGCG 400
********* ********************* ****************** *********
consensus_7848#0 TTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTNGTTCGTGA 660
consensus_7848#1 TTCGGTGACGTTAGCTGTGACCAAGAAACTAAAAATGTACTCCATAAGTTTTGTTCGTGA 460
*************************************************** ********
consensus_7848#0 AGTNAANTGCANTN-ACACAGCGCACCTTT-AGCANCTAGTACTANCNGT-AGCNN-CAN 716
consensus_7848#1 AGTTAAATGCAATTCACACAGCGCACCTTTTAGCAACTAGTACTAACTGTTAGCATACAT 520
*** ** **** * *************** **** ********* * ** *** **
consensus_7848#0 TANAATC---AANAAACTAAANAAT--CGGCANCNACNCTG--CNNACCGCTGGNTCCA- 768
consensus_7848#1 TATAATTCAAAGAAAACTAAAAAAATGCGGCAGCGACACTTGTCACACCGCTGTGTCCCA 580
** *** * ******** ** ***** * ** ** * ******* ***
consensus_7848#0 --CTTAGTTCTANTNNTTCATT-------------------------------------- 788
consensus_7848#1 ACTTTAGTTCTGATCTATNTCCAATCCTCGCATACAGTCGTATGGCACACGCGCAAAGCT 640
******** * *
consensus_7848#0 ------------------------------------------------------------
consensus_7848#1 GATACAAAACNNNCGCANAGCAATAAAGTANANGCACACTTAAAAGCCGGCTCACAGCAG 700
consensus_7848#0 ------------------------------------------------------------
consensus_7848#1 AGTACANCGGGTTNGGTGNAAATGCAGNTGTGAGNGCGATGTGTGCAAGATGTNGTTTGC 760
consensus_7848#0 -
consensus_7848#1 A 761
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||